--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/plasmidfinder/sequences.nsd	Thu Aug 16 19:27:05 2018 -0400
@@ -0,0 +1,526 @@
+lcl|plasmidfinder~~~col(bs512)_1__nc_010656_dupe~~~1
+lcl|plasmidfinder~~~col(bs512)_1~~~nc_0106560
+lcl|plasmidfinder~~~col(imgs31)_1~~~nc_0114062
+lcl|plasmidfinder~~~col(irgk)_1~~~ay5430713
+lcl|plasmidfinder~~~col(kphs6)_1~~~nc_0168414
+lcl|plasmidfinder~~~col(mg828)_1~~~nc_0084865
+lcl|plasmidfinder~~~col(mgd2)_1~~~nc_0037896
+lcl|plasmidfinder~~~col(mp18)_1~~~nc_0136527
+lcl|plasmidfinder~~~col(pwes)_1~~~dq26876413
+lcl|plasmidfinder~~~col(sd853)_1~~~nc_0153928
+lcl|plasmidfinder~~~col(vcm04)_1~~~hm2311659
+lcl|plasmidfinder~~~col(yc)_1~~~nc_00214410
+lcl|plasmidfinder~~~col(ye4449)_1~~~fj69640512
+lcl|plasmidfinder~~~col(yf27601)_1~~~jf93765511
+lcl|plasmidfinder~~~col156_1~~~nc_00978114
+lcl|plasmidfinder~~~col3m_1~~~jx51406515
+lcl|plasmidfinder~~~col8282_1~~~dq99535316
+lcl|plasmidfinder~~~cole10_1~~~x0165417
+lcl|plasmidfinder~~~colkp3_1~~~jn20580018
+lcl|plasmidfinder~~~colpvc_1~~~jx13308820
+lcl|plasmidfinder~~~colrnai_1~~~dq29801919
+lcl|plasmidfinder~~~inca/c2_1~~~jn15780421
+lcl|plasmidfinder~~~inca/c_1~~~fj70580722
+lcl|plasmidfinder~~~incb/o/k/z_1~~~cu92814723
+lcl|plasmidfinder~~~incb/o/k/z_2~~~gu25664124
+lcl|plasmidfinder~~~incb/o/k/z_3~~~gq25988825
+lcl|plasmidfinder~~~incb/o/k/z_4~~~fn86883226
+lcl|plasmidfinder~~~incfia(hi1)_1_hi1~~~af25087827
+lcl|plasmidfinder~~~incfia_1~~~ap00191828
+lcl|plasmidfinder~~~incfib(ap001918)_1~~~ap00191829
+lcl|plasmidfinder~~~incfib(k)_1_kpn3~~~jn23370430
+lcl|plasmidfinder~~~incfib(mar)_1_pndm-mar~~~jn42033631
+lcl|plasmidfinder~~~incfib(pb171)_1_pb171~~~ab02494633
+lcl|plasmidfinder~~~incfib(pctu1)_1_pctu1~~~fn54309434
+lcl|plasmidfinder~~~incfib(pctu3)_1_pctu3~~~fn54309635
+lcl|plasmidfinder~~~incfib(pecla)_1_pecla~~~cp00191936
+lcl|plasmidfinder~~~incfib(pentas01)_1_pentas01~~~cp00302737
+lcl|plasmidfinder~~~incfib(pente01)_1_pente01~~~cp00065438
+lcl|plasmidfinder~~~incfib(phcm2)_1_phcm2~~~al51338439
+lcl|plasmidfinder~~~incfib(pkphs1)_1_pkphs1~~~cp00322340
+lcl|plasmidfinder~~~incfib(plf82)_1_plf82~~~cu63887241
+lcl|plasmidfinder~~~incfib(pqil)_1_pqil~~~jn23370542
+lcl|plasmidfinder~~~incfib(s)_1~~~fn43203132
+lcl|plasmidfinder~~~incfic(fii)_1~~~ap00191843
+lcl|plasmidfinder~~~incfii(29)_1_puti89~~~cp00303544
+lcl|plasmidfinder~~~incfii(k)_1~~~cp00064845
+lcl|plasmidfinder~~~incfii(p14)_1_p14~~~jq41853851
+lcl|plasmidfinder~~~incfii(p96a)_1_p96a~~~jq41852152
+lcl|plasmidfinder~~~incfii(pcoo)_1_pcoo~~~cr94228555
+lcl|plasmidfinder~~~incfii(pcry)_1_pcry~~~nc_00581453
+lcl|plasmidfinder~~~incfii(pctu2)_1_pctu2~~~fn54309554
+lcl|plasmidfinder~~~incfii(pecla)_1_pecla~~~cp00191956
+lcl|plasmidfinder~~~incfii(penta)_1_penta~~~cp00302757
+lcl|plasmidfinder~~~incfii(phn7a8)_1_phn7a8~~~jn23251758
+lcl|plasmidfinder~~~incfii(pkpx1)~~~ap01205559
+lcl|plasmidfinder~~~incfii(pmet)_1_pmet1~~~eu38301660
+lcl|plasmidfinder~~~incfii(prsb107)_1_prsb107~~~aj85108961
+lcl|plasmidfinder~~~incfii(pse11)_1_pse11~~~ap00924262
+lcl|plasmidfinder~~~incfii(pseudo)_1_pseudo~~~nc_01175964
+lcl|plasmidfinder~~~incfii(pyva12790)_1_pyva12790~~~ay15084363
+lcl|plasmidfinder~~~incfii(s)_1~~~cp00085846
+lcl|plasmidfinder~~~incfii(sarc14)_1_sarc14~~~jq41854047
+lcl|plasmidfinder~~~incfii(serratia)_1_serratia~~~nc_00982948
