Mercurial > repos > jjjjia > cpo_prediction
diff cpo_clustalw.xml @ 5:698579246d0d draft
planemo upload
author | jjjjia |
---|---|
date | Tue, 21 Aug 2018 17:53:08 -0400 |
parents | fea89c4d5227 |
children | cabceaa239e4 |
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--- a/cpo_clustalw.xml Mon Aug 20 19:31:34 2018 -0400 +++ b/cpo_clustalw.xml Tue Aug 21 17:53:08 2018 -0400 @@ -1,5 +1,5 @@ <tool id="cpo_clustalw" name="cpo_clustalw" version="2.1"> - <description>makes tree from alignment</description> + <description>Modified version of clustalw2 v2.1 to produce NJ trees from an SNIPPY produced alignment</description> <requirements> <requirement type="package" version="2.1">clustalw</requirement> </requirements> @@ -15,21 +15,6 @@ <data name="phylip" format="txt" from_work_dir="*.ph"/> <data name="njtree" format="txt" from_work_dir="*.nj*"/> </outputs> - <tests> - <test> - <param name="input" value="plasmid_476.fasta" ftype="fasta"/> - <section name="adv_param"> - <param name="evalue" value="0.00001"/> - <param name="unicycler_contigs" value="True"/> - <param name="run_circlator" value="True"/> - </section> - <output name="outfile1"> - <assert_contents> - <has_text text="NC_019097"/> - </assert_contents> - </output> - </test> - </tests> <help> **Syntax** @@ -64,4 +49,4 @@ url = {https://github.com/phac-nml/mob-suite} }</citation> </citations> -</tool> \ No newline at end of file +</tool>