Mercurial > repos > jjkoehorst > sapp

comparison rnaseq/cutadapt/test-data/4.maf @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
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equal deleted inserted replaced
10:3378d12591ea 11:a712b378e090
1 ##maf version=1
2 a score=121487.000000
3 s hg17.chr7 127471195 331 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
4 s panTro1.chr6 129885076 331 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
5 i panTro1.chr6 C 0 C 0
6 s rheMac2.chr3 165787989 330 + 196418989 gcttgccatcttttgatgctcttgggaatccagcagctgtcaccat-taaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCATAGGCAtgagtcaggccatagtgctggacccacagaattatgagctaaataagtagtgttgggttaagtcactaagttttaggcatagtgtgttatgtagcTCACAAACATATAAGACTGTGTGTTTTTTGACTGGAGGAAGAGATGCCATAAAGACCACCTTTTGAAACTTCTCAAATACTGCCATTGATGTGCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
7 i rheMac2.chr3 C 0 C 0
8 s rn3.chr4 56178191 282 + 187371129 CTTCACTCTCATTTGCTGTT----------------CTGTCACTATGGAGACAAACACAGGCTAGCCCAGTTACTATCTTGATCACAGCAGCTGT----CAGCTAGCTGCCACTCACAGGAATAAGGCCATACCATT-GATCCACTGAACCTTGATCTAGGAATTTGGC----------------------TGGGGCCAGTTTGCGGTGTCACTCATGA--CTCTAAGATTGTGTGTTTG----CTCCAGGAAGAGACGGCAAGAGGATTACCTTTAAAAGGTTCGG-AGTCTAGCTGTAGACAGCCCAATGGG---------------------------------------------------------TATAAC---------AATACTCACTAA
9 i rn3.chr4 C 0 I 3727
10 s mm7.chr6 28984529 357 + 149646834 CTCCACTCTCGTTTGCTGTT----------------CTGTCACCATGGAAACAAACG-AGGGTGGTCCAGTTACTATCTTG---ACTGCAGCTGG----CAGTCAGTTGCCACT--CAGGAATAAGGCTATGCCATT-GATCCACTGAACCGTGATCTGGAAACCTGGCTGTTGTTT-------CAAGCCTTGGGGCCAGTTTGCGGTGTTACTCATGA--CTCTAAGATCGTGTGCTTG----CTGCAGGAAGAGACAGCAAGGGGGTTACATTTAAAAAGCCCCC-AGTTTAGCTATAGGCAGGCCAACAGGTGTAAAAATACTCACTAGTAATGGGCTGAACTCATGGAGGTAGCATTAGTGAGACACTGTAACTGTTTTTTTAAAAATCACTAA
11 i mm7.chr6 C 0 C 0
12 e monDom2.scaffold_22 30245538 51850 - 46578359 I
13 e echTel1.scaffold_309554 3896 34801 + 42008 I
14 e dasNov1.scaffold_60130 12867 0 - 12883 I
15 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
16 e canFam2.chr14 52842678 4750 - 63938239 I
17 e bosTau2.scaffold741 358386 0 + 359342 I
18 e oryCun1.scaffold_213837 7852 41067 + 53501 I
19
20 a score=20323.000000
21 s hg17.chr7 127471526 58 + 158628139 AATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
22 s mm7.chr6 28984886 54 + 149646834 ----AACGTTTCATTGATTGCTCATCATTTAAAAAAAGAAATTCCTCAGTGGAAGAGG
23 i mm7.chr6 C 0 I 5774
24 s rheMac2.chr3 165788319 58 + 196418989 AATTTGTGGTTTATTTATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
25 i rheMac2.chr3 C 0 C 0
26 s panTro1.chr6 129885407 58 + 161576975 AATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
27 i panTro1.chr6 C 0 C 0
28 e monDom2.scaffold_22 30245538 51850 - 46578359 I
29 e echTel1.scaffold_309554 3896 34801 + 42008 I
30 e dasNov1.scaffold_60130 12867 0 - 12883 I
31 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
32 e canFam2.chr14 52842678 4750 - 63938239 I
33 e rn3.chr4 56178473 3727 + 187371129 I
34 e bosTau2.scaffold741 358386 0 + 359342 I