+lcl|plasmidfinder~~~incfii(y)_1_ps~~~cp00104949
+lcl|plasmidfinder~~~incfii(yp)_1_yersenia~~~cp00067050
+lcl|plasmidfinder~~~incfii_1_pkp91~~~cp00096666
+lcl|plasmidfinder~~~incfii_1_psfo~~~af40129267
+lcl|plasmidfinder~~~incfii_1~~~ay45801665
+lcl|plasmidfinder~~~inchi1a(cit)_1_pndm-cit~~~jx18297568
+lcl|plasmidfinder~~~inchi1a_1~~~af25087869
+lcl|plasmidfinder~~~inchi1b(cit)_1_pndm-cit~~~jx18297570
+lcl|plasmidfinder~~~inchi1b(r27)_1_r27~~~af25087871
+lcl|plasmidfinder~~~inchi1b_1_pndm-mar~~~jn42033672
+lcl|plasmidfinder~~~inchi2_1~~~bx66401574
+lcl|plasmidfinder~~~inchi2a_1~~~bx66401573
+lcl|plasmidfinder~~~inci1_1_alpha~~~ap00514775
+lcl|plasmidfinder~~~inci2_1_delta~~~ap00252777
+lcl|plasmidfinder~~~inci2_1~~~kp34712776
+lcl|plasmidfinder~~~incl/m(pmu407)_1_pmu407~~~u2734578
+lcl|plasmidfinder~~~incl/m(poxa-48)_1_poxa-48~~~jn62628679
+lcl|plasmidfinder~~~incl/m_1~~~af55041580
+lcl|plasmidfinder~~~incn2_1~~~jf78554981
+lcl|plasmidfinder~~~incn3_1~~~ef21913482
+lcl|plasmidfinder~~~incn_1~~~ay04627683
+lcl|plasmidfinder~~~incp(6)_1~~~jf78555084
+lcl|plasmidfinder~~~incp(beta)_1_beta~~~u6719485
+lcl|plasmidfinder~~~incq1_1~~~he65472686
+lcl|plasmidfinder~~~incq2_1~~~fj69640487
+lcl|plasmidfinder~~~incr_1~~~dq44957888
+lcl|plasmidfinder~~~inct_1~~~ap00423789
+lcl|plasmidfinder~~~incu_1~~~dq40110390
+lcl|plasmidfinder~~~incw_1~~~ef63350791
+lcl|plasmidfinder~~~incx1_1~~~eu37091392
+lcl|plasmidfinder~~~incx1_2~~~cp00341793
+lcl|plasmidfinder~~~incx1_3~~~cp00112394
+lcl|plasmidfinder~~~incx1_4~~~jn93589895
+lcl|plasmidfinder~~~incx2_1~~~jq26933596
+lcl|plasmidfinder~~~incx3(pec14)_1_pec14~~~jn93589997
+lcl|plasmidfinder~~~incx3_1~~~jn24785298
+lcl|plasmidfinder~~~incx4_1~~~cp00289599
+lcl|plasmidfinder~~~incx4_2~~~fn543504100
+lcl|plasmidfinder~~~incx5_1~~~nc_015054101
+lcl|plasmidfinder~~~incx6_1~~~am942760102
+lcl|plasmidfinder~~~incy_1~~~k02380103
+lcl|plasmidfinder~~~p0111_1~~~ap010962107
+lcl|plasmidfinder~~~p1_alpha~~~bn000925104
+lcl|plasmidfinder~~~padap_1~~~af135182108
+lcl|plasmidfinder~~~pec4115_1~~~nc_011351109
+lcl|plasmidfinder~~~pentas02_1~~~cp003028110
+lcl|plasmidfinder~~~pesa2_1~~~cp000784111
+lcl|plasmidfinder~~~pip31758(p153)_1_p153~~~cp000719112
+lcl|plasmidfinder~~~pip31758(p59)_1_p59~~~cp000718113
+lcl|plasmidfinder~~~pip32953_1~~~bx936400114
+lcl|plasmidfinder~~~pjars36_1~~~nc_015068115
+lcl|plasmidfinder~~~psl483_1~~~cp001137116
+lcl|plasmidfinder~~~psm22_1~~~nc_015972117
+lcl|plasmidfinder~~~pxuzhou21_1~~~cp001927118
+lcl|plasmidfinder~~~pye854_1~~~am905950119
+lcl|plasmidfinder~~~rep10_1_repl(pe5)~~~m17990120
+lcl|plasmidfinder~~~rep10_2_cds1(pim13)~~~m13761121
+lcl|plasmidfinder~~~rep10_3_orf(pne131)~~~nc001390122
+lcl|plasmidfinder~~~rep10_5_repl(pwbg738)~~~dq088624.1123
+lcl|plasmidfinder~~~rep10_6_rep(sap093b)~~~gq900442.1124
+lcl|plasmidfinder~~~rep10b_1_rep(psk3)~~~nc001994125
+lcl|plasmidfinder~~~rep10b_2_rep(psk6)~~~sau96610126
+lcl|plasmidfinder~~~rep11_1_repa(pb82)~~~ab178871127
+lcl|plasmidfinder~~~rep11_2_repa(pef1071)~~~af164559128
+lcl|plasmidfinder~~~rep11_3_rep(pefr)~~~af511037129
+lcl|plasmidfinder~~~rep12_1_cds32(pbmb67)~~~dq363750130
+lcl|plasmidfinder~~~rep12_2_cds1(plasmid)~~~ay278324131
+lcl|plasmidfinder~~~rep13_1_orf(pc194)~~~nc002013132
+lcl|plasmidfinder~~~rep13_2_cds39(pssp1)~~~ap008935133
+lcl|plasmidfinder~~~rep13_3_rep(pwbg1773)~~~ef537646134
