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comparison rnaseq/cutadapt/test-data/blat_wrapper_test1.out @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
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comparison
equal deleted inserted replaced
10:3378d12591ea 11:a712b378e090
1 30 0 0 0 0 0 0 0 + 0_0.666667 30 0 30 chr 4639675 4549207 4549237 1 30, 0, 4549207, cggacagcgccgccaccaacaaagccacca, cggacagcgccgccaccaacaaagccacca,
2 30 0 0 0 0 0 0 0 + 1_0.600000 30 0 30 chr 4639675 614777 614807 1 30, 0, 614777, aaaacaccggatgctccggcgctggcagat, aaaacaccggatgctccggcgctggcagat,
3 28 1 0 0 0 0 0 0 + 2_0.400000 30 0 29 chr 4639675 3289283 3289312 1 29, 0, 3289283, tttgcttttagtacaccggattcagaacc, tttgctttcagtacaccggattcagaacc,
4 30 0 0 0 0 0 0 0 + 4_0.766667 30 0 30 chr 4639675 2665584 2665614 1 30, 0, 2665584, cacgctacgtgcgcccccgcccagaaggcg, cacgctacgtgcgcccccgcccagaaggcg,
5 20 0 0 0 0 0 0 0 + 5_0.533333 30 4 24 chr 4639675 3375780 3375800 1 20, 4, 3375780, aaaacccgccgaagcgggtt, aaaacccgccgaagcgggtt,
6 30 0 0 0 0 0 0 0 + 6_0.533333 30 0 30 chr 4639675 965481 965511 1 30, 0, 965481, taagccgttactggcagcaagtgcaggcaa, taagccgttactggcagcaagtgcaggcaa,
7 30 0 0 0 0 0 0 0 + 7_0.400000 30 0 30 chr 4639675 1781311 1781341 1 30, 0, 1781311, tgaatttaccgttatctatcttgcctgcct, tgaatttaccgttatctatcttgcctgcct,
8 29 1 0 0 0 0 0 0 + 9_0.400000 30 0 30 chr 4639675 4400977 4401007 1 30, 0, 4400977, gcgttttgctaaacttctgccggaatataa, gcgctttgctaaacttctgccggaatataa,
9 30 0 0 0 0 0 0 0 + 11_0.533333 30 0 30 chr 4639675 3923551 3923581 1 30, 0, 3923551, caaaagcagagtctgttgacccatacgcgc, caaaagcagagtctgttgacccatacgcgc,
10 28 2 0 0 0 0 0 0 + 12_0.700000 30 0 30 chr 4639675 3304453 3304483 1 30, 0, 3304453, gcggacgatcttcacggtcgccacgcggac, gcggacgatcttcacggtcaccacgcgggc,
11 29 1 0 0 0 0 0 0 + 13_0.533333 30 0 30 chr 4639675 4555547 4555577 1 30, 0, 4555547, ttcttgttggatggcatactccggcagcca, ttcttgttggatggcgtactccggcagcca,
12 30 0 0 0 0 0 0 0 + 14_0.666667 30 0 30 chr 4639675 3811672 3811702 1 30, 0, 3811672, accccgatatcgtcgcaggcgttgccgcac, accccgatatcgtcgcaggcgttgccgcac,
13 29 1 0 0 0 0 0 0 + 16_0.566667 30 0 30 chr 4639675 1916143 1916173 1 30, 0, 1916143, atgtcctgatcgagcggcgttttaccgacc, atgtcctgatcgagcggcgttttaccgatc,
14 30 0 0 0 0 0 0 0 + 18_0.566667 30 0 30 chr 4639675 1860631 1860661 1 30, 0, 1860631, gtggtctcaagcccaaaggaagagtgaggc, gtggtctcaagcccaaaggaagagtgaggc,
15 30 0 0 0 0 0 0 0 + 19_0.566667 30 0 30 chr 4639675 1018466 1018496 1 30, 0, 1018466, gttgtaagcgtcagaaccgatgcggtcggt, gttgtaagcgtcagaaccgatgcggtcggt,
