Mercurial > repos > jjkoehorst > sapp

annotate rnaseq/cutadapt/test-data/Interval2Maf_pairwise_out.maf @ 14:41bfc53ee550

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removal of rnaseq
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 17:12:28 +0100
parents a712b378e090
children
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
1 ##maf version=1
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
2 a score=10458
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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3 s hg17.chrX 3816458 525 - 154824264 tGATGCACGTTTTCTCTTTTCATACTCATCTT--CAGTTATTCCTTGACACAAACCTGGTTA---CTAGTGCTATTGGCTACATGGCCCCTGTGCCTTAACTTCCCTCATGGCTCCTCCTCCCTGCAGCCTCTGAAGGTTCTCTGTGTAATGAATT--AATTAGCTTTGCTTTTTTCTCCCTTTCCCCC-----CCTCTTTTTCCTGGCCTCT---------AGAAGAAAACACCAGCAGCCCCAGCAAAGAAAACCAGCACTACCTTCAACATCGTGGGGACCACCTATCCCATCAACCTGGCCAAGGACACTGAATTTTCCACCATCTCCAAGGGCGCTGCTCCCAGTGCCTCCTCAACCCCAACAATCATTGCTTCACCCAAGGCCACCTACGTGCAGGACAGCCCGACTGAGACCAAGA---CCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTTCCTGTGCTCTTTGCCATATTCAATCTGGTCTATTGGGCCACATATGTCAACCGGGAGTCAGCTATCAAGGGCATGA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 s fr1.chrUn 343715247 529 - 349519338 TGGTCAACATTTTTTTCTTTTCTACTTTTCTTTTCAGGAACCGTTTCAGGCTAACATGGCCAGGATTAAAGATAT-GGTTAGGCTTTTGTTTTGTTCTTGTGTGTGTCGTGTCTCGTGGT----GTTGCTTCTATTTCCTCTTCATGAGTTCAAATGGAAGTATTGTTAAGTTTGTTGCCCCCGACCCTAACGACCTCTGCTTTATGGCCTCTTCTCTTTTCAGAGGAGAGAATCTGAGAATCTGACCAAAAAGACGAACAACACCTTCAACATCGTCGGGACGACCTACGCCATCAACGTGGCGAAGGACCAGGGCTTAACCACCATCTCCAAAAGCGCCACCACCGGCGCGCC----GGCCAAACAGCACTACCTGCACAAAA-----------TGGACGACCCCTACACAGAGGCCAAGAAATCCTACAACCGAGTCAGCATAGTGGACAAAATATCACGCATCATTTTCCCAGTTCTGTTCTTCATCTTCAACTTGGGCTACTGGGCCACATATATCAACAGGAAGCCCATTATTATGAACGCGA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
6 a score=12779
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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7 s hg17.chrX 3795168 357 - 154824264 aGGGCCATTTTGAGTGGGGTAAAGCTTCTCCTTTCAAATAGGAAA----TTAGTGATTTCATCG--AATAAGC-------TCTCAATGTCTTCCAGTTGCAACTGGTTCTCATCTTTCCTCT----CCTCAGGTGTCACCACTGTGCTTACCATGACCACCTTGAGTATCAGTGCCAGAAATTCCTTACCTAAAGTGGCATATGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCCACTGTCAACTATTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTGCCAGAGGCCCTGGAGATGAAGGTGAGATA----TAGCAAAAGAGAAACTGAGAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 s fr1.chrUn 343710815 364 - 349519338 TGAGCCAATTT--------TGAAGTGACAATTTTCAAATGTGCCACATTTTAGTAGCAGCAAAGTCAGAAAGCGACTTTTCCTCTACATCACTTCTCTGATCTGTGTTCTGATGTTTTCCTTTCATCCTCAGGGGTCACCACTGTGCTTACCATGACCACCCTGAGCATCAGTGCTAGAAACTCCCTCCCTAAGGTGGCCTACGCCACCGCCATGGACTGGTTCATGGCGGTGTGCTACGCCTTTGTCTTCTCTGCCTTGATTGAGTTTGCGACGGTCAACTACTTCACCAAACGCAGCTGGGCATGGGATGGGAAAAA------AGAGGGCATGGAAATAAGGGTGAGTGATTTTTAATCAAATATATACTGATACG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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10 a score=10363