+lcl|plasmidfinder~~~rep13_4_rep(pkh13)~~~nc010426.1135
+lcl|plasmidfinder~~~rep13_5_rep(pmc524/mbm)~~~aj312056.2136
+lcl|plasmidfinder~~~rep14_1_cds2(pefnp1)~~~ab038522137
+lcl|plasmidfinder~~~rep14_2_orf(pkq10)~~~efu01917138
+lcl|plasmidfinder~~~rep14_3_orf(pri1)~~~eu327398139
+lcl|plasmidfinder~~~rep15_1_repa(plw043)~~~ae017171140
+lcl|plasmidfinder~~~rep16_1_cds8(psas)~~~bx571858141
+lcl|plasmidfinder~~~rep16_2_cds6(psjh101)~~~cp000737142
+lcl|plasmidfinder~~~rep16_3_rep(saa6159)~~~cp002115.1143
+lcl|plasmidfinder~~~rep16_4_unknown(sap056a)~~~gq900478.1144
+lcl|plasmidfinder~~~rep16_5_unknown(pwbg759)~~~gq900401.1145
+lcl|plasmidfinder~~~rep16_6_unknown(sap071a)~~~gq900485.1146
+lcl|plasmidfinder~~~rep16_7_rep(pbora53)~~~ay917098.1147
+lcl|plasmidfinder~~~rep17_1_cds29(prum)~~~af507977148
+lcl|plasmidfinder~~~rep18_1_repa(p200b)~~~ab158402149
+lcl|plasmidfinder~~~rep18_2_repa(pef418)~~~af408195150
+lcl|plasmidfinder~~~rep19_10_rep(pwbg746)~~~gq900390.1151
+lcl|plasmidfinder~~~rep19_1_cds45(plew6932)~~~nc009130152
+lcl|plasmidfinder~~~rep19_2_rep(psa1379)~~~nc007931153
+lcl|plasmidfinder~~~rep19_3_cds20(psjh901)~~~cp000704154
+lcl|plasmidfinder~~~rep19_4_repa(pub101)~~~nc005127155
+lcl|plasmidfinder~~~rep19_5_rep(pwbg747)~~~gq900399.1156
+lcl|plasmidfinder~~~rep19_6_orf34(edina)~~~ap003089.1157
+lcl|plasmidfinder~~~rep19_7_repa(sap019a)~~~gq900385.1158
+lcl|plasmidfinder~~~rep19_8_repa(pwbg759)~~~gq900401.1159
+lcl|plasmidfinder~~~rep19_9_repa(ap071a)~~~gq900485.1160
+lcl|plasmidfinder~~~rep1_1_repe(pambeta1)~~~af007787161
+lcl|plasmidfinder~~~rep1_2_reps(pbt233)~~~x64695162
+lcl|plasmidfinder~~~rep1_3_repr(pgb354)~~~u83488163
+lcl|plasmidfinder~~~rep1_4_repe(orf17)~~~nc011140164
+lcl|plasmidfinder~~~rep1_5_cds6(pre25)~~~x92945165
+lcl|plasmidfinder~~~rep1_6_repe(ptef1)~~~ae016833166
+lcl|plasmidfinder~~~rep20_10_repa(sap057a)~~~nc_013334.1167
+lcl|plasmidfinder~~~rep20_11_repa(vrsap)~~~ap003367168
+lcl|plasmidfinder~~~rep20_1_orf1(edina)~~~ap003089169
+lcl|plasmidfinder~~~rep20_2_repa(pwbg753)~~~gq900395.1170
+lcl|plasmidfinder~~~rep20_3_rep(ptw20)~~~fn433597.1171
+lcl|plasmidfinder~~~rep20_4_repa(sap102a)~~~gq900496.1172
+lcl|plasmidfinder~~~rep20_5_repa(psk23)~~~gq900491.1173
+lcl|plasmidfinder~~~rep20_6_repa(sap059a)~~~gq900480.1174
+lcl|plasmidfinder~~~rep20_7_repa(sap074a)~~~gq900426.1175
+lcl|plasmidfinder~~~rep20_8_repa(sap063a)~~~gq900418.1176
+lcl|plasmidfinder~~~rep20_9_repa(sap055a)~~~gq900414.1177
+lcl|plasmidfinder~~~rep21_10_rep(pkh14)~~~eu164802.1178
+lcl|plasmidfinder~~~rep21_11_rep(psa1308)~~~ab254848.1179
+lcl|plasmidfinder~~~rep21_12_rep(pkh3)~~~af151117.1180
+lcl|plasmidfinder~~~rep21_13_rep(sap101a)~~~gq900495.1181
+lcl|plasmidfinder~~~rep21_14_rep(pkh21)~~~eu350088.1182
+lcl|plasmidfinder~~~rep21_1_rep(pwbg754)~~~gq900396.1183
+lcl|plasmidfinder~~~rep21_2_rep(pnvh01)~~~aj512814.1184
+lcl|plasmidfinder~~~rep21_3_ps0385-3~~~am990995.1185
+lcl|plasmidfinder~~~rep21_4_reprc(psk41)~~~af051917.1186
+lcl|plasmidfinder~~~rep21_5_reprc(pgo1)~~~fm207042.1187
+lcl|plasmidfinder~~~rep21_6_rep(pbmsa1)~~~ay541446.1188
+lcl|plasmidfinder~~~rep21_7_rep(pwbg760)~~~gq900473.1189
+lcl|plasmidfinder~~~rep21_8_rep(sap071a)~~~gq900485.1190
+lcl|plasmidfinder~~~rep21_9_rep(pkh12)~~~eu168704.2191
+lcl|plasmidfinder~~~rep22_1_repb(pub110)~~~x03408.1192
+lcl|plasmidfinder~~~rep22_2_repu(pkks825)~~~fn377602.2193
