diff cpo_clustalw.xml @ 5:698579246d0d draft

planemo upload
author jjjjia
date Tue, 21 Aug 2018 17:53:08 -0400
parents fea89c4d5227
children cabceaa239e4
line wrap: on
line diff
--- a/cpo_clustalw.xml	Mon Aug 20 19:31:34 2018 -0400
+++ b/cpo_clustalw.xml	Tue Aug 21 17:53:08 2018 -0400
@@ -1,5 +1,5 @@
 <tool id="cpo_clustalw" name="cpo_clustalw" version="2.1">
-  <description>makes tree from alignment</description>
+  <description>Modified version of clustalw2 v2.1 to produce NJ trees from an SNIPPY produced alignment</description>
   <requirements>
      <requirement type="package" version="2.1">clustalw</requirement>
   </requirements>   
@@ -15,21 +15,6 @@
     <data name="phylip" format="txt" from_work_dir="*.ph"/> 
     <data name="njtree" format="txt" from_work_dir="*.nj*"/>
   </outputs>
-  <tests>
-    <test>
-        <param name="input" value="plasmid_476.fasta" ftype="fasta"/>
-        <section name="adv_param">
-         <param name="evalue" value="0.00001"/>
-         <param name="unicycler_contigs" value="True"/>
-         <param name="run_circlator"  value="True"/>
-        </section>
-        <output name="outfile1">
-          <assert_contents>
-            <has_text text="NC_019097"/>
-          </assert_contents>  
-        </output> 
-    </test>
-  </tests>
   <help>
 
 **Syntax**
@@ -64,4 +49,4 @@
   url = {https://github.com/phac-nml/mob-suite}
     }</citation>
   </citations>
-</tool>
\ No newline at end of file
+</tool>