Mercurial > repos > jjjjia > cpo_prediction
comparison cpo_rgi.xml @ 1:fea89c4d5227 draft
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| author | jjjjia |
|---|---|
| date | Thu, 16 Aug 2018 19:27:05 -0400 |
| parents | |
| children | 698579246d0d |
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| 0:917a05a03ac9 | 1:fea89c4d5227 |
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| 1 <tool id="rgi" name="rgi" version="4.0.3"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="4.0.3">rgi</requirement> | |
| 4 <requirement type="package" version="2.7">python</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 rgi load -i $__tool_directory__/card202.json --local && rgi main -t contig -a BLAST -i $input -o rgiResult -n "\${GALAXY_SLOTS:-4}" --local --clean | |
| 8 ]]></command> | |
| 9 | |
| 10 <inputs> | |
| 11 <param type="data" name="input" format="fasta" /> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data name="rgiResultTsv" format="tabular" from_work_dir="rgiResult.txt"/> | |
| 15 </outputs> | |
| 16 <help> | |
| 17 runs rgi | |
| 18 </help> | |
| 19 <citations> | |
| 20 <citation type="bibtex"> | |
| 21 @misc{cpo, | |
| 22 author = {j, j}, | |
| 23 year = {2018}, | |
| 24 title = {cpo_prediction}, | |
| 25 publisher = {j}, | |
| 26 journal = {j of j}, | |
| 27 url = {https://bfjia.net, | |
| 28 }</citation> | |
| 29 </citations> | |
| 30 </tool> |