+lcl|plasmidfinder~~~rep23_1_rep(ppr9)~~~gu237136.1194
+lcl|plasmidfinder~~~rep23_2_rep(pv030-8)~~~eu366902.1195
+lcl|plasmidfinder~~~rep24_1_rep(pwbg745)~~~gq900389.1196
+lcl|plasmidfinder~~~rep24_2_rep(pwbg749)~~~gq900391.1197
+lcl|plasmidfinder~~~rep2_1_orf(e.faeciumcontig1183)_jdoe~~~198
+lcl|plasmidfinder~~~rep2_2_repr(pef1)~~~dq198088199
+lcl|plasmidfinder~~~rep3_1_rep63a(paw63)~~~bth011655200
+lcl|plasmidfinder~~~rep3_2_rep165(pbmb165)~~~dq242517201
+lcl|plasmidfinder~~~rep3_3_rep(pbt9727)~~~cp000047202
+lcl|plasmidfinder~~~rep3_4_cds38(pox2)~~~nc002146203
+lcl|plasmidfinder~~~rep4_1_cds2(pcrl291.1)~~~nc002799204
+lcl|plasmidfinder~~~rep4_2_cds3(pkc5b)~~~af378372205
+lcl|plasmidfinder~~~rep4_3_orf(pmbb1)~~~efu26268206
+lcl|plasmidfinder~~~rep5_1_rep(pmw2)~~~nc005011207
+lcl|plasmidfinder~~~rep5_2_rep(pn315)~~~ap003139208
+lcl|plasmidfinder~~~rep5_3_rep(pwbg752)~~~gq900394.1209
+lcl|plasmidfinder~~~rep5_4_rep(sap047a)~~~gq900405.1210
+lcl|plasmidfinder~~~rep5_5_rep(prj6)~~~af241888.2211
+lcl|plasmidfinder~~~rep5_6_rep(prj9)~~~af447813.1212
+lcl|plasmidfinder~~~rep5_7_rep(pje1)~~~af051916.1213
+lcl|plasmidfinder~~~rep6_1_repa(p703/5)~~~af109375214
+lcl|plasmidfinder~~~rep7_10_repc(pkh17)~~~nc_010284.1215
+lcl|plasmidfinder~~~rep7_12_rep(sap060b)~~~gq900417.1216
+lcl|plasmidfinder~~~rep7_13_rep(psbk203)~~~u35036.1217
+lcl|plasmidfinder~~~rep7_14_rep(mssa476)~~~bx571857.1218
+lcl|plasmidfinder~~~rep7_15_rep(ps0385-2)~~~am990994.1219
+lcl|plasmidfinder~~~rep7_16_repd~~~ay939911220
+lcl|plasmidfinder~~~rep7_17_repc(ps0385-1)~~~am990993.1221
+lcl|plasmidfinder~~~rep7_1_repc(cassette)~~~ab037671222
+lcl|plasmidfinder~~~rep7_2_cds2(pc221)~~~nc002129223
+lcl|plasmidfinder~~~rep7_3_cds1(pcw7)~~~j03323224
+lcl|plasmidfinder~~~rep7_4_repd(pk214)~~~nc009751225
+lcl|plasmidfinder~~~rep7_5_cds1(pkc5b)~~~af378372226
+lcl|plasmidfinder~~~rep7_6_orf(pkh1)~~~sau38656227
+lcl|plasmidfinder~~~rep7_7_rep(pkh7)~~~nc002096228
+lcl|plasmidfinder~~~rep7_8_cds4(ps194)~~~nc005564229
+lcl|plasmidfinder~~~rep7_9_cds3(pusa02)~~~nc007791230
+lcl|plasmidfinder~~~rep7b_1_repj(pc223)~~~nc_005243.1231
+lcl|plasmidfinder~~~rep7b_2_pvga~~~nc_011605.1232
+lcl|plasmidfinder~~~rep7b_3_sap089a~~~gq900440.1233
+lcl|plasmidfinder~~~rep8_1_ep002*(pam373)~~~nc002630234
+lcl|plasmidfinder~~~rep8_2_repa(pej97-1)~~~aj49170235
+lcl|plasmidfinder~~~rep9_1_repa(pad1)~~~l01794236
+lcl|plasmidfinder~~~rep9_2_prgw(pcf10)~~~ay855841237
+lcl|plasmidfinder~~~rep9_3_repa(ppd1)~~~d78016238
+lcl|plasmidfinder~~~rep9_4_repa2(ptef2)~~~ae016831239
+lcl|plasmidfinder~~~rep_1_pkpc-2~~~cp011573105
+lcl|plasmidfinder~~~repa_1_pkpc-2~~~cp013325240
+lcl|plasmidfinder~~~repa_2_pkpc-2~~~jx397875241
+lcl|plasmidfinder~~~repus10__cds25(pssp1)~~~ap008935242
+lcl|plasmidfinder~~~repus11__cds16(ptef3)~~~ae016832243
+lcl|plasmidfinder~~~repus12__rep(pub110)~~~af181950244
+lcl|plasmidfinder~~~repus15__orf(e.faecium287)~~~nzaaak010000287245
+lcl|plasmidfinder~~~repus16__repf(pe194)~~~m17811.1246
+lcl|plasmidfinder~~~repus17__rep(pkks825)~~~fn377602.2247
+lcl|plasmidfinder~~~repus18__rep(pkks825)~~~fn377602.2248
+lcl|plasmidfinder~~~repus19__rep(pdlk3)~~~gu562626.1249
+lcl|plasmidfinder~~~repus1__orf(e.faeciumcontig1258)_jdoe~~~250
+lcl|plasmidfinder~~~repus20__rep(pavx)~~~cp001784.1251
+lcl|plasmidfinder~~~repus21__rep(pwbg764)~~~gq900468.1252
