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comparison genetic_elements/aragorn/aragorn.xml @ 18:27a2341f86cc

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aragorn addition
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 17:24:22 +0100
parents 2561c51e6605
children
comparison
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17:2561c51e6605 18:27a2341f86cc
38 <param name='tRNA' type='boolean' label='Search for tRNA genes (-t)' truevalue='-t' falsevalue='' checked="true" help='' /> 38 <param name='tRNA' type='boolean' label='Search for tRNA genes (-t)' truevalue='-t' falsevalue='' checked="true" help='' />
39 </inputs> 39 </inputs>
40 <outputs> 40 <outputs>
41 <data format="rdf" name="output" label="Aragorn: ${input.name}"></data> 41 <data format="rdf" name="output" label="Aragorn: ${input.name}"></data>
42 </outputs> 42 </outputs>
43 <tests>
44 <test>
45 <param name="input" value="test-data/NC_017117.fna"/>
46 <output name="$output" file="NC_017117.rdf"/>
47 <output name="$genbank_gencode" value="11"/>
48 <output name="$tmRNA" value="-m"/>
49 <output name="$tRNA" value="-t"/>
50 <output name="$topology" value="-c"/>
51 </test>
52 </tests>
53
43 <help> 54 <help>
44 55
45 **What it does** 56 **What it does**
46 57
47 Aragorn_ predicts tRNA (and tmRNA) in nucleotide sequences. 58 Aragorn_ predicts tRNA (and tmRNA) in nucleotide sequences.