Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_galaxy_prediction.py @ 22:e03c8f2d2629 draft

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planemo upload
author jjjjia
date Tue, 28 Aug 2018 23:21:34 -0400
parents 1543496b2db4
children 2cca036ceb91
comparison
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21:1543496b2db4 22:e03c8f2d2629
691 #now onto AMR genes 691 #now onto AMR genes
692 temp += ";".join(carbapenamases) + "\t" 692 temp += ";".join(carbapenamases) + "\t"
693 temp += ";".join(amrGenes) + "\t" 693 temp += ";".join(amrGenes) + "\t"
694 694
695 #lastly plasmids 695 #lastly plasmids
696 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].name) 696 temp += str(plasmidFamily[list(plasmidFamily.keys())[0]].name) + "\t"
697 temp+= str(len(mSuitePlasmids)) + "\t" 697 temp+= str(len(mSuitePlasmids)) + "\t"
698 plasmidID = "" 698 plasmidID = ""
699 contigs = "" 699 contigs = ""
700 lengths = "" 700 lengths = ""
701 rep_type = "" 701 rep_type = ""