35 e oryCun1.scaffold_213837 7852 41067 + 53501 I
36
37 a score=85620.000000
38 s hg17.chr7 127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
39 s panTro1.chr6 129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
40 i panTro1.chr6 C 0 C 0
41 s rheMac2.chr3 165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt
42 i rheMac2.chr3 C 0 C 0
43 s canFam2.chr14 52847428 108 - 63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt
44 i canFam2.chr14 I 4750 I 198
45 s bosTau2.chr4 19312415 103 - 69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt
46 i bosTau2.chr4 M 120077 I 1
47 s rn3.chr4 56182200 95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT
48 i rn3.chr4 I 3727 C 0
49 s dasNov1.scaffold_256527 298 94 + 1837 GAGACATTT-GGAGAAATTTG-----------Aatt--tcatgatgttaaggaattacttttgtatgatgatggtcttgtggctat-gtagaatttcttccgtg-tttta
50 i dasNov1.scaffold_256527 n 0 C 0
51 e monDom2.scaffold_22 30245538 51850 - 46578359 I
52 e echTel1.scaffold_309554 3896 34801 + 42008 I
53 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
54 e mm7.chr6 28984940 5774 + 149646834 I
55 e oryCun1.scaffold_213837 7852 41067 + 53501 I
56
57 a score=113319.000000
58 s hg17.chr7 127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta--------------------------aaaa-
59 s panTro1.chr6 129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta--------------------------aaaa-
60 i panTro1.chr6 C 0 C 0
61 s rheMac2.chr3 165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataactgttaaatctaggt-----gttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatg-------aaaa-
62 i rheMac2.chr3 C 0 C 0
63 s rn3.chr4 56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAA----------TATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG---GGAAGTGGTAATTGTTACATATGGGT-----AATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG--------------------------AAAA-
64 i rn3.chr4 C 0 I 959
65 s bosTau2.chr4 19312519 138 - 69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaa----------gaattaa-------------------------tgatgc--aaatatg--caaaaagagta--cgttaaacctaa-----------------------------------------------------atttgCGATTttcattta--------------------------aaaa-
66 i bosTau2.chr4 I 1 I 19
67 s canFam2.chr14 52847734 160 - 63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-----------agtaaa-------------------------tgaagc--AAATATG--GGAAGACAATAATCATTAAATCTAGGT-----GATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA--------------------------AAAA-
68 i canFam2.chr14 I 198 I 225
69 s dasNov1.scaffold_256527 393 232 + 1837 agacgcatgctgaagcatgta---aggataaaatgtcgtggtgtttgtaatttattctaaaacattttagccaaaaacaaataaataaataaa-------------------------tgaagc--aaatatgggggaaatgtttaattgttaaatctagatttaacacggtatataccgtgcttcattatactagtctctacttttccatgtgtttgaaattttCATTAAAATGTTTGTTTGTTGTCTGTTTTAATGAAAT
70 i dasNov1.scaffold_256527 C 0 C 0
71 e monDom2.scaffold_22 30245538 51850 - 46578359 I
72 e echTel1.scaffold_309554 3896 34801 + 42008 I
73 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