16 30 0 0 0 0 0 0 0 + 22_0.566667 30 0 30 chr 4639675 2006716 2006746 1 30, 0, 2006716, cggtattcctcagttctcgctgcatgcctg, cggtattcctcagttctcgctgcatgcctg,
17 30 0 0 0 0 0 0 0 - 23_0.600000 30 0 30 chr 4639675 4516584 4516614 1 30, 0, 4516584, cgctactgaaggcgtggtgcgtaacggcaa, cgctactgaaggcgtggtgcgtaacggcaa,
18 30 0 0 0 0 0 0 0 - 24_0.733333 30 0 30 chr 4639675 1535123 1535153 1 30, 0, 1535123, gaacagcagcagcgacgtggtgcgcccgcg, gaacagcagcagcgacgtggtgcgcccgcg,
19 30 0 0 0 0 0 0 0 + 27_0.600000 30 0 30 chr 4639675 3442475 3442505 1 30, 0, 3442475, ttaccgaggccagaaccgataccacgaccc, ttaccgaggccagaaccgataccacgaccc,
20 29 1 0 0 0 0 0 0 + 29_0.700000 30 0 30 chr 4639675 2807120 2807150 1 30, 0, 2807120, ctcgtccggcgggcggttttgccgacaagg, ctcgtccggcgggcggttttgccgataagg,
21 30 0 0 0 0 0 0 0 + 34_0.533333 30 0 30 chr 4639675 421739 421769 1 30, 0, 421739, tgatgttaaatgcatggcacctgccggtgc, tgatgttaaatgcatggcacctgccggtgc,
22 30 0 0 0 0 0 0 0 - 35_0.466667 30 0 30 chr 4639675 1334399 1334429 1 30, 0, 1334399, ggttaacctcgaatatctcggcaaagcagt, ggttaacctcgaatatctcggcaaagcagt,
23 30 0 0 0 0 0 0 0 + 36_0.433333 30 0 30 chr 4639675 2906502 2906532 1 30, 0, 2906502, tgttggcaacatggcgagcgtaatcaatta, tgttggcaacatggcgagcgtaatcaatta,
24 30 0 0 0 0 0 0 0 + 38_0.533333 30 0 30 chr 4639675 3438288 3438318 1 30, 0, 3438288, gcagcaggatcggatcgaactctggtttct, gcagcaggatcggatcgaactctggtttct,
25 29 1 0 0 0 0 0 0 + 39_0.400000 30 0 30 chr 4639675 2893756 2893786 1 30, 0, 2893756, taatgcggcattctcctgatttattgtcac, tattgcggcattctcctgatttattgtcac,
26 29 0 0 0 0 0 0 0 + 41_0.566667 30 1 30 chr 4639675 708504 708533 1 29, 1, 708504, gctgacggtcagcagggatacttcctgca, gctgacggtcagcagggatacttcctgca,
27 30 0 0 0 0 0 0 0 + 43_0.466667 30 0 30 chr 4639675 3483475 3483505 1 30, 0, 3483475, gctttttccagcatcaacgccactgaacaa, gctttttccagcatcaacgccactgaacaa,
28 30 0 0 0 0 0 0 0 + 44_0.433333 30 0 30 chr 4639675 4590702 4590732 1 30, 0, 4590702, aaagtggtagataacgtggtgcagactatg, aaagtggtagataacgtggtgcagactatg,
29 30 0 0 0 0 0 0 0 + 49_0.433333 30 0 30 chr 4639675 3341305 3341335 1 30, 0, 3341305, cgttatacggaacaacatttaactccagcg, cgttatacggaacaacatttaactccagcg,
30 28 2 0 0 0 0 0 0 + 50_0.466667 30 0 30 chr 4639675 2777224 2777254 1 30, 0, 2777224, ttgctgttgccatcgcttttcaggacatac, ttgctgttgccgtcacttttcaggacatac,
31 30 0 0 0 0 0 0 0 + 53_0.533333 30 0 30 chr 4639675 1768655 1768685 1 30, 0, 1768655, ccaggcactccgccatatttttgccatgac, ccaggcactccgccatatttttgccatgac,
