Mercurial > repos > jjjjia > cpo_prediction

diff cpo_galaxy_predictions.xml @ 18:596bf8a792de draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author jjjjia
date Tue, 28 Aug 2018 15:15:09 -0400
parents a14b12a71a53
children
line wrap: on
line diff
--- a/cpo_galaxy_predictions.xml	Mon Aug 27 19:58:24 2018 -0400
+++ b/cpo_galaxy_predictions.xml	Tue Aug 28 15:15:09 2018 -0400
@@ -11,11 +11,12 @@
 		'-m $mlst'
 		'-c $mobsuitecontig'
 		'-f $mobsuiteaggregate'
-		'-a $abricate'
+		'-a $resfinder'
 		'-r $rgi'
 		'-e $expected'
 		'-s $__tool_directory__/scheme_species_map.tab'
     '-p $plasmidfinder'
+    '-d $mash'
     ]]>
 	</command>
     <inputs>
@@ -23,15 +24,16 @@
         <param type="data" name="mlst" format="tabular" />
         <param type="data" name="mobsuitecontig" format="tabular" />
         <param type="data" name="mobsuiteaggregate" format="tabular" />
-        <param type="data" name="abricate" format="tabular" />
+        <param type="data" name="resfinder" format="tabular" />
         <param type="data" name="rgi" format="tabular" />
         <param type="data" name="plasmidfinder" format="tabular" />
+        <param type="data" name="mash" format ="tabular"/>
         <param type="text" name="expected" optional ="false"/>
     </inputs>
     <outputs>
         <data name="tsvSummary" format="tabular" from_work_dir="summary.tsv"/>
-          <data name="tsvSummaryExistingFormat" format="tabular" from_work_dir="summary.linda.tsv"/>
-		  <data name="txtSummary" format="txt" from_work_dir="summary.txt"/>
+        <data name="tsvSummaryExistingFormat" format="tabular" from_work_dir="summary.linda.tsv"/>
+		    <data name="txtSummary" format="txt" from_work_dir="summary.txt"/>
     </outputs>
 	<tests>
         <test>