74 e mm7.chr6 28984940 5774 + 149646834 I
75 e oryCun1.scaffold_213837 7852 41067 + 53501 I
76
77 a score=24225.000000
78 s hg17.chr7 127471871 39 + 158628139 actttgagctagacaccaggctatgagcta-ggagcatag
79 s rheMac2.chr3 165788684 39 + 196418989 actttgagctagataccaggttatgagcta-ggagcatag
80 i rheMac2.chr3 C 0 C 0
81 s panTro1.chr6 129885752 39 + 161576975 actttgagctagacaccaggctatgagcta-ggagcatag
82 i panTro1.chr6 C 0 C 0
83 s bosTau2.chr4 19312676 39 - 69556449 tcttcgtgcaacgcacggggctatcaatgt-gggatacag
84 i bosTau2.chr4 I 19 C 0
85 s canFam2.chr14 52848119 39 - 63938239 ACATCAtgctagatcctggactatgagctg-ggtatatag
86 i canFam2.chr14 I 225 C 0
87 s dasNov1.scaffold_256527 625 40 + 1837 CCTTTGTGCTAGCCACTGGGATGAAAGCTAGGGAACACAG
88 i dasNov1.scaffold_256527 C 0 C 0
89 e monDom2.scaffold_22 30245538 51850 - 46578359 I
90 e echTel1.scaffold_309554 3896 34801 + 42008 I
91 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
92 e rn3.chr4 56182489 959 + 187371129 I
93 e mm7.chr6 28984940 5774 + 149646834 I
94 e oryCun1.scaffold_213837 7852 41067 + 53501 I
95
96 a score=94204.000000
97 s hg17.chr7 127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG
98 s panTro1.chr6 129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG
99 i panTro1.chr6 C 0 C 0
100 s rheMac2.chr3 165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G
101 i rheMac2.chr3 C 0 C 0
102 s mm7.chr6 28990714 161 + 149646834 caaaaaccaa------------------------------------------------------------------------------------------------aaaaACCTATAGC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAACATGCATCCGCTAGAAAGTCCCAAGTACACTATGACAGTTG--CCCAGGCCCCGCCTTAAACCTGGTTTTCCTGGTTTCTTTCA---CATCATTACCACGAATATATTTCCTCAAG
103 i mm7.chr6 I 5774 C 0
104 s rn3.chr4 56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG
105 i rn3.chr4 I 959 C 0
106 s bosTau2.chr4 19312715 168 - 69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG
107 i bosTau2.chr4 C 0 I 12
108 s canFam2.chr14 52848158 168 - 63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA
109 i canFam2.chr14 C 0 C 0
110 s dasNov1.scaffold_256527 665 121 + 1837 CAGTGAGCAA-----------------------------------------------------------------------------------------------CAGCCTGGCTCCGT-CC--GGGGGCCGCTCAGCAGCTC-GGGAGCGTGGAGACG---GGAAGTCTGTCACGCGATGCG-----------CTGGGCCCG------------CTGTTCCCGCCCCCCTCC---CCCC----------------TTTCCCAAG
111 i dasNov1.scaffold_256527 C 0 C 0
112 e monDom2.scaffold_22 30245538 51850 - 46578359 I
113 e echTel1.scaffold_309554 3896 34801 + 42008 I
114 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
115 e oryCun1.scaffold_213837 7852 41067 + 53501 I
116
117 a score=97835.000000
118 s hg17.chr7 127472074 184 + 158628139 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-ccc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt
119 s panTro1.chr6 129885955 184 + 161576975 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt
120 i panTro1.chr6 C 0 C 0
