annotate sappDocker/locustagger.xml @ 32:7b519ee3ea3b draft

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author jjkoehorst
date Wed, 29 Jun 2016 01:37:28 -0400
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1 <tool id="DLocus" name="Locus tags inference from GBK import" version="0.1">
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2 <description>Locus tagger inference from original annotation</description>
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3 <requirements>
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4 <container type="docker">jjkoehorst/sappdocker:LOCUSTAGGER</container>
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5 </requirements>
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6 <command interpreter="docker">java -jar /locustagger/target/LocusTagger-0.1-jar-with-dependencies.jar
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7 '-input' '$input' -format 'TURTLE' -output '$output' -prefix '$prefix'</command>
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8 <inputs>
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9 <param format="ttl" label="RDF file" name="input" type="data"/>
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10 <param format="text" label="PREFIX identifier" name="prefix" size="60" type="text"/>
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11 </inputs>
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12 <outputs>
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13 <data format="ttl" label="LocusTagger: ${input.name}" name="output"/>
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14 </outputs>
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15 <help>Locus tag inference from original genbank/embl that was converted
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16 to RDF
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17 </help>
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18 </tool>