+lcl|plasmidfinder~~~repus22__rep(sap015b)~~~gq900502.1253
+lcl|plasmidfinder~~~repus23__repa(sap099b)~~~gq900449.1254
+lcl|plasmidfinder~~~repus2__repa(pbi143)~~~bfu30316255
+lcl|plasmidfinder~~~repus3__repm200(pbm200)~~~dq437521256
+lcl|plasmidfinder~~~repus4__repa(pci2000)~~~af178424257
+lcl|plasmidfinder~~~repus5__cds20(petb)~~~nc003265258
+lcl|plasmidfinder~~~repus6__rep(pfl1)~~~nc002132259
+lcl|plasmidfinder~~~repus7__rep(phtbeta)~~~ab183714260
+lcl|plasmidfinder~~~repus8__orf1(pog32)~~~loppog32261
+lcl|plasmidfinder~~~repus9__rep(psk1)~~~af203376262
+lcl|plasmidfinder~~~trfa_1~~~cp11611106
+plasmidfinder~~~col(bs512)_1__nc_010656_dupe~~~1
+plasmidfinder~~~col(bs512)_1~~~nc_0106560
+plasmidfinder~~~col(imgs31)_1~~~nc_0114062
+plasmidfinder~~~col(irgk)_1~~~ay5430713
+plasmidfinder~~~col(kphs6)_1~~~nc_0168414
+plasmidfinder~~~col(mg828)_1~~~nc_0084865
+plasmidfinder~~~col(mgd2)_1~~~nc_0037896
+plasmidfinder~~~col(mp18)_1~~~nc_0136527
+plasmidfinder~~~col(pwes)_1~~~dq26876413
+plasmidfinder~~~col(sd853)_1~~~nc_0153928
+plasmidfinder~~~col(vcm04)_1~~~hm2311659
+plasmidfinder~~~col(yc)_1~~~nc_00214410
+plasmidfinder~~~col(ye4449)_1~~~fj69640512
+plasmidfinder~~~col(yf27601)_1~~~jf93765511
+plasmidfinder~~~col156_1~~~nc_00978114
+plasmidfinder~~~col3m_1~~~jx51406515
+plasmidfinder~~~col8282_1~~~dq99535316
+plasmidfinder~~~cole10_1~~~x0165417
+plasmidfinder~~~colkp3_1~~~jn20580018
+plasmidfinder~~~colpvc_1~~~jx13308820
+plasmidfinder~~~colrnai_1~~~dq29801919
+plasmidfinder~~~inca/c2_1~~~jn15780421
+plasmidfinder~~~inca/c_1~~~fj70580722
+plasmidfinder~~~incb/o/k/z_1~~~cu92814723
+plasmidfinder~~~incb/o/k/z_2~~~gu25664124
+plasmidfinder~~~incb/o/k/z_3~~~gq25988825
+plasmidfinder~~~incb/o/k/z_4~~~fn86883226
+plasmidfinder~~~incfia(hi1)_1_hi1~~~af25087827
+plasmidfinder~~~incfia_1~~~ap00191828
+plasmidfinder~~~incfib(ap001918)_1~~~ap00191829
+plasmidfinder~~~incfib(k)_1_kpn3~~~jn23370430
+plasmidfinder~~~incfib(mar)_1_pndm-mar~~~jn42033631
+plasmidfinder~~~incfib(pb171)_1_pb171~~~ab02494633
+plasmidfinder~~~incfib(pctu1)_1_pctu1~~~fn54309434
+plasmidfinder~~~incfib(pctu3)_1_pctu3~~~fn54309635
+plasmidfinder~~~incfib(pecla)_1_pecla~~~cp00191936
+plasmidfinder~~~incfib(pentas01)_1_pentas01~~~cp00302737
+plasmidfinder~~~incfib(pente01)_1_pente01~~~cp00065438
+plasmidfinder~~~incfib(phcm2)_1_phcm2~~~al51338439
+plasmidfinder~~~incfib(pkphs1)_1_pkphs1~~~cp00322340
+plasmidfinder~~~incfib(plf82)_1_plf82~~~cu63887241
+plasmidfinder~~~incfib(pqil)_1_pqil~~~jn23370542
+plasmidfinder~~~incfib(s)_1~~~fn43203132
+plasmidfinder~~~incfic(fii)_1~~~ap00191843
+plasmidfinder~~~incfii(29)_1_puti89~~~cp00303544
+plasmidfinder~~~incfii(k)_1~~~cp00064845
+plasmidfinder~~~incfii(p14)_1_p14~~~jq41853851
+plasmidfinder~~~incfii(p96a)_1_p96a~~~jq41852152
+plasmidfinder~~~incfii(pcoo)_1_pcoo~~~cr94228555
+plasmidfinder~~~incfii(pcry)_1_pcry~~~nc_00581453
+plasmidfinder~~~incfii(pctu2)_1_pctu2~~~fn54309554
+plasmidfinder~~~incfii(pecla)_1_pecla~~~cp00191956
+plasmidfinder~~~incfii(penta)_1_penta~~~cp00302757
+plasmidfinder~~~incfii(phn7a8)_1_phn7a8~~~jn23251758
+plasmidfinder~~~incfii(pkpx1)~~~ap01205559
+plasmidfinder~~~incfii(pmet)_1_pmet1~~~eu38301660
+plasmidfinder~~~incfii(prsb107)_1_prsb107~~~aj85108961
+plasmidfinder~~~incfii(pse11)_1_pse11~~~ap00924262
+plasmidfinder~~~incfii(pseudo)_1_pseudo~~~nc_01175964
