Mercurial > repos > jjkoehorst > sapp

annotate rnaseq/cutadapt/test-data/s2fq_paired_R3_QV.qualsolid @ 14:41bfc53ee550

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
removal of rnaseq
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 17:12:28 +0100
parents a712b378e090
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
1 # Mon Jan 19 06:35:55 2009 /share/apps/corona/bin/filter_fasta.pl --output=/data/results/0176/0176_20090114_1/skmusc_cov_25/results.01/primary.20090119120505312 --name=0176_20090114_1_skmusc_cov_25_ --tag=R3 --minlength=25 --mask=1111111111111111111111111 --prefix=G /data/results/0176/0176_20090114_1/skmusc_cov_25/jobs/postPrimerSetPrimary.1512/rawseq
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
2 # Cwd: /home/pipeline
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
3 # Title: 0176_20090114_1_skmusc_cov_25_
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 >1378_11_329_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5 2 2 2 2 3 3 2 3 2 3 5 2 2 2 2 2 3 6 3 2 3 2 2 2 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
6 >1378_17_1788_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 2 2 3 2 3 2 2 2 3 2 3 2 2 2 2 2 2 2 3 2 3 2 2 2 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 >1378_25_2035_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9 2 2 2 2 2 2 2 4 2 3 4 2 3 3 2 2 2 7 3 2 2 2 5 5 4
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
10 >1378_28_770_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
11 2 2 2 2 3 2 2 4 4 3 2 2 2 2 4 2 4 3 2 4 4 2 7 3 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
12 >1378_33_1945_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
13 26 13 21 26 30 26 20 20 21 24 22 29 23 22 22 24 19 20 22 24 23 21 17 21 19
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
14 >1378_34_789_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
15 3 2 2 2 4 3 4 3 4 4 2 2 2 3 2 2 2 2 3 2 2 2 3 2 5
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
16 >1378_35_263_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
17 7 3 4 4 5 11 8 18 14 8 4 3 12 21 6 3 5 20 5 2 3 6 6 20 13
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
18 >1378_43_186_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
19 2 3 4 2 3 2 2 2 2 2 2 2 2 4 2 2 4 2 3 2 2 2 6 2 6
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
20 >1378_51_1671_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
21 2 2 2 4 3 3 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 15 2 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
22 >1378_56_324_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
23 2 2 3 2 2 2 2 2 3 3 3 2 3 3 3 3 2 2 4 2 2 2 9 7 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
24 >1378_56_773_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
25 4 2 2 4 4 2 5 3 2 2 2 3 2 3 2 2 4 3 2 2 2 2 4 4 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
26 >1378_62_2027_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
27 10 9 2 2 8 11 14 4 2 2 3 8 2 4 2 2 16 3 2 6 4 13 2 5 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
28 >1378_62_2029_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
29 8 14 3 3 3 28 7 2 2 2 2 4 2 2 2 2 8 3 3 4 3 12 5 4 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
30 >1378_67_1795_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
31 33 31 31 13 30 22 31 31 31 13 31 25 31 32 27 27 29 29 28 29 22 15 27 31 22
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
32 >1378_68_466_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
33 12 14 2 2 3 15 24 2 3 2 13 28 3 2 3 22 21 10 3 4 16 6 2 2 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
34 >1378_68_1692_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
35 4 2 2 2 4 4 3 4 4 2 2 4 3 2 3 2 2 3 2 2 2 3 3 2 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
36 >1378_80_664_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
37 4 4 2 2 4 11 4 3 3 2 5 3 3 2 2 2 3 2 3 4 2 2 6 4 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
38 >1378_85_1786_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
39 5 11 6 5 14 4 14 31 11 5 16 11 5 6 14 8 5 11 21 5 5 16 8 7 7
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
40 >1378_86_1011_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
41 11 25 3 2 2 2 8 4 2 2 3 24 3 2 2 2 16 3 3 2 3 17 2 2 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
42 >1378_86_1789_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
43 19 16 13 20 16 14 5 4 2 6 3 11 9 30 4 2 21 5 15 3 3 20 11 17 15
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
44 >1378_91_1596_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
45 11 6 29 4 14 18 4 28 7 8 23 6 2 13 4 30 20 15 3 5 20 29 4 8 4
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
46 >1378_94_1595_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
47 18 11 23 31 21 6 29 23 27 22 21 29 31 31 7 12 29 24 8 22 6 9 24 19 16