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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11 s hg17.chrX 3787425 174 - 154824264 TACTCTCTCTTTAGGAGAATATGTCGTCATGACAACCCACTTCCATCTCAAGCGAAAAATTGGCTACTTTGTGATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCGTTCTGGCTCAACAGAGAGTCTGTTCCTGCCCGTACAGTCTTTGGTGAGTG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
12 s fr1.chrUn 343708230 174 - 349519338 TCCTCCCGCTGCAGGCGAATATGTTGTGATGACAACATATTTCCATTTGAAAAGGAAAATTGGCTATTTCGTGATTCAAACCTACCTCCCGTGCATCATGACTGTCATTCTGTCTCAAGTCTCCTTCTGGCTGAACCGAGAATCGGTCCCTGCTCGCACCGTGTTCGGTGAGTG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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13
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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14 a score=31
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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15 s hg17.chrX 3787284 100 - 154824264 ATTTTGTGATTATTAAAGGGCTCTAGTTATATGAACTTGGGAGATGCTGGAATATTGAATATAAG----ATTAAAGAGCTTTGTGAAT--------TGAATT-----GGGGCCCAAC
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
16 s fr1.chrUn 62078707 109 - 349519338 AGTTTGTGAGGCCTAAATGCCAAAAGT-------ACTTGA-ACAGGCTTAAGAATGGATCATGAATTTTCTTAAATAAATCTGTTAATCCAGAAAGTAAACTCTGGGGGGGTCCAGA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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17
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
18 a score=4963
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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19 s hg17.chrX 3776942 285 - 154824264 aCTTCAGTTGAAGACAGACCACATACCCAGAACTCTTTGAAGATGGAAGTTTTATTTCGATCTCATTTGAGTTTAGTATCAAGGGTAATCATTCTCCATTTCCTTCAACTTCTCTTTATTGACCCTTCTCTGCC--TTAGATGCCTATACAACAGCTGAAGTGGTTTATTCTTGGACTCTCGGAAAGAACAAATCCGTGGAAGTGGCACAGGATGGTTCTCGCTTGAACCAGTATGACCTTTTGGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGTA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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20 s fr1.chrUn 343707053 283 - 349519338 AACTTAAATCAACACCAAGTAAAGGCAAAGAATCTTTTAAACTAAGAA----TCTATTAAACTAGATAAACTAAAGCATCGACACTGACGCGTTGATCTGTCATCCACGTTTCCCCTGTTTCCTTTCCTTCTCCATCTAGACGCTTACACCAACAATGAGGTGATTTACCTGTGGACTCAGGGGGACGAGAGGTCTGTGTCTGTCGCAGAGGACGGCTCCAGGCTGAACCAGTATGATTTACTGGGACACGTTATTGGCAAAGAAACCATCAGCTCCAGCACAGGTA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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21
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
22 a score=5912
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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23 s hg17.chrX 3760375 93 - 154824264 TTAGGTTAACAATTCATGCTGAGTGTCCCATGCATTTGGAAGATTTTCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGAAGCTGTATGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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24 s fr1.chrUn 343706399 93 - 349519338 TCAGGTTGACCATCCACGCTGAGTGCCCCATGCACCTGGAGGACTTCCCCATGGACTCGCACGCCTGTCCTCTCAAGTTTGGAAGTTGTAAGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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25
