Mercurial > repos > jjjjia > cpo_prediction

comparison cpo_plasmidfinder.xml @ 1:fea89c4d5227 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jjjjia
date Thu, 16 Aug 2018 19:27:05 -0400
parents
children cabceaa239e4
comparison
equal deleted inserted replaced
0:917a05a03ac9 1:fea89c4d5227
1 <tool id="plasmidfindercpo" name="plasmidfindercpo" version="0.8">
2 <description>this tool parses stuff</description>
3 <requirements>
4 <requirement type="package" version="0.8">abricate</requirement>
5 </requirements>
6 <command detect_errors="exit_code">
7 <![CDATA[
8 abricate
9 --datadir=$__tool_directory__/
10 --db=plasmidfinder
11 '$input'
12 >report.tsv
13 ]]>
14 </command>
15 <inputs>
16 <param type="data" name="input" format="fasta" />
17 </inputs>
18 <outputs>
19 <data name="report" format="tabular" from_work_dir="report.tsv"/>
20 </outputs>
21 <help>
22 abricate with custom database
23 </help>
24 <citations>
25 <citation type="bibtex">
26 @misc{cpo,
27 author = {j, j},
28 year = {2018},
29 title = {cpo_prediction},
30 publisher = {j},
31 journal = {j of j},
32 url = {https://bfjia.net,
33 }</citation>
34 </citations>
35 </tool>