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comparison cpo_mobsuite.xml @ 17:ed3b291693fc draft

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planemo upload
author jjjjia
date Mon, 27 Aug 2018 19:58:24 -0400
parents 1642e3d402f8
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16:1642e3d402f8 17:ed3b291693fc
4 <requirement type="package" version="1.4.8">mob_suite</requirement> 4 <requirement type="package" version="1.4.8">mob_suite</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
7 <![CDATA[ 7 <![CDATA[
8 ln -s "${input}" "${input.name}"; 8 ln -s "${input}" "${input.name}";
9 mob_init;
10 mob_recon --num_threads \${GALAXY_SLOTS:-4} --infile "${input.name}" 9 mob_recon --num_threads \${GALAXY_SLOTS:-4} --infile "${input.name}"
11 #if str($adv_param.unicycler_contigs) == "True": 10 #if str($adv_param.unicycler_contigs) == "True":
12 --unicycler_contigs 11 --unicycler_contigs
13 #end if 12 #end if
14 #if str($adv_param.run_circlator) == "True": 13 #if str($adv_param.run_circlator) == "True":