32 30 0 0 0 0 0 0 0 + 54_0.400000 30 0 30 chr 4639675 2359543 2359573 1 30, 0, 2359543, gtattcttcattgatttgtaagcgggtacc, gtattcttcattgatttgtaagcgggtacc,
33 30 0 0 0 0 0 0 0 + 57_0.566667 30 0 30 chr 4639675 256715 256745 1 30, 0, 256715, cgcgaaatcctcgacgtccaggcacgtatt, cgcgaaatcctcgacgtccaggcacgtatt,
34 30 0 0 0 0 0 0 0 + 58_0.300000 30 0 30 chr 4639675 1108478 1108508 1 30, 0, 1108478, gttatccattaaaatagatcggatcgatat, gttatccattaaaatagatcggatcgatat,
35 30 0 0 0 0 0 0 0 + 60_0.533333 30 0 30 chr 4639675 1130738 1130768 1 30, 0, 1130738, aatctggcgaatgctgatagcgtgaccggt, aatctggcgaatgctgatagcgtgaccggt,
36 30 0 0 0 0 0 0 0 - 61_0.366667 30 0 30 chr 4639675 1578065 1578095 1 30, 0, 1578065, aaaaaacggctgacaaagctttcaaactga, aaaaaacggctgacaaagctttcaaactga,
37 30 0 0 0 0 0 0 0 + 63_0.566667 30 0 30 chr 4639675 3422447 3422477 1 30, 0, 3422447, tcacgctcgcagtcaagctggcttatgcca, tcacgctcgcagtcaagctggcttatgcca,
38 30 0 0 0 0 0 0 0 + 63_0.566667 30 0 30 chr 4639675 2724848 2724878 1 30, 0, 2724848, tcacgctcgcagtcaagctggcttatgcca, tcacgctcgcagtcaagctggcttatgcca,
39 30 0 0 0 0 0 0 0 - 63_0.566667 30 0 30 chr 4639675 4210393 4210423 1 30, 0, 4210393, tggcataagccagcttgactgcgagcgtga, tggcataagccagcttgactgcgagcgtga,
40 30 0 0 0 0 0 0 0 - 63_0.566667 30 0 30 chr 4639675 3944054 3944084 1 30, 0, 3944054, tggcataagccagcttgactgcgagcgtga, tggcataagccagcttgactgcgagcgtga,
41 29 1 0 0 0 0 0 0 + 64_0.500000 30 0 30 chr 4639675 4553565 4553595 1 30, 0, 4553565, gagatgacggttgcagagtcatgcgtttga, gagatgacggttgcagagtcatacgtttga,
42 30 0 0 0 0 0 0 0 + 65_0.533333 30 0 30 chr 4639675 3154209 3154239 1 30, 0, 3154209, tctggatcacgcgcaaacactggctatcgt, tctggatcacgcgcaaacactggctatcgt,
43 30 0 0 0 0 0 0 0 + 66_0.466667 30 0 30 chr 4639675 3330950 3330980 1 30, 0, 3330950, tctgctttagcaaacagagtgtggtcacga, tctgctttagcaaacagagtgtggtcacga,
44 30 0 0 0 0 0 0 0 + 68_0.566667 30 0 30 chr 4639675 699412 699442 1 30, 0, 699412, gaaggatagttggtcagcaacaccagcggc, gaaggatagttggtcagcaacaccagcggc,
45 30 0 0 0 0 0 0 0 + 69_0.733333 30 0 30 chr 4639675 3218070 3218100 1 30, 0, 3218070, ggcgcgctgtcggccacggcgaaatcgacc, ggcgcgctgtcggccacggcgaaatcgacc,
46 29 1 0 0 0 0 0 0 + 72_0.533333 30 0 30 chr 4639675 2811982 2812012 1 30, 0, 2811982, aactggaagggcttgggatgacacaacagc, aactggaagggcttgggatgacgcaacagc,
47 29 1 0 0 0 0 0 0 + 73_0.500000 30 0 30 chr 4639675 2480740 2480770 1 30, 0, 2480740, tttaagcgccaaccaggcttctttggttgc, tttaagcgccaaccaggcttctttagttgc,
48 30 0 0 0 0 0 0 0 + 74_0.433333 30 0 30 chr 4639675 1904984 1905014 1 30, 0, 1904984, acccttctttcgccatatcaaactgatgtc, acccttctttcgccatatcaaactgatgtc,
