annotate rnaseq/cutadapt/test-data/sift_variants_result.tab @ 11:a712b378e090

cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
parents
children
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
1 #Chrom Position Strand Allele Codons Transcript ID Protein ID Substitution Region dbSNP ID SNP Type Prediction Score Median Info Num seqs at position Gene ID User Comment
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
2 chr3 81780820 + T/C AGA-gGA ENST00000264326 ENSP00000264326 R190G EXON CDS rs2229519:C Nonsynonymous DAMAGING 0.04 3.06 149 ENSG00000114480
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
3 chr2 230341630 + G/T - ENST00000389045 ENSP00000373697 NA EXON CDS rs1803846:A Unknown Not scored NA NA NA ENSG00000153827
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 chr2 43881517 + A/T ATA-tTA ENST00000260605 ENSP00000260605 I230L EXON CDS rs11556157:T Nonsynonymous TOLERATED 0.47 3.19 7 ENSG00000138036
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5 chr2 43857514 + T/C TTT-TcT ENST00000260605 ENSP00000260605 F33S EXON CDS rs2288709:C Nonsynonymous TOLERATED 0.61 3.33 6 ENSG00000138036
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
6 chr6 88375602 + G/A GTT-aTT ENST00000257789 ENSP00000257789 V217I EXON CDS rs2307389:A Nonsynonymous TOLERATED 0.75 3.17 13 ENSG00000135336
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 chr22 29307353 + T/A ACC-tCC ENST00000335214 ENSP00000334612 T264S EXON CDS rs42942:A Nonsynonymous TOLERATED 0.4 3.14 23 ENSG00000100029
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 chr10 115912482 + C/A CGA-CtA ENST00000369285 ENSP00000358291 R179L EXON CDS rs12782946:T Nonsynonymous TOLERATED 0.06 4.32 2 ENSG00000165813
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9 chr10 115900918 + G/A CAA-tAA ENST00000369287 ENSP00000358293 Q271* EXON CDS rs7095762:T Nonsynonymous N/A N/A N/A N/A ENSG00000165813
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
10 chr16 69875502 + G/T ACA-AaA ENST00000338099 ENSP00000337512 T608K EXON CDS rs3096381:T Nonsynonymous TOLERATED 0.12 3.41 3 ENSG00000180917
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
11 chr16 69876078 + T/C AAT-AgT ENST00000338099 ENSP00000337512 N416S EXON CDS rs3803704:C Nonsynonymous TOLERATED 1 3.15 26 ENSG00000180917
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
12 chr16 69877147 + G/A CTT-tTT ENST00000338099 ENSP00000337512 L60F EXON CDS rs3096380:A Nonsynonymous TOLERATED 0.31 3.33 31 ENSG00000180917
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
13 chr22 49000825 + T/A AGT-tGT ENST00000248846 ENSP00000248846 S1364C EXON CDS rs5771107:A Nonsynonymous TOLERATED 0.18 3.38 6 ENSG00000128159
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
14 chr22 49000551 + T/G ACT-cCT ENST00000248846 ENSP00000248846 T1377P EXON CDS rs11703226:C Nonsynonymous TOLERATED 0.27 3.38 6 ENSG00000128159
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
15 chr22 49006739 + A/C TTG-TgG ENST00000248846 ENSP00000248846 L567W EXON CDS rs4838865:G Nonsynonymous TOLERATED 0.16 3.15 10 ENSG00000128159
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
16 chr11 17476318 + C/G GAG-GAc ENST00000005226 ENSP00000005226 E819D EXON CDS rs1064074:G Nonsynonymous TOLERATED 0.08 3.95 12 ENSG00000006611
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
17 chr4 124033758 + C/A CGG-CtG ENST00000339154 ENSP00000344011 R40L EXON CDS rs1048201:T Nonsynonymous DAMAGING 0.01 3.14 20 ENSG00000170917
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
18 chr3 185041096 + C/G GTG-cTG ENST00000311101 ENSP00000310676 V212L EXON CDS rs3732581:G Nonsynonymous TOLERATED 0.58 2.94 30 ENSG00000175193
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
19 chr17 8101874 + C/T CCA-CtA ENST00000314666 ENSP00000313490 P367L EXON CDS rs4791641:T Nonsynonymous TOLERATED 0.11 3.02 34 ENSG00000178921
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
20 chr6 33156520 + C/T GCG-GtG ENST00000308461 ENSP00000311794 A65V EXON CDS rs1042121:T Nonsynonymous TOLERATED 1 3.39 397 ENSG00000168383
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
21 chr16 23556917 + T/C TAC-TgC ENST00000261584 ENSP00000261584 Y28C EXON CDS novel Nonsynonymous DAMAGING *Warning! Low confidence. 0 4.32 1 ENSG00000083093