comparison rnaseq/cutadapt/test-data/fr.csfasta @ 11:a712b378e090

cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
parents
children
comparison
equal deleted inserted replaced
10:3378d12591ea 11:a712b378e090
1 # Sun Oct 4 18:40:32 2009 /share/apps/corona/bin/filter_fasta.pl --output=/data/results/solid176/solid176_20090923/Somali_Wild_Ass_a/results.01/primary.20091004212559515 --name=solid176_20090923_Somali_Wild_Ass_a --tag=F3 --minlength=50 --mincalls=25 --prefix=T /data/results/solid176/solid176_20090923/Somali_Wild_Ass_a/jobs/postPrimerSetPrimary.1062/rawseq
2 # Cwd: /state/partition1/home/pipeline
3 # Title: solid176_20090923_Somali_Wild_Ass_a
4 >853_7_53_F3
5 T..02.1120..22.2..230.22.3..033212.1.1....2221...12
6 >853_7_78_F3
7 T..13.2222..22.2..222.22.2..222212.2.2....2222...22
8 >853_7_88_F3
9 T..23.2221..13.2..033.30.1..010220.1.2....2222...22
10 >853_7_132_F3
11 T..22.2032..32.2..222.22.2..222222.2.2....2222...22
12 >853_7_141_F3
13 T..22.2112..10.2..221.02.1..220112.0.2....0222...22
14 >853_7_146_F3
15 T..12.1011..21.2..213.22.2..222222.2.2....2222...22
16 >853_7_269_F3
17 T..12.2222..22.2..222.22.2..222222.2.2....2222...22
18 >853_7_321_F3
19 T..20.2322..21.3..222.12.1..120012.3.0....2000...22
20 >853_7_386_F3
21 T..12.2302..20.2..231.12.0..200232.3.2....0002...22
22 >853_7_405_F3
23 T..21.0221..31.2..000.23.2..020022.0.2....0313...12
24 >853_7_411_F3
25 T..10.2000..33.2..022.02.0..200222.2.0....0000...00
26 >853_7_445_F3
27 T..30.3210..01.1..120.11.3..301222.1.2....3222...22
28 >853_7_469_F3
29 T..22.0102..20.3..200.21.0..002202.2.2....0203...02
30 >853_7_474_F3
31 T..30.1122..22.3..111.21.3..222020.2.2....2203...23
32 >853_7_497_F3
33 T..10.0200..22.1..112.03.0..100121.2.2....3132...21
34 >853_7_587_F3
35 T..22.2022..01.2..323.23.0..323322.1.1....2212...20
36 >853_7_630_F3
37 T..13.0022..11.1..213.10.0..031113.3.3....1112...20
38 >853_7_655_F3
39 T..01.0023..02.2..301.32.3..232113.2.2....2222...22
40 >853_7_692_F3
41 T..00.0122..02.3..230.21.2..301213.2.1....1122...22
42 >853_7_715_F3
43 T..00.0213..21.3..131.12.0..202011.1.0....0221...22
44 >853_7_719_F3
45 T..00.2231..02.0..122.13.0..003022.0.1....1010...02
46 >853_7_743_F3
47 T..11.0201..00.1..303.01.1..021332.3.3....3223...23
48 >853_7_791_F3
49 T..20.3311..03.2..301.01.2..122002.2.1....3123...21
50 >853_7_801_F3
51 T..00.0323..21.1..112.23.3..132022.2.1....2122...22
52 >853_7_845_F3
53 T..01.3303..01.1..102.03.1..222102.0.0....0231...12
54 >853_7_868_F3
55 T..31.3103..12.1..211.32.2..223200.2.3....1031...21
56 >853_7_1026_F3
57 T..22.3032..03.3..110.32.3..212230.3.0....1111...13
58 >853_7_1057_F3
59 T..30.3112..22.2..132.21.0..332122.2.2....2220...32
60 >853_7_1066_F3
61 T..01.1122..00.0..131.32.0..230030.3.3....2000...30
62 >853_7_1107_F3
63 T..20.0301..13.2..003.10.0..300221.2.1....3300...32
64 >853_7_1179_F3
65 T..02.3301..32.0..310.03.3..312300.3.3....1320...03
66 >853_7_1198_F3
67 T..32.2203..31.2..111.13.1..312322.2.2....1103...22
68 >853_7_1261_F3
69 T..20.3233..32.2..223.22.3..232033.2.3....0322...23
70 >853_7_1321_F3