49 30 0 0 0 0 0 0 0 + 78_0.566667 30 0 30 chr 4639675 4535164 4535194 1 30, 0, 4535164, cggagtatccgttccccaacgacaagcatc, cggagtatccgttccccaacgacaagcatc,
50 30 0 0 0 0 0 0 0 + 79_0.500000 30 0 30 chr 4639675 3598974 3599004 1 30, 0, 3598974, aataccgggaagagacaacggggtctcttt, aataccgggaagagacaacggggtctcttt,
51 30 0 0 0 0 0 0 0 - 80_0.500000 30 0 30 chr 4639675 1333814 1333844 1 30, 0, 1333814, gagaatcagggcttcgcaaccctgtcatta, gagaatcagggcttcgcaaccctgtcatta,
52 30 0 0 0 0 0 0 0 + 82_0.500000 30 0 30 chr 4639675 962544 962574 1 30, 0, 962544, actgggttgctctgaacaagaaaggcgcta, actgggttgctctgaacaagaaaggcgcta,
53 30 0 0 0 0 0 0 0 + 83_0.533333 30 0 30 chr 4639675 4543338 4543368 1 30, 0, 4543338, cgccagggacgtatcgcgtcgatatctatt, cgccagggacgtatcgcgtcgatatctatt,
54 30 0 0 0 0 0 0 0 + 86_0.566667 30 0 30 chr 4639675 159366 159396 1 30, 0, 159366, ggcaacgcaggcgcatgattctgcttggaa, ggcaacgcaggcgcatgattctgcttggaa,
55 29 0 0 1 0 0 0 0 + 87_0.433333 30 0 30 chr 4639675 2137315 2137345 1 30, 0, 2137315, cgctggatgaaaancgtgaatatcacacca, cgctggatgaaaaacgtgaatatcacacca,
56 30 0 0 0 0 0 0 0 + 88_0.533333 30 0 30 chr 4639675 2263609 2263639 1 30, 0, 2263609, cgtaccgggctgaaagtagaagagcgtttc, cgtaccgggctgaaagtagaagagcgtttc,
57 30 0 0 0 0 0 0 0 + 90_0.466667 30 0 30 chr 4639675 609915 609945 1 30, 0, 609915, atcaccgtttcgctaaccggtacgtttaac, atcaccgtttcgctaaccggtacgtttaac,
58 29 1 0 0 0 0 0 0 + 91_0.566667 30 0 30 chr 4639675 2506977 2507007 1 30, 0, 2506977, ttcgcccggcaagcttacccaacgcttatc, ttcgcctggcaagcttacccaacgcttatc,
59 30 0 0 0 0 0 0 0 + 92_0.533333 30 0 30 chr 4639675 4109771 4109801 1 30, 0, 4109771, ttttccccgccgttagtagcgactgcagtt, ttttccccgccgttagtagcgactgcagtt,
60 30 0 0 0 0 0 0 0 + 93_0.400000 30 0 30 chr 4639675 2250545 2250575 1 30, 0, 2250545, ttatttgcccgatgagtcagtttattgcag, ttatttgcccgatgagtcagtttattgcag,
61 30 0 0 0 0 0 0 0 + 94_0.466667 30 0 30 chr 4639675 1274949 1274979 1 30, 0, 1274949, ccacggtgatatctggtgccatactgataa, ccacggtgatatctggtgccatactgataa,
62 30 0 0 0 0 0 0 0 + 95_0.466667 30 0 30 chr 4639675 3279675 3279705 1 30, 0, 3279675, tcccccgtaaggcctttctttttctttcgt, tcccccgtaaggcctttctttttctttcgt,
63 30 0 0 0 0 0 0 0 + 97_0.566667 30 0 30 chr 4639675 2779110 2779140 1 30, 0, 2779110, tgcgccgccggattgttgctcaacatgctt, tgcgccgccggattgttgctcaacatgctt,
64 30 0 0 0 0 0 0 0 + 98_0.366667 30 0 30 chr 4639675 3729759 3729789 1 30, 0, 3729759, aacgcgctaaccgccaataataacaaaatt, aacgcgctaaccgccaataataacaaaatt,