+plasmidfinder~~~incfii(pyva12790)_1_pyva12790~~~ay15084363
+plasmidfinder~~~incfii(s)_1~~~cp00085846
+plasmidfinder~~~incfii(sarc14)_1_sarc14~~~jq41854047
+plasmidfinder~~~incfii(serratia)_1_serratia~~~nc_00982948
+plasmidfinder~~~incfii(y)_1_ps~~~cp00104949
+plasmidfinder~~~incfii(yp)_1_yersenia~~~cp00067050
+plasmidfinder~~~incfii_1_pkp91~~~cp00096666
+plasmidfinder~~~incfii_1_psfo~~~af40129267
+plasmidfinder~~~incfii_1~~~ay45801665
+plasmidfinder~~~inchi1a(cit)_1_pndm-cit~~~jx18297568
+plasmidfinder~~~inchi1a_1~~~af25087869
+plasmidfinder~~~inchi1b(cit)_1_pndm-cit~~~jx18297570
+plasmidfinder~~~inchi1b(r27)_1_r27~~~af25087871
+plasmidfinder~~~inchi1b_1_pndm-mar~~~jn42033672
+plasmidfinder~~~inchi2_1~~~bx66401574
+plasmidfinder~~~inchi2a_1~~~bx66401573
+plasmidfinder~~~inci1_1_alpha~~~ap00514775
+plasmidfinder~~~inci2_1_delta~~~ap00252777
+plasmidfinder~~~inci2_1~~~kp34712776
+plasmidfinder~~~incl/m(pmu407)_1_pmu407~~~u2734578
+plasmidfinder~~~incl/m(poxa-48)_1_poxa-48~~~jn62628679
+plasmidfinder~~~incl/m_1~~~af55041580
+plasmidfinder~~~incn2_1~~~jf78554981
+plasmidfinder~~~incn3_1~~~ef21913482
+plasmidfinder~~~incn_1~~~ay04627683
+plasmidfinder~~~incp(6)_1~~~jf78555084
+plasmidfinder~~~incp(beta)_1_beta~~~u6719485
+plasmidfinder~~~incq1_1~~~he65472686
+plasmidfinder~~~incq2_1~~~fj69640487
+plasmidfinder~~~incr_1~~~dq44957888
+plasmidfinder~~~inct_1~~~ap00423789
+plasmidfinder~~~incu_1~~~dq40110390
+plasmidfinder~~~incw_1~~~ef63350791
+plasmidfinder~~~incx1_1~~~eu37091392
+plasmidfinder~~~incx1_2~~~cp00341793
+plasmidfinder~~~incx1_3~~~cp00112394
+plasmidfinder~~~incx1_4~~~jn93589895
+plasmidfinder~~~incx2_1~~~jq26933596
+plasmidfinder~~~incx3(pec14)_1_pec14~~~jn93589997
+plasmidfinder~~~incx3_1~~~jn24785298
+plasmidfinder~~~incx4_1~~~cp00289599
+plasmidfinder~~~incx4_2~~~fn543504100
+plasmidfinder~~~incx5_1~~~nc_015054101
+plasmidfinder~~~incx6_1~~~am942760102
+plasmidfinder~~~incy_1~~~k02380103
+plasmidfinder~~~p0111_1~~~ap010962107
+plasmidfinder~~~p1_alpha~~~bn000925104
+plasmidfinder~~~padap_1~~~af135182108
+plasmidfinder~~~pec4115_1~~~nc_011351109
+plasmidfinder~~~pentas02_1~~~cp003028110
+plasmidfinder~~~pesa2_1~~~cp000784111
+plasmidfinder~~~pip31758(p153)_1_p153~~~cp000719112
+plasmidfinder~~~pip31758(p59)_1_p59~~~cp000718113
+plasmidfinder~~~pip32953_1~~~bx936400114
+plasmidfinder~~~pjars36_1~~~nc_015068115
+plasmidfinder~~~psl483_1~~~cp001137116
+plasmidfinder~~~psm22_1~~~nc_015972117
+plasmidfinder~~~pxuzhou21_1~~~cp001927118
+plasmidfinder~~~pye854_1~~~am905950119
+plasmidfinder~~~rep10_1_repl(pe5)~~~m17990120
+plasmidfinder~~~rep10_2_cds1(pim13)~~~m13761121
+plasmidfinder~~~rep10_3_orf(pne131)~~~nc001390122
+plasmidfinder~~~rep10_5_repl(pwbg738)~~~dq088624.1123
+plasmidfinder~~~rep10_6_rep(sap093b)~~~gq900442.1124
+plasmidfinder~~~rep10b_1_rep(psk3)~~~nc001994125
+plasmidfinder~~~rep10b_2_rep(psk6)~~~sau96610126
+plasmidfinder~~~rep11_1_repa(pb82)~~~ab178871127
+plasmidfinder~~~rep11_2_repa(pef1071)~~~af164559128
+plasmidfinder~~~rep11_3_rep(pefr)~~~af511037129
+plasmidfinder~~~rep12_1_cds32(pbmb67)~~~dq363750130
+plasmidfinder~~~rep12_2_cds1(plasmid)~~~ay278324131
+plasmidfinder~~~rep13_1_orf(pc194)~~~nc002013132
+plasmidfinder~~~rep13_2_cds39(pssp1)~~~ap008935133
+plasmidfinder~~~rep13_3_rep(pwbg1773)~~~ef537646134
+plasmidfinder~~~rep13_4_rep(pkh13)~~~nc010426.1135
+plasmidfinder~~~rep13_5_rep(pmc524/mbm)~~~aj312056.2136