71 T..00.0321..22.2..100.11.1..120210.0.2....2211...02
72 >853_7_1406_F3
73 T..13.0310..13.2..031.32.0..002230.0.2....0231...11
74 >853_7_1431_F3
75 T..11.0032..21.1..310.00.0..321021.0.2....3030...02
76 >853_7_1439_F3
77 T..20.0132..13.1..212.32.2..222110.3.0....2132...22
78 >853_7_1524_F3
79 T..20.1110..13.3..201.33.3..320121.1.3....3321...20
80 >853_7_1537_F3
81 T..12.1030..02.0..011.30.1..111200.0.3....2033...11
82 >853_7_1592_F3
83 T..21.3233..02.1..000.22.0..121233.3.1....3223...22
84 >853_7_1597_F3
85 T..12.3100..33.0..312.02.1..000000.3.1....1100...00
86 >853_7_1650_F3
87 T..00.2212..12.1..203.13.3..102012.0.2....3333...30
88 >853_7_1790_F3
89 T..23.1021..32.0..130.13.0..012301.0.1....0001...10
90 >853_7_1795_F3
91 T..22.2123..01.0..222.31.3..233211.0.1....2312...03
92 >853_7_1807_F3
93 T..03.0310..02.3..121.20.1..333122.3.1....0302...12
94 >853_7_1872_F3
95 T..01.2331..12.2..200.02.3..302232.3.1....1203...23
96 >853_7_1885_F3
97 T..10.3010..11.2..331.21.2..230213.1.3....0132...32
98 >853_7_1910_F3
99 T..11.1002..20.1..000.20.1..111022.2.0....3311...23
100 >853_8_43_F3
101 T..32100023203.2..110.31.120321022.100.1.11202..211
102 >853_8_48_F3
103 T..21122022323.1..222.32.020211202.222.2.20222..222
104 >853_8_57_F3
105 T..23231203232.2..212.22.222222232.222.2.22222..222
106 >853_8_106_F3
107 T..23112221210.3..001.02.032222322.212.2.22222..220
108 >853_8_196_F3
109 T..00233022111.0..002.20.021222222.020.0.22222..222
110 >853_8_211_F3
111 T..20112122111.2..112.22.220222212.122.0.21222..222
112 >853_8_227_F3
113 T..10201100320.2..302.10.312330220.312.2.02221..221
114 >853_8_248_F3
115 T..21312120022.0..122.22.222222232.222.2.23222..222
116 >853_8_253_F3
117 T..21322103032.2..222.22.222222222.222.2.22222..222
118 >853_8_342_F3
119 T..13021033322.2..301.32.230300120.122.0.02112..223
120 >853_8_400_F3
121 T..22033300003.2..212.31.222123211.122.0.22023..221
122 >853_8_422_F3
123 T..01111020122.2..201.22.120231110.221.2.22212..222
124 >853_8_555_F3
125 T..02332301011.0..112.00.033000312.302.3.13300..023
126 >853_8_638_F3
127 T..00113230133.1..100.22.131113302.011.1.20020..320
128 >853_8_735_F3
129 T..00011213121.3..001.11.003311000.222.0.22003..303
130 >853_8_888_F3
131 T..02110321212.0..222.12.220011220.032.1.02322..333
132 >853_8_893_F3
133 T..00112301113.2..023.21.002311320.100.3.21200..012
134 >853_8_898_F3
135 T..33330033033.3..022.31.223030333.212.1.01232..322
136 >853_8_920_F3
137 T..02321113231.0..302.30.010200220.321.0.01122..130
138 >853_8_958_F3
139 T..03321221220.3..021.12.001030231.030.3.21222..222
140 >853_8_1076_F3
141 T..22322100313.1..102.12.332320213.211.0.13003..112
142 >853_8_1081_F3
143 T..10030322221.2..000.20.002012320.222.2.21001..102
144 >853_8_1134_F3
145 T..33002312331.0..101.03.213221112.000.3.03233..123
146 >853_8_1157_F3
147 T..00333123321.1..100.11.112120200.230.0.21203..230
148 >853_8_1173_F3
149 T..30202112233.3..320.02.123012201.311.2.32000..122
150 >853_8_1215_F3
151 T..22310320211.2..131.10.232003230.102.2.11010..031
152 >853_8_1223_F3
