# HG changeset patch
# User jjjjia
# Date 1535521321 14400
# Node ID 2cca036ceb91c8b72e84f529dc06286280033711
# Parent  e03c8f2d26296187b0d1e1e47554cbe11e950285
planemo upload

diff -r e03c8f2d2629 -r 2cca036ceb91 cpo_galaxy_prediction.py
--- a/cpo_galaxy_prediction.py	Tue Aug 28 23:21:34 2018 -0400
+++ b/cpo_galaxy_prediction.py	Wed Aug 29 01:42:01 2018 -0400
@@ -583,10 +583,10 @@
         resfinderCarbas.append(rFinder[keys])
     for keys in rgiAMR:
         if (rgiAMR[keys].Drug_Class.find("carbapenem") > -1 and rgiAMR[keys].AMR_Gene_Family.find("beta-lactamase") > -1):
-            if (rgiAMR[keys].Best_Hit_ARO not in carbapenamases):
+            if ((rgiAMR[keys].Best_Hit_ARO+ "(" + rgiAMR[keys].source + ")") not in carbapenamases):
                 carbapenamases.append(rgiAMR[keys].Best_Hit_ARO+ "(" + rgiAMR[keys].source + ")")
         else:
-            if (rgiAMR[keys].Best_Hit_ARO not in amrGenes):
+            if ((rgiAMR[keys].Best_Hit_ARO+ "(" + rgiAMR[keys].source + ")") not in amrGenes):
                 amrGenes.append(rgiAMR[keys].Best_Hit_ARO+ "(" + rgiAMR[keys].source + ")")
     #endregion