121 s rheMac2.chr3 165788885 184 + 196418989 TTTTAAA------CATTTACTCTCCCAGTAGCCTTGCATCTCGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTGTACGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccctgtgttcttggcactggaaaagtaccaggacttaaatagta
122 i rheMac2.chr3 C 0 C 0
123 s mm7.chr6 28990875 150 + 149646834 TTTAAAGAAAGTACCCCCTCCTTTCCAGT-GCCTCAAATCTAGAAGAATATTCATAGTGAAGT-GC------------------------ACAGCCGGGTGGTGCATGGTA-ATCTGGAAGTCACCTCTGCAAATCTT-TCC----------------TGTTGGTGCTGTGAAGGCACCAGGACTTCAAGAGTA
124 i mm7.chr6 C 0 C 0
125 s rn3.chr4 56183705 174 + 187371129 TTTAAAAGAAGT-CCCACTCCTTTCCAGT-GCCCTAGATCTAGAAGCACATTCATAATGATGT-ACAC-----TAACCC----------GACAGCTGTGTGGTATATGGTA-TCCCGGAAGTCACCTCAGCAAACCTT-TCCCGGGGAACCTACATGGTGTTGGTGCTGTGAAGGTACCAGGTTGTCAAGGGTA
126 i rn3.chr4 C 0 C 0
127 s canFam2.chr14 52848326 170 - 63938239 TTTTAAA------TATCTGC-TTCCCGGTGGCCTTGAGTCTAGAGGAGTCCCCCCACTATGGTGGCACTAATACTGAAGGTCAGAAATAATCAGTTCTGTGGTGCATGTTGCCCCTGAGGTTCTGTTCGGGAAACTTC-TTC-TGAGCAC----ATGCACCTGGCACTGCAAACGTACCAGGA-----------
128 i canFam2.chr14 C 0 I 195
129 s dasNov1.scaffold_256527 786 178 + 1837 TTTTAAA------AATTTACCTTCCCAGTGGCGGTGAATCCGGAGGAATACGGAAACTGGGGC-GCACTACCATGACACGTGTCAAA-AATCAGTTCCGTGGTCCGTGGAGGGCCTGGGGTTC------GAAAATCTTGTCC-CGAGCACCCCCGTGCGCCTGGCACCGCGACAGTGACAGGACTGAAGCGTG-
130 i dasNov1.scaffold_256527 C 0 C 0
131 e monDom2.scaffold_22 30245538 51850 - 46578359 I
132 e echTel1.scaffold_309554 3896 34801 + 42008 I
133 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
134 e bosTau2.chr4 19312883 12 - 69556449 I
135 e oryCun1.scaffold_213837 7852 41067 + 53501 I
136
137 a score=14531.000000
138 s hg17.chr7 127472258 22 + 158628139 gatggccca-atccctgtcctct-
139 s panTro1.chr6 129886139 22 + 161576975 gatggccca-atccctgtcctct-
140 i panTro1.chr6 C 0 C 0
141 s rheMac2.chr3 165789069 22 + 196418989 gatggccca-atccctgtcctct-
142 i rheMac2.chr3 C 0 C 0
143 s mm7.chr6 28991025 23 + 149646834 AATGGCAGAGGGCTCTGTTCTCT-
144 i mm7.chr6 C 0 I 471
145 s rn3.chr4 56183879 23 + 187371129 AATGGCAGAGGCCCCTGTTCTCT-
146 i rn3.chr4 C 0 C 0
147 s canFam2.chr14 52848691 22 - 63938239 GGAGACTTG-ATGCCTGCCTTCC-
148 i canFam2.chr14 I 195 I 3
149 s dasNov1.scaffold_256527 964 23 + 1837 GACGGCCAG-ACCTCTGCCCTCGG
150 i dasNov1.scaffold_256527 C 0 C 0
151 e monDom2.scaffold_22 30245538 51850 - 46578359 I
152 e echTel1.scaffold_309554 3896 34801 + 42008 I
153 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
154 e bosTau2.chr4 19312883 12 - 69556449 I
155 e oryCun1.scaffold_213837 7852 41067 + 53501 I
156
157 a score=182774.000000
158 s hg17.chr7 127472280 401 + 158628139 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGGCCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgcaaatttcctgt
159 s panTro1.chr6 129886161 401 + 161576975 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt
160 i panTro1.chr6 C 0 C 0