153 T..10222220120.1..111.11.123301223.133.3.22333..111
154 >853_8_1229_F3
155 T..10011030332.0..200.31.312001011.220.1.11010..131
156 >853_8_1234_F3
157 T..33303001323.3..211.32.311201012.323.1.21333..221
158 >853_8_1255_F3
159 T..31322212222.0..003.20.121221012.212.2.03220..230
160 >853_8_1315_F3
161 T..32221201122.2..223.33.132223100.221.0.20222..232
162 >853_8_1372_F3
163 T..02101130220.1..113.23.121310222.233.3.12203..310
164 >853_8_1461_F3
165 T..00011120113.3..213.01.030001322.203.2.32222..222
166 >853_8_1475_F3
167 T..21310212220.3..100.02.122303121.002.3.12213..213
168 >853_8_1567_F3
169 T..02200001131.3..311.10.132232122.322.1.23023..002
170 >853_8_1662_F3
171 T..02221200121.2..022.10.310222220.231.2.12011..003
172 >853_8_1669_F3
173 T..23233312111.0..213.12.133322002.221.1.11110..113
174 >853_8_1758_F3
175 T..12201012113.2..001.10.100122000.000.2.00000..220
176 >853_8_1764_F3
177 T..11002002020.2..110.31.120112122.132.3.33003..102
178 >853_8_1824_F3
179 T..03311120021.1..310.13.320330301.220.3.30122..132
180 >853_8_1835_F3
181 T..21020321003.3..110.20.000022103.122.1.13220..033
182 >853_8_1917_F3
183 T..23111010120.2..232.32.121231102.101.1.21322..222
184 >853_8_1930_F3
185 T..31110222033.0..021.11.103010131.300.2.22212..311
186 >853_8_1938_F3
187 T..20302201110.2..211.22.132123322.120.1.31210..211
188 >853_8_1984_F3
189 T..13030120302.0..030.11.202121322.112.1.30000..212
190 >853_8_2005_F3
191 T..03113122102.2..101.20.002313003.110.1.01020..001
192 >853_8_2031_F3
193 T..22312022312.0..002.22.223022123.001.3.02200...00
194 >853_9_6_F3
195 T3222.021.1002.223202.22.222222122.222.2222.22.222.
196 >853_9_22_F3
197 T3212221120222.222223.22.222222222.222.2222222.2222
198 >853_9_70_F3
199 T1232131203111.331113.12.211213201.221.2221222.2222
200 >853_9_120_F3
201 T2030201011012.012222.33.100032000.130.2013202.1222
202 >853_9_156_F3
203 T3321020210022.132222.22.222222222.222.2222222.2222
204 >853_9_189_F3
205 T2220100322033.222211.00.111112003.313.0212203.2200
206 >853_9_243_F3
207 T3312311120013.312312.33.330022332.202.0202222.2222
208 >853_9_295_F3
209 T3322303220223.233321.20.002302222.122.2221222.2222
210 >853_9_299_F3
211 T2212302322021.122112.23.102311100.121.1012120.0220
212 >853_9_311_F3
213 T3002321221310.212333.32.202232132.222.0222221.2222
214 >853_9_326_F3
215 T2210200022032.010112.12.121321102.222.1332222.1222
216 >853_9_451_F3
217 T1313220202311.230012.31.313200122.100.2111321.2232
218 >853_9_485_F3
219 T1012221322221.213211.23.110010113.123.2132121.0222
220 >853_9_509_F3
221 T1112203021113.100101.20.031203011.213.2002211.1222
222 >853_9_538_F3
223 T2230021213312.123100.00.203202301.223.0112020.3322
224 >853_9_548_F3
225 T0132222011033.010321.23.303222223.222.2223322.3322
226 >853_9_574_F3
227 T0003331113101.303333.21.213311213.222.2321222.2222
228 >853_9_589_F3
229 T3020133021133.203200.02.030202120.123.0113212.0220
230 >853_9_595_F3
231 T2221011230111.231023.00.021011112.330.2130120.1203
232 >853_9_750_F3
233 T2201102121222.302002.22.221321132.332.2020223.2121
234 >853_9_783_F3
