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annotate ipath.xml @ 36:2201c5d61f16 draft default tip

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planemo upload commit 16d0bc526ad02361a7c13231d4c50479c42d8d0f-dirty
author jjkoehorst
date Mon, 04 Jul 2016 10:53:52 -0400
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children
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1 <tool id="DIPath" name="iPath" version="2.01">
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2 <description>iPath Generator</description>
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3 <requirements>
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4 <container type="docker">jjkoehorst/sappdocker:IPATH</container>
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5 </requirements>
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6 <command interpreter="docker">java -jar /ipath/iPath-0.0.1-SNAPSHOT-jar-with-dependencies.jar
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7 #if $conditional.source_select==&quot;single&quot;
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8 -group1 '$conditional.input'
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9 #else
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10 -group1 $conditional.input1
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11 -group2 $conditional.input2
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12 #end if
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13 -o &quot;$outfile&quot; -format TURTLE
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14 </command>
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15 <inputs>
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16 <param label="Priam E-Value cutoff" name="Evalue" optional="False" size="60" type="float" value="1E-1"/>
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17 <conditional name="conditional">
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18 <param label="Analysis method" name="source_select" type="select">
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19 <option value="single">Single genome</option>
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20 <option value="group">Group comparison</option>
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21 </param>
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22 <when value="single">
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23 <param format="ttl" label="RDF Genome file" name="input" type="data"/>
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24 </when>
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25 <when value="group">
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26 <param format="rdf" label="RDF Genome file for group 1" multiple="True" name="input1" type="data"/>
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27 <param format="rdf" label="RDF Genome file for group 2" multiple="True" name="input2" type="data"/>
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28 </when>
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29 </conditional>
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30 </inputs>
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31 <outputs>
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32 <data format="tsv" label="iPath comparison" name="outfile"/>
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33 </outputs>
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34 <help>GROUP 1: #FF0000
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35 GROUP 2: #0000FF
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36 BOTH: #00FF00
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37
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38 </help>
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39 </tool>