Mercurial > repos > jjjjia > cpo_prediction
diff cpo_resfinder.xml @ 1:fea89c4d5227 draft
Uploaded
author | jjjjia |
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date | Thu, 16 Aug 2018 19:27:05 -0400 |
parents | |
children | 698579246d0d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpo_resfinder.xml Thu Aug 16 19:27:05 2018 -0400 @@ -0,0 +1,35 @@ +<tool id="resfindercpo" name="resfindercpo" version="0.8"> + <description>this tool parses stuff</description> + <requirements> + <requirement type="package" version="0.8">abricate</requirement> + </requirements> + <command detect_errors="exit_code"> + <![CDATA[ + abricate + --datadir=$__tool_directory__/ + --db=cpo + '$input' + >report.tsv + ]]> + </command> + <inputs> + <param type="data" name="input" format="fasta" /> + </inputs> + <outputs> + <data name="report" format="tabular" from_work_dir="report.tsv"/> + </outputs> + <help> + abricate with custom database + </help> + <citations> + <citation type="bibtex"> +@misc{cpo, + author = {j, j}, + year = {2018}, + title = {cpo_prediction}, + publisher = {j}, + journal = {j of j}, + url = {https://bfjia.net, +}</citation> + </citations> +</tool> \ No newline at end of file