Mercurial > repos > jjkoehorst > sapp

annotate rnaseq/cutadapt/test-data/cf_maf_limit_to_species.dat @ 14:41bfc53ee550

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removal of rnaseq
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 17:12:28 +0100
parents a712b378e090
children
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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1 ##maf version=1
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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2 a score=85620.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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3 s hg17.chr7 127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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4 s panTro1.chr6 129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5 i panTro1.chr6 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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6 s rheMac2.chr3 165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 i rheMac2.chr3 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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8 s canFam2.chr14 52847428 108 - 63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9 i canFam2.chr14 I 4750 I 198
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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10 s bosTau2.chr4 19312415 103 - 69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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11 i bosTau2.chr4 M 120077 I 1
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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12 s rn3.chr4 56182200 95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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13 i rn3.chr4 I 3727 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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14
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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15 a score=113319.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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16 s hg17.chr7 127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta-------------------aaaa
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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17 s panTro1.chr6 129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta-------------------aaaa
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
18 i panTro1.chr6 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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19 s rheMac2.chr3 165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataactgttaaatctaggtgttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatgaaaa
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
20 i rheMac2.chr3 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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21 s rn3.chr4 56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAATATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG-GGAAGTGGTAATTGTTACATATGGGTAATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG-------------------AAAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
22 i rn3.chr4 C 0 I 959
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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23 s bosTau2.chr4 19312519 138 - 69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaagaattaa-------------------------tgatgc--aaatatgcaaaaagagta--cgttaaacctaa------------------------------------------------atttgCGATTttcattta-------------------aaaa
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
24 i bosTau2.chr4 I 1 I 19
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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25 s canFam2.chr14 52847734 160 - 63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-agtaaa-------------------------tgaagc--AAATATGGGAAGACAATAATCATTAAATCTAGGTGATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA-------------------AAAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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26 i canFam2.chr14 I 198 I 225
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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27
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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28 a score=94204.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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29 s hg17.chr7 127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
30 s panTro1.chr6 129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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31 i panTro1.chr6 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
32 s rheMac2.chr3 165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
33 i rheMac2.chr3 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
34 s rn3.chr4 56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
35 i rn3.chr4 I 959 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
36 s bosTau2.chr4 19312715 168 - 69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
37 i bosTau2.chr4 C 0 I 12
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
38 s canFam2.chr14 52848158 168 - 63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
39 i canFam2.chr14 C 0 C 0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
40