Mercurial > repos > jjjjia > cpo_prediction

diff cpo_galaxy_predictions.xml @ 5:698579246d0d draft

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planemo upload
author jjjjia
date Tue, 21 Aug 2018 17:53:08 -0400
parents fea89c4d5227
children cabceaa239e4
line wrap: on
line diff
--- a/cpo_galaxy_predictions.xml	Mon Aug 20 19:31:34 2018 -0400
+++ b/cpo_galaxy_predictions.xml	Tue Aug 21 17:53:08 2018 -0400
@@ -1,6 +1,6 @@
-<tool id="cpo_prediction" name="cpoParser" version="0.1.0">
-	<description>this tool parses stuff</description>
-	<requirements>
+<tool id="cpo_prediction_parser" name="cpo_prediction_parser" version="0.1.0">
+  <description>This tool combines outputs from MLST, ResFinder, PlasmidFinder, Mobsuite, RGI into a TSV for the cpo_prediction workflow</description>
+  <requirements>
 		<requirement type="package" version="0.23.4">pandas</requirement>
 		<requirement type="package" version="3.6">python</requirement>
 	</requirements>
@@ -19,18 +19,18 @@
     ]]>
 	</command>
     <inputs>
-        <param type="text" name="ID"/>
+        <param type="txt" name="ID"/>
         <param type="data" name="mlst" format="tabular" />
         <param type="data" name="mobsuitecontig" format="tabular" />
         <param type="data" name="mobsuiteaggregate" format="tabular" />
         <param type="data" name="abricate" format="tabular" />
         <param type="data" name="rgi" format="tabular" />
         <param type="data" name="plasmidfinder" format="tabular" />
-        <param type="text" name="expected"/>
+        <param type="txt" name="expected"/>
     </inputs>
     <outputs>
         <data name="tsvSummary" format="tabular" from_work_dir="summary.tsv"/>
-		  <data name="txtSummary" format="text" from_work_dir="summary.txt"/>
+		  <data name="txtSummary" format="txt" from_work_dir="summary.txt"/>
     </outputs>
 	<tests>
         <test>