Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_galaxy_predictions.xml @ 6:cabceaa239e4 draft

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planemo upload
author jjjjia
date Thu, 23 Aug 2018 12:21:15 -0400
parents 698579246d0d
children 4b2738bc81ed
comparison
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5:698579246d0d 6:cabceaa239e4
17 '-s $__tool_directory__/scheme_species_map.tab' 17 '-s $__tool_directory__/scheme_species_map.tab'
18 '-p $plasmidfinder' 18 '-p $plasmidfinder'
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 <param type="txt" name="ID"/> 22 <param type="text" name="ID"/>
23 <param type="data" name="mlst" format="tabular" /> 23 <param type="data" name="mlst" format="tabular" />
24 <param type="data" name="mobsuitecontig" format="tabular" /> 24 <param type="data" name="mobsuitecontig" format="tabular" />
25 <param type="data" name="mobsuiteaggregate" format="tabular" /> 25 <param type="data" name="mobsuiteaggregate" format="tabular" />
26 <param type="data" name="abricate" format="tabular" /> 26 <param type="data" name="abricate" format="tabular" />
27 <param type="data" name="rgi" format="tabular" /> 27 <param type="data" name="rgi" format="tabular" />
28 <param type="data" name="plasmidfinder" format="tabular" /> 28 <param type="data" name="plasmidfinder" format="tabular" />
29 <param type="txt" name="expected"/> 29 <param type="text" name="expected"/>
30 </inputs> 30 </inputs>
31 <outputs> 31 <outputs>
32 <data name="tsvSummary" format="tabular" from_work_dir="summary.tsv"/> 32 <data name="tsvSummary" format="tabular" from_work_dir="summary.tsv"/>
33 <data name="txtSummary" format="txt" from_work_dir="summary.txt"/> 33 <data name="txtSummary" format="txt" from_work_dir="summary.txt"/>
34 </outputs> 34 </outputs>
41 <param name="abricate" value="BC11-Kpn005_S2.cp"/> 41 <param name="abricate" value="BC11-Kpn005_S2.cp"/>
42 <param name="rgi" value="BC11-Kpn005_S2.rgi.txt"/> 42 <param name="rgi" value="BC11-Kpn005_S2.rgi.txt"/>
43 <param name="plasmidfinder" value="BC11-Kpn005_S2.origins"/> 43 <param name="plasmidfinder" value="BC11-Kpn005_S2.origins"/>
44 <param name="expected" value="Klebsiella pneumoniae"/> 44 <param name="expected" value="Klebsiella pneumoniae"/>
45 <output name="tsvSummary" file="summary.tsv"/> 45 <output name="tsvSummary" file="summary.tsv"/>
46 <output name="txtSummary" file="summary.txt"/> 46 <output name="tsvSummary" file="summary.txt"/>
47 </test> 47 </test>
48 </tests> 48 </tests>
49 <help> 49 <help>
50 This tool parses stuff. 50 This tool parses stuff.
51 </help> 51 </help>