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
26 a score=4332
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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27 s hg17.chrX 3733405 476 - 154824264 ATCAAGGAGAATTTGGGGAAACAGAGCATTAGGGAAGGAATAGATGGAAGAGAGGCATGCTTGTAATAAATTATAGGAAAGAGAAGAGTTTGAAAAAGAGATAAGAGTTCACACAATTGTGGAAAGAATGGAGTGGAGTATATGTAAACAGAAAAGAAGCTGTATGGAATGAGGTGGATGGAGGGACAGAATAATGAGGAGGAGAT---GTGGATGGGCAGAAGACAGTAAGCAAATGGAAGAGAAGCAAGA-----GGAAGGAGAGAGTAATGGGCAGGAAAGGATCTGAACCCAGTAGAGATTGCAAATAGTGAGGAGAAATAGAGAATGAATGAAAAGAACAGG--ATAGAGGAGAAACAACAATAAAAGGAATAAAGCATAGAGAATAGGTTTAAGTTTTGGAGGAGGGATAGAGAA-----GAGAGAAGAAAGGAGAGAGGATGGGAATATTGAAATACAAAAAAATAGAAGGTGCAGGTTGAGGA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
28 s fr1.chrUn 303515824 444 + 349519338 AACACGGAATATGGAGGGAAAACGGGGAATATGGAGGGAACAG--GGAATATGG-------------------TGGGAACACAGAGGGAATATGGAGGGAACACGGG-------GAATATGGAGGGAA---AACGGGGAATATGGAGGGAACGGGGAATATGGAGGGAACGAGGAATATGGAGGGAACGGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACAGGGAAT--ATGGAGGGAACGGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATAT--------------GGAGGGAACGAGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACGGGGTACTCAGTGAGAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
29
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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30 a score=719
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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31 s hg17.chrX 3731355 108 - 154824264 TATGTAAGTAGAATGCAGTCAAGAAACTTGTAGGTGGATAGGTAGAGGCAGAAGGAAGAGAGGAAGGACGTTCTAGACAGAGAAAACCAAGTGAGCAGTTGCAGGGAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
32 s fr1.chrUn 303515724 91 + 349519338 TATGGAGGGAACACG------GGGAATATGGAGG-GAATATAGAGGGGAGACGGGGAATATGGAGGGA------ACACGGGGAATATGGAGGGAACA----CAGGGAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
33
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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34 a score=3647
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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35 s hg17.chrX 3730591 447 - 154824264 CAAGGAAAAAAGGATAATACTTCAGAGAGAAGTTGGATGAGAGATGGGAGGAA--AAATGAACATAGAGGAGAAATGAGCATAGAGTGGAGGATAAAATAATGAAGAAGGAAAGTGGATAGAAGTGGGAAGATGAGGGTCAAGAGGGGAGGAGAAGACTAATTACACAGAGTACATAGAGGCATGTATATTGGAGAAATGAGAATGGTGAAAAGAAAGAGAGTATGAGAAGAGAGGACAAAAAGAGTAGAGAAGTTGAGAAGACAAAGGATAAGATGGTGTAAAATAAAGAAGCTAGATTAGATATTAGGATATTCTAAAGAGATAGGCGAATATAATGAAGTGGATGTAGTAGATGGGAATAAAGAGGAAAAGACATAGAGAAGTAGGGGAAGGGACATGGGAGGAGATGAACAAGAGGGAGGGAAATTGTAGACGAAAGAAAGAGAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