235 T2102221003120.330300.21.302010320.231.2133001.1202
236 >853_9_814_F3
237 T1200101012011.312003.00.330011010.220.0222213.3122
238 >853_9_924_F3
239 T3003021221101.202301.02.111120122.123.1010103.3110
240 >853_9_1019_F3
241 T2120212011102.211122.20.210120211.031.1301102.2021
242 >853_9_1046_F3
243 T0101121011013.012213.12.122113221.112.0101211.1223
244 >853_9_1126_F3
245 T3320221032332.112122.11.232123121.301.1210212.2222
246 >853_9_1192_F3
247 T3312212100322.301202.12.020132101.011.1011212.2232
248 >853_9_1243_F3
249 T2212213200232.121320.01.323212013.200.0130313.3233
250 >853_9_1272_F3
251 T3113210021031.002131.03.130002013.110.2003310.3011
252 >853_9_1339_F3
253 T2101230022200.310112.01.133031320.201.3331311.2012
254 >853_9_1358_F3
255 T3320111221222.120310.11.230202223.122.0122200.0201
256 >853_9_1364_F3
257 T0102331230200.010010.13.233311001.233.1100312.1222
258 >853_9_1397_F3
259 T2312020122101.033322.03.022121000.011.0131220.1130
260 >853_9_1425_F3
261 T1132332020203.323331.10.133320202.311.3222311.3330
262 >853_9_1446_F3
263 T1332212000022.212222.13.021232232.213.1001302.0300
264 >853_9_1479_F3
265 T3031333311130.333221.02.122333123.032.2211110.2332
266 >853_9_1503_F3
267 T2231320200020.131311.11.232031120.231.0013222.2222
268 >853_9_1512_F3
269 T2333032222302.121133.20.001231203.233.3020000.0200
270 >853_9_1530_F3
271 T3213220202302.221131.03.120222222.020.1131133.1313
272 >853_9_1559_F3
273 T1110111121111.113211.01.310210020.112.1113102.0321
274 >853_9_1601_F3
275 T3232030011033.203002.00.123300322.113.0010121.0331
276 >853_9_1636_F3
277 T0010012303222.120103.33.330322222.122.3113033.3001
278 >853_9_1657_F3
279 T1123103213301.312223.03.133301112.222.1213233.1233
280 >853_9_1675_F3
281 T3313013311000.313233.11.112203113.120.2211112.1313
282 >853_9_1709_F3
283 T3011001101311.031010.11.000033010.030.2032000.2000
284 >853_9_1722_F3
285 T0021012221000.222012.20.202211312.020.3331130.3113
286 >853_9_1728_F3
287 T3322221032321.211112.31.012301302.333.0301101.3103
288 >853_9_1739_F3
289 T2010003210112.011000.31.320103212.122.2132333.2222
290 >853_9_1870_F3
291 T2212303303300.202201.02.333103031.332.0322203.2223
292 >853_9_1923_F3
293 T0300322132333.221111.02.233001011.000.1122132.2131
294 >853_9_1943_F3
295 T0122230112231.013112.01.202313211.020.2202120.1120
296 >853_9_1970_F3
297 T1320210131121.331212.13.233310233.031.1111331.3020
298 >853_9_2024_F3
299 T3011020132232.011002.01.230121230.022.2320210.1220
300 >853_10_26_F3
301 T3300222111210.212222.22.220222212.222.2221122.2322
302 >853_10_63_F3
303 T0011121023110.100223.13.210101231.103.2222222.2222
304 >853_10_221_F3
305 T2223312323322.102231.00.202132012.221.2322202.2222
306 >853_10_254_F3
307 T2011202101022.222222.20.202222222.122.2222222.2222
308 >853_10_285_F3
309 T1000220221200.132200.01.232221210.032.2101130.1132
310 >853_10_317_F3
311 T0020230210321.031322.31.032332100.200.2212002.2022
312 >853_10_329_F3
313 T2010200322033.310112.12.011220102.222.1332221.1222
314 >853_10_349_F3
315 T3031031031312.133031.31.220312113.213.3222320.1212
316 >853_10_354_F3