+plasmidfinder~~~rep14_1_cds2(pefnp1)~~~ab038522137
+plasmidfinder~~~rep14_2_orf(pkq10)~~~efu01917138
+plasmidfinder~~~rep14_3_orf(pri1)~~~eu327398139
+plasmidfinder~~~rep15_1_repa(plw043)~~~ae017171140
+plasmidfinder~~~rep16_1_cds8(psas)~~~bx571858141
+plasmidfinder~~~rep16_2_cds6(psjh101)~~~cp000737142
+plasmidfinder~~~rep16_3_rep(saa6159)~~~cp002115.1143
+plasmidfinder~~~rep16_4_unknown(sap056a)~~~gq900478.1144
+plasmidfinder~~~rep16_5_unknown(pwbg759)~~~gq900401.1145
+plasmidfinder~~~rep16_6_unknown(sap071a)~~~gq900485.1146
+plasmidfinder~~~rep16_7_rep(pbora53)~~~ay917098.1147
+plasmidfinder~~~rep17_1_cds29(prum)~~~af507977148
+plasmidfinder~~~rep18_1_repa(p200b)~~~ab158402149
+plasmidfinder~~~rep18_2_repa(pef418)~~~af408195150
+plasmidfinder~~~rep19_10_rep(pwbg746)~~~gq900390.1151
+plasmidfinder~~~rep19_1_cds45(plew6932)~~~nc009130152
+plasmidfinder~~~rep19_2_rep(psa1379)~~~nc007931153
+plasmidfinder~~~rep19_3_cds20(psjh901)~~~cp000704154
+plasmidfinder~~~rep19_4_repa(pub101)~~~nc005127155
+plasmidfinder~~~rep19_5_rep(pwbg747)~~~gq900399.1156
+plasmidfinder~~~rep19_6_orf34(edina)~~~ap003089.1157
+plasmidfinder~~~rep19_7_repa(sap019a)~~~gq900385.1158
+plasmidfinder~~~rep19_8_repa(pwbg759)~~~gq900401.1159
+plasmidfinder~~~rep19_9_repa(ap071a)~~~gq900485.1160
+plasmidfinder~~~rep1_1_repe(pambeta1)~~~af007787161
+plasmidfinder~~~rep1_2_reps(pbt233)~~~x64695162
+plasmidfinder~~~rep1_3_repr(pgb354)~~~u83488163
+plasmidfinder~~~rep1_4_repe(orf17)~~~nc011140164
+plasmidfinder~~~rep1_5_cds6(pre25)~~~x92945165
+plasmidfinder~~~rep1_6_repe(ptef1)~~~ae016833166
+plasmidfinder~~~rep20_10_repa(sap057a)~~~nc_013334.1167
+plasmidfinder~~~rep20_11_repa(vrsap)~~~ap003367168
+plasmidfinder~~~rep20_1_orf1(edina)~~~ap003089169
+plasmidfinder~~~rep20_2_repa(pwbg753)~~~gq900395.1170
+plasmidfinder~~~rep20_3_rep(ptw20)~~~fn433597.1171
+plasmidfinder~~~rep20_4_repa(sap102a)~~~gq900496.1172
+plasmidfinder~~~rep20_5_repa(psk23)~~~gq900491.1173
+plasmidfinder~~~rep20_6_repa(sap059a)~~~gq900480.1174
+plasmidfinder~~~rep20_7_repa(sap074a)~~~gq900426.1175
+plasmidfinder~~~rep20_8_repa(sap063a)~~~gq900418.1176
+plasmidfinder~~~rep20_9_repa(sap055a)~~~gq900414.1177
+plasmidfinder~~~rep21_10_rep(pkh14)~~~eu164802.1178
+plasmidfinder~~~rep21_11_rep(psa1308)~~~ab254848.1179
+plasmidfinder~~~rep21_12_rep(pkh3)~~~af151117.1180
+plasmidfinder~~~rep21_13_rep(sap101a)~~~gq900495.1181
+plasmidfinder~~~rep21_14_rep(pkh21)~~~eu350088.1182
+plasmidfinder~~~rep21_1_rep(pwbg754)~~~gq900396.1183
+plasmidfinder~~~rep21_2_rep(pnvh01)~~~aj512814.1184
+plasmidfinder~~~rep21_3_ps0385-3~~~am990995.1185
+plasmidfinder~~~rep21_4_reprc(psk41)~~~af051917.1186
+plasmidfinder~~~rep21_5_reprc(pgo1)~~~fm207042.1187
+plasmidfinder~~~rep21_6_rep(pbmsa1)~~~ay541446.1188
+plasmidfinder~~~rep21_7_rep(pwbg760)~~~gq900473.1189
+plasmidfinder~~~rep21_8_rep(sap071a)~~~gq900485.1190
+plasmidfinder~~~rep21_9_rep(pkh12)~~~eu168704.2191
+plasmidfinder~~~rep22_1_repb(pub110)~~~x03408.1192
+plasmidfinder~~~rep22_2_repu(pkks825)~~~fn377602.2193
+plasmidfinder~~~rep23_1_rep(ppr9)~~~gu237136.1194
+plasmidfinder~~~rep23_2_rep(pv030-8)~~~eu366902.1195
+plasmidfinder~~~rep24_1_rep(pwbg745)~~~gq900389.1196
+plasmidfinder~~~rep24_2_rep(pwbg749)~~~gq900391.1197
+plasmidfinder~~~rep2_1_orf(e.faeciumcontig1183)_jdoe~~~198