161 s rheMac2.chr3 165789091 401 + 196418989 taaaacctaatggaggagatggaATG-GGTCACCCAACCCGGACTGAGAGACAGGAATTAGCTGCAAGGGTAACCAGGACAAGCTTCTCTA---ATGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCTGGGAGAAGCGATGGATTCGTAGTTGGGCATCCCCACAGAGGGACTGGAAAGAAAAAAGACCTGGAGGAACCA------ATGTGC-AATGTATGTGTGTTTCCTGGTTcaagggctggcaaactttctcta--aagggccagatagaaaacattttaggctttgtaagccaagg---caaaatcgaggag-attacatgggtacttatacaacaagaataaacaatt---tccacaa--tttttattcacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt
162 i rheMac2.chr3 C 0 C 0
163 s rn3.chr4 56183902 317 + 187371129 ------------------------------------GTCCATAGTCAAAG------------------------------AAGCCTCTCAG---ATGGAG--AGCAGGGCCTATGCAAAAGAGGGGGCTTCTGTAGGCAGAAGGGATGGACTAGCCTCCGGACATAGCCATAGAGAGGCTGGCAGGACTGAGACCCAGGAGAAGCCAGCGCAGGTGTGCGGGCGTGTGTATATTTCATAGTTTGCAGGTTGG----------------------------CAAACAATTCCTGCTTTGCAGGCCAAGA---GGAAACTGAAGGTGACCCCGTGAGTGCTTAC---ACAAGAGAAAACAAG-------ACAA-TTTTTGGTTGACCAAATTCAGAA---CTTTATTTGAGGATGC---TAAAGTTTAAATTTCTTTT
164 i rn3.chr4 C 0 I 329
165 s canFam2.chr14 52848716 380 - 63938239 TACAGCCTGTGGGCAGAGGTGGGAAGAGGTCACGCAAGCCAGTTGGAATGAGGGGAGTTGGCTGGAAAGGTGACCAGGACAAGCTACTTCAACCAGGAAG--AAGAGACCCCG-GTG----------------CTTGGAGAAGGCCTGATTGAGCAGTCCTGCATGCCCGCCCAC-GACTGGCAGGAATAAAGACCCAGAAGAGCTA------ACGTGC-AATGTA------TTTTCTAGTTCCAgggttggcaaactttctctct-aagggtgggatgataaacattttaggcttttcagaccaaga---ggcgacatcagag-ggtatgtaggt---------acaagagggaaaagttgcccccggaa-ttttttg--gataaaattcaaaa---ctttacttagggatgc---caaaatgtaaacttcatat
166 i canFam2.chr14 I 3 C 0
167 s dasNov1.scaffold_256527 987 414 + 1837 CTAAATCTCGCGGAGAAGGTGGAACA-GGTTACCCAAACCCGACCGAG-GAGGCGAGTTG---GAAACGGCGACTGGGACAAGCTCCCTCA---GAGACGGAGAGAGACCCCA-GTGGAAGGGGGGAGAGGCTCTTAGGGAAACGATGGGGGGACCCGCCCGCACCCGCACAGAGGCGCTGGCAGGCACAGCGGCCCCGAGGAGCCC------AGGAGC-AGGGC-TGTGT-TCCCCTGCATcaggggttggcaaactttttctgcaaagggccagatagtaaatattttaggctttgcaaaccaagaagtagaaagggaggcc-attatgtacgtatttatatagcaagagagaacattt---cccacaatttttttattgacagaatttaaaacttctttattgatgaacaccaaagaaacttgaatttcatat
168 i dasNov1.scaffold_256527 C 0 C 0
169 e monDom2.scaffold_22 30245538 51850 - 46578359 I
170 e echTel1.scaffold_309554 3896 34801 + 42008 I
171 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
172 e mm7.chr6 28991048 471 + 149646834 I
173 e bosTau2.chr4 19312883 12 - 69556449 I
174 e oryCun1.scaffold_213837 7852 41067 + 53501 I
175
176 a score=14948.000000
177 s hg17.chr7 127472681 34 + 158628139 aattttcccat---gagaactattcttcttttgtttt
178 s rheMac2.chr3 165789492 34 + 196418989 aattttcacat---aagaactattcttcttttgtttt
179 i rheMac2.chr3 C 0 C 0
180 s panTro1.chr6 129886562 34 + 161576975 aattttcccgt---gagaactattcttcttttgtttt
181 i panTro1.chr6 C 0 C 0
182 s canFam2.chr14 52849096 35 - 63938239 aatggtcatgt--ccataactattcttcttttatttt
183 i canFam2.chr14 C 0 C 0
184 s dasNov1.scaffold_256527 1401 32 + 1837 aattttcacatatcacgaagtatttttttttt-----
185 i dasNov1.scaffold_256527 C 0 n 0
186 e monDom2.scaffold_22 30245538 51850 - 46578359 I
187 e echTel1.scaffold_309554 3896 34801 + 42008 I
188 e loxAfr1.scaffold_2979 11430 3597 - 113413 I
189 e rn3.chr4 56184219 329 + 187371129 I
190 e mm7.chr6 28991048 471 + 149646834 I
191 e bosTau2.chr4 19312883 12 - 69556449 I
192 e oryCun1.scaffold_213837 7852 41067 + 53501 I
193