Mercurial > repos > jjkoehorst > sapp
comparison sappDocker/locustagger.xml @ 31:957156367442 draft
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| author | jjkoehorst |
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| date | Wed, 29 Jun 2016 01:36:58 -0400 |
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| 30:0a947cb25a3d | 31:957156367442 |
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| 1 <tool id="DLocus" name="Locus tags inference from GBK import" version="0.1"> | |
| 2 <description>Locus tagger inference from original annotation</description> | |
| 3 <requirements> | |
| 4 <container type="docker">jjkoehorst/sappdocker:LOCUSTAGGER</container> | |
| 5 </requirements> | |
| 6 <command interpreter="docker">java -jar /locustagger/target/LocusTagger-0.1-jar-with-dependencies.jar | |
| 7 '-input' '$input' -format 'TURTLE' -output '$output' -prefix '$prefix'</command> | |
| 8 <inputs> | |
| 9 <param format="ttl" label="RDF file" name="input" type="data"/> | |
| 10 <param format="text" label="PREFIX identifier" name="prefix" size="60" type="text"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="ttl" label="LocusTagger: ${input.name}" name="output"/> | |
| 14 </outputs> | |
| 15 <help>Locus tag inference from original genbank/embl that was converted | |
| 16 to RDF | |
| 17 </help> | |
| 18 </tool> |