36 s fr1.chrUn 303515378 346 + 349519338 CACGGGGAATATGGCGGGAACACAGAGGGAATATGGAGGGAACACGGGGAATATGGAGGGAATATAGAGGGGAGACGGG--GAATATGGAGGG-AACATGGGGAATATGGAGGGAATATAGA---GGGGAGACGGGGAATATGGAGGGA--------------ACACGGGGAATATGGAGG---GAACACAGG------GAATATGGCGGGAACACAGGGAATATG----GAGGGAACACGGGGAATATGGAGG----GAACACAGGGAATATGGAGG----AAATATAGAGGGAAAACGGGAAAT------------------------------ATGGAGGGAATATGGT----GGGAACACAGGGAATA----------------TGGAGGGAACACGGGG----------AATATGGAGGGAA--TATAGAGGGGAGACGGGGAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
37
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
38 a score=13113
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
39 s hg17.chrX 3729219 238 - 154824264 CCCCTAGGAGTACACTATTGATGTATTTTTTCGGCAGACATGGCATGATGAAAGACTGAAATTTGATGGCCCCATGAAGATCCTTCCACTGAACAATCTCCTGGCTAGTAAGATCTGGACACCGGACACCTTCTTCCACAATGGCAAGAAATCAGTGGCTCATAACATGACCACGCCCAACAAGCTGCTCAGATTGGTGGACAACGGAACCCTCCTCTATACAATGAGGTCAGAGAGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
40 s fr1.chrUn 343703525 238 - 349519338 CCCTCAGGAGTACACCATCGACGTCTTCTTCCGTCAGAGTTGGAGAGACGAGAGGCTAAAGTTTGATGGACCTATGCAGGTTTTACCCCTGAACAACCTCCTGGCCAGTAAGATTTGGACTCCTGACACCTTTTTCCACAACGGAAAGAAGTCTGTTGCCCACAACATGACGACTCCGAACAAACTGCTGCGCCTGGTCGACAACGGCACGCTTCTATATACAATGAGGTGAGGCGGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
41
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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42 a score=3528
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
43 s hg17.chrX 3700391 307 - 154824264 AGTAAGTTGGCTGTCATTCAGAGT-ACTGCACTG-GACTCT---CTCTGAGCTAAGACAAAAGCCTTTCCTGACATTCTGCTTTTCTACTTTCTTTCACGCAGATGCAGTGACTGAAGTGAAGACTGACATCTACGTGACCAGTTTTGGCCCTGTGTCAGACACTGACATGGTA---------AGTTCTTGCAAAGGTAAATGTA---AAAGAGGATGCACT----AGACCAAAGAAAATAAATTGGAGCTTTCCTAAGGC---AGGGCCTTGTAGCTATATTCTAAGGAGTGGTCTTTTCTCA--TATGAATTT--CCTACCCTCGCCACCCTA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
44 s fr1.chrUn 241017738 330 - 349519338 ATTCATTTGTATGTCCTTTTGTGTTACTAAGCTGTGTCTCTAATTCCAGAGCGAAAACAAAACTCATTAGATTTGTGTCATTTGTTCATTTGCTC---CATAGGTCCTGTAACTGAGGTCAAGACAGATATTTATGTGACAAGTTTTGGGCCTGTGTCAGATGTTGAAATGGTACGTACACCGAGTGTTATTGATGCTAAATTTACCTCAGGAGGGGACACTTTTAATACCTTATAGAACATTATAGAGATTCTGGGACGTGCAAGGGCAGTGCAGGAAAGGCC--AGGTGGGGTCAGGTCTTAGTTATGAAGCGGACATACTGTCGCAGCCCTA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
45
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
46 a score=5471
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
47 s hg17.chrX 3639441 205 - 154824264 TCTTGAATTACGATATCTA-GTCATGT---ATTTTTTTTCCTATTAAGAACTATTATTTTTTTTCTTTTC---CTTGCATTGCCTCAGGCTGTCTC---CTAAGCATGCCCCAGATATTCCTGATGACAGCACTGACAACATCACTATCTTCACCAGAATCTTGGATCGTCTTCTGGACGGCTATGACAACCGGCTGCGACCTGGGCTTGGAGGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
48 s fr1.chrUn 333536350 213 + 349519338 TCATTAATCACAAAGACCACGTCATGTTTGACGTCTTGTGGTTTTAAGAAGCGCAAGCCTTGTTCTTTTCACTCTCCCCTTCCTCTCGTCTCTTCCAGGCTCTGCTTGTCCCAGTCTGAGCCGCCTAC--CAACGACAACAGCACAGTTTTCACCAGGATCCTGGATGGGCTCCTTGACGGTTACGACAACAGGCTGCGACCTGGGCTTGGGGGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
49