317 T1320122002030.212221.12.232210122.222.2222222.2222
318 >853_10_370_F3
319 T2322231103221.011031.13.231332301.312.0232122.1233
320 >853_10_464_F3
321 T3330010000212.300131.13.112322331.023.0331120.2221
322 >853_10_491_F3
323 T3223302200011.023222.32.031020232.233.3211222.2222
324 >853_10_512_F3
325 T1210222121121.222302.02.321102023.201.0332212.1212
326 >853_10_517_F3
327 T0000201333120.213001.30.020133111.031.1111133.1133
328 >853_10_560_F3
329 T3230002002001.210031.11.103301002.122.1220320.2123
330 >853_10_604_F3
331 T1032122022103.222321.22.012232132.321.1010201.0302
332 >853_10_659_F3
333 T1201100030102.223301.21.332202113.022.2221012.0011
334 >853_10_684_F3
335 T1330201102202.321002.10.333002110.222.0221111.1000
336 >853_10_703_F3
337 T1022030001113.000331.01.111001102.001.2102023.1120
338 >853_10_707_F3
339 T1223030002221.033223.00.023213111.032.0333020.2200
340 >853_10_728_F3
341 T2213112011111.130322.02.321122031.002.1110333.2202
342 >853_10_761_F3
343 T3302220103103.220211.11.111230232.012.2022220.0222
344 >853_10_875_F3
345 T1313213021302.023221.30.130212021.222.0213121.3212
346 >853_10_914_F3
347 T3110012323223.012101.21.100223330.121.2211222.3322
348 >853_10_955_F3
349 T3332010100311.122131.30.220001131.301.2221110.0231
350 >853_10_966_F3
351 T3000010112221.310121.01.010103222.210.2222222.2122
352 >853_10_971_F3
353 T3300220331100.110110.23.321023321.330.0101321.2221
354 >853_10_982_F3
355 T1223223121032.232303.23.022302133.233.3332013.2332
356 >853_10_990_F3
357 T2021031201033.133023.11.213012011.102.2221322.0123
358 >853_10_1038_F3
359 T0110022322300.202330.22.230120310.313.3121231.2300
360 >853_10_1097_F3
361 T1301300302122.001100.21.032120300.322.2222102.2000
362 >853_10_1144_F3
363 T3000003202132.300013.00.120002011.121.2021010.2012
364 >853_10_1153_F3
365 T1112233202031.033032.20.313112310.232.0001211.1101
366 >853_10_1219_F3
367 T0220020211300.110223.13.032102023.003.3212322.2120
368 >853_10_1415_F3
369 T3310131131130.303220.33.131331311.111.2133111.3111
370 >853_10_1466_F3
371 T2122033302111.121230.02.303030131.101.1301001.0023
372 >853_10_1684_F3
373 T1101100223023.110012.22.110331022.303.3211320.1223
374 >853_10_1774_F3
375 T3003300312003.222212.22.001103322.002.3232312.0101
376 >853_10_1797_F3
377 T0103231100311.103321.01.112002201.000.0202000.3120
378 >853_10_1964_F3
379 T3230330222203.033201.21.111313022.322.0133330.0333
380 >853_10_2037_F3
381 T.00001.02..11.32..0..12.1210111.0.000..01.003.2..0
382 >853_11_36_F3
383 T3022220202000.222222322.2123223222222.2222222.2222
384 >853_11_179_F3
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626 >853_13_1042_F3
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652 >853_13_1606_F3
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654 >853_13_1626_F3
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658 >853_13_1784_F3
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872 >853_15_1548_F3
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1000 >853_16_2037_F3
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