+plasmidfinder~~~rep2_2_repr(pef1)~~~dq198088199
+plasmidfinder~~~rep3_1_rep63a(paw63)~~~bth011655200
+plasmidfinder~~~rep3_2_rep165(pbmb165)~~~dq242517201
+plasmidfinder~~~rep3_3_rep(pbt9727)~~~cp000047202
+plasmidfinder~~~rep3_4_cds38(pox2)~~~nc002146203
+plasmidfinder~~~rep4_1_cds2(pcrl291.1)~~~nc002799204
+plasmidfinder~~~rep4_2_cds3(pkc5b)~~~af378372205
+plasmidfinder~~~rep4_3_orf(pmbb1)~~~efu26268206
+plasmidfinder~~~rep5_1_rep(pmw2)~~~nc005011207
+plasmidfinder~~~rep5_2_rep(pn315)~~~ap003139208
+plasmidfinder~~~rep5_3_rep(pwbg752)~~~gq900394.1209
+plasmidfinder~~~rep5_4_rep(sap047a)~~~gq900405.1210
+plasmidfinder~~~rep5_5_rep(prj6)~~~af241888.2211
+plasmidfinder~~~rep5_6_rep(prj9)~~~af447813.1212
+plasmidfinder~~~rep5_7_rep(pje1)~~~af051916.1213
+plasmidfinder~~~rep6_1_repa(p703/5)~~~af109375214
+plasmidfinder~~~rep7_10_repc(pkh17)~~~nc_010284.1215
+plasmidfinder~~~rep7_12_rep(sap060b)~~~gq900417.1216
+plasmidfinder~~~rep7_13_rep(psbk203)~~~u35036.1217
+plasmidfinder~~~rep7_14_rep(mssa476)~~~bx571857.1218
+plasmidfinder~~~rep7_15_rep(ps0385-2)~~~am990994.1219
+plasmidfinder~~~rep7_16_repd~~~ay939911220
+plasmidfinder~~~rep7_17_repc(ps0385-1)~~~am990993.1221
+plasmidfinder~~~rep7_1_repc(cassette)~~~ab037671222
+plasmidfinder~~~rep7_2_cds2(pc221)~~~nc002129223
+plasmidfinder~~~rep7_3_cds1(pcw7)~~~j03323224
+plasmidfinder~~~rep7_4_repd(pk214)~~~nc009751225
+plasmidfinder~~~rep7_5_cds1(pkc5b)~~~af378372226
+plasmidfinder~~~rep7_6_orf(pkh1)~~~sau38656227
+plasmidfinder~~~rep7_7_rep(pkh7)~~~nc002096228
+plasmidfinder~~~rep7_8_cds4(ps194)~~~nc005564229
+plasmidfinder~~~rep7_9_cds3(pusa02)~~~nc007791230
+plasmidfinder~~~rep7b_1_repj(pc223)~~~nc_005243.1231
+plasmidfinder~~~rep7b_2_pvga~~~nc_011605.1232
+plasmidfinder~~~rep7b_3_sap089a~~~gq900440.1233
+plasmidfinder~~~rep8_1_ep002*(pam373)~~~nc002630234
+plasmidfinder~~~rep8_2_repa(pej97-1)~~~aj49170235
+plasmidfinder~~~rep9_1_repa(pad1)~~~l01794236
+plasmidfinder~~~rep9_2_prgw(pcf10)~~~ay855841237
+plasmidfinder~~~rep9_3_repa(ppd1)~~~d78016238
+plasmidfinder~~~rep9_4_repa2(ptef2)~~~ae016831239
+plasmidfinder~~~rep_1_pkpc-2~~~cp011573105
+plasmidfinder~~~repa_1_pkpc-2~~~cp013325240
+plasmidfinder~~~repa_2_pkpc-2~~~jx397875241
+plasmidfinder~~~repus10__cds25(pssp1)~~~ap008935242
+plasmidfinder~~~repus11__cds16(ptef3)~~~ae016832243
+plasmidfinder~~~repus12__rep(pub110)~~~af181950244
+plasmidfinder~~~repus15__orf(e.faecium287)~~~nzaaak010000287245
+plasmidfinder~~~repus16__repf(pe194)~~~m17811.1246
+plasmidfinder~~~repus17__rep(pkks825)~~~fn377602.2247
+plasmidfinder~~~repus18__rep(pkks825)~~~fn377602.2248
+plasmidfinder~~~repus19__rep(pdlk3)~~~gu562626.1249
+plasmidfinder~~~repus1__orf(e.faeciumcontig1258)_jdoe~~~250
+plasmidfinder~~~repus20__rep(pavx)~~~cp001784.1251
+plasmidfinder~~~repus21__rep(pwbg764)~~~gq900468.1252
+plasmidfinder~~~repus22__rep(sap015b)~~~gq900502.1253
+plasmidfinder~~~repus23__repa(sap099b)~~~gq900449.1254
+plasmidfinder~~~repus2__repa(pbi143)~~~bfu30316255
+plasmidfinder~~~repus3__repm200(pbm200)~~~dq437521256
+plasmidfinder~~~repus4__repa(pci2000)~~~af178424257
+plasmidfinder~~~repus5__cds20(petb)~~~nc003265258
+plasmidfinder~~~repus6__rep(pfl1)~~~nc002132259
+plasmidfinder~~~repus7__rep(phtbeta)~~~ab183714260
+plasmidfinder~~~repus8__orf1(pog32)~~~loppog32261
+plasmidfinder~~~repus9__rep(psk1)~~~af203376262
+plasmidfinder~~~trfa_1~~~cp11611106