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
48 >1378_95_1039_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
49 6 5 2 2 11 13 14 2 3 5 8 21 2 2 10 11 6 2 3 3 15 7 2 2 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
50 >1378_95_1767_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
51 8 6 11 11 17 6 7 16 15 14 29 25 28 14 22 8 13 18 5 4 21 5 8 5 21
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
52 >1378_96_1037_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
53 13 6 3 2 10 2 7 2 2 12 4 20 2 2 10 9 5 2 2 2 12 13 3 3 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
54 >1378_96_1764_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
55 13 19 28 6 17 23 29 13 31 19 23 23 16 33 23 15 22 25 23 17 17 29 4 8 16
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
56 >1378_98_1574_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
57 3 10 4 4 3 2 8 2 2 4 2 2 3 2 2 2 2 4 2 2 2 3 4 3 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
58 >1378_107_1647_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
59 3 2 2 2 6 3 3 2 3 3 3 7 2 4 2 2 2 7 2 3 2 2 3 4 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
60 >1378_111_829_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
61 3 3 2 2 6 5 2 2 2 3 2 2 8 2 4 7 3 2 3 4 2 3 6 4 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
62 >1378_111_1900_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
63 6 8 3 8 6 2 4 3 2 2 2 2 2 2 2 2 3 6 2 5 4 3 2 7 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
64 >1378_112_1483_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
65 2 2 3 2 8 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 4 2 4 6 4
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
66 >1378_125_1287_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
67 2 2 2 3 4 4 2 3 2 2 2 3 2 2 3 3 2 5 4 2 2 3 7 4 4
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
68 >1378_126_468_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
69 30 31 31 33 31 31 31 29 31 17 29 16 10 30 25 24 17 8 29 31 23 5 5 27 10
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
70 >1378_127_664_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
71 2 2 4 3 4 2 5 2 2 3 4 2 4 4 2 2 2 3 3 2 2 2 8 12 6
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
72 >1378_129_463_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
73 13 11 8 5 17 15 4 23 6 7 5 18 20 12 9 9 9 16 12 17 5 10 20 16 15
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
74 >1378_129_875_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
75 4 2 2 2 8 2 2 2 10 2 2 2 3 2 2 3 2 5 4 2 2 3 11 2 3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
76 >1378_140_1251_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
77 2 2 4 2 4 3 2 2 3 3 3 2 2 2 2 2 2 13 3 3 3 4 2 4 7
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
78 >1378_141_809_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
79 2 2 2 4 8 2 2 3 3 2 2 2 2 2 4 3 2 3 2 4 4 2 6 2 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
80 >1378_144_983_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
81 4 2 7 2 4 2 2 2 2 2 7 3 2 4 2 2 3 3 2 4 2 2 4 2 8
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
82 >1378_153_270_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
83 4 4 3 2 2 7 3 2 2 2 2 2 2 5 2 2 3 5 3 3 3 3 4 2 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
84 >1378_155_1689_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
85 31 31 19 31 31 28 21 28 31 31 27 19 25 31 31 21 23 16 31 31 31 13 17 19 13
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
86 >1378_157_1580_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
87 2 2 4 3 5 4 2 3 3 6 4 3 4 2 3 2 2 9 2 4 3 3 3 3 2
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
88 >1378_161_317_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
89 8 13 5 4 6 11 6 7 31 6 6 30 22 14 14 10 5 8 10 17 13 10 8 15 8
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
90 >1378_177_735_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
91 31 31 31 33 29 31 32 34 24 31 32 27 33 23 31 28 24 29 22 31 20 8 29 11 15
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
92 >1378_181_1684_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
93 2 3 2 2 6 3 4 6 2 2 4 2 2 3 4 3 2 3 3 2 2 2 2 3 9
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
94 >1378_187_1407_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
95 2 2 2 2 2 5 2 2 3 3 2 2 2 3 2 2 2 2 2 4 2 2 4 4 8
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
96 >1378_203_721_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
97 24 24 27 5 13 14 16 5 31 26 16 17 6 8 30 27 16 6 11 30 14 8 5 14 13
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
98 >1378_206_2039_R3
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
99 31 30 28 29 29 30 28 25 26 27 29 29 19 25 25 27 28 20 21 16 24 24 7 15 20