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comparison rnaseq/cutadapt/test-data/mutation_data1_interactive.svg @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
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10:3378d12591ea 11:a712b378e090
1 <?xml version="1.0" standalone="no"?>
2 <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
3
4 <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1">
5 <script type="text/javascript">
6 /**
7 * SVGPan library 1.2
8 * ====================
9 *
10 * Given an unique existing element with id "viewport", including the
11 * the library into any SVG adds the following capabilities:
12 *
13 * - Mouse panning
14 * - Mouse zooming (using the wheel)
15 * - Object dargging
16 *
17 * Known issues:
18 *
19 * - Zooming (while panning) on Safari has still some issues
20 *
21 * Releases:
22 *
23 * 1.2, Sat Mar 20 08:42:50 GMT 2010, Zeng Xiaohui
24 * Fixed a bug with browser mouse handler interaction
25 *
26 * 1.1, Wed Feb 3 17:39:33 GMT 2010, Zeng Xiaohui
27 * Updated the zoom code to support the mouse wheel on Safari/Chrome
28 *
29 * 1.0, Andrea Leofreddi
30 * First release
31 *
32 * This code is licensed under the following BSD license:
33 *
34 * Copyright 2009-2010 Andrea Leofreddi (a.leofreddi@itcharm.com). All rights reserved.
35 *
36 * Redistribution and use in source and binary forms, with or without modification, are
37 * permitted provided that the following conditions are met:
38 *
39 * 1. Redistributions of source code must retain the above copyright notice, this list of
40 * conditions and the following disclaimer.
41 *
42 * 2. Redistributions in binary form must reproduce the above copyright notice, this list
43 * of conditions and the following disclaimer in the documentation and/or other materials
44 * provided with the distribution.
45 *
46 * THIS SOFTWARE IS PROVIDED BY Andrea Leofreddi ``AS IS'' AND ANY EXPRESS OR IMPLIED
47 * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
48 * FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL Andrea Leofreddi OR
49 * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
50 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
51 * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
52 * ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
53 * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
54 * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 *
56 * The views and conclusions contained in the software and documentation are those of the
57 * authors and should not be interpreted as representing official policies, either expressed
58 * or implied, of Andrea Leofreddi.
59 */
60
61 var root = document.documentElement;
62
63 var state = 'none', stateTarget, stateOrigin, stateTf;
64
65 setupHandlers(root);
66
67 /**
68 * Register handlers
69 */
70 function setupHandlers(root){
71 setAttributes(root, {
72 "onmouseup" : "add(evt)",
73 "onmousedown" : "handleMouseDown(evt)",
74 "onmousemove" : "handleMouseMove(evt)",
75 "onmouseup" : "handleMouseUp(evt)",
76 //"onmouseout" : "handleMouseUp(evt)", // Decomment this to stop the pan functionality when dragging out of the SVG element
77 });
78
79 if(navigator.userAgent.toLowerCase().indexOf('webkit') >= 0)
80 window.addEventListener('mousewheel', handleMouseWheel, false); // Chrome/Safari
81 else
82 window.addEventListener('DOMMouseScroll', handleMouseWheel, false); // Others
83 }
84
85 /**
86 * Instance an SVGPoint object with given event coordinates.
87 */
88 function getEventPoint(evt) {
89 var p = root.createSVGPoint();
90
91 p.x = evt.clientX;
92 p.y = evt.clientY;
93
94 return p;
95 }
96
97 /**
98 * Sets the current transform matrix of an element.
99 */
100 function setCTM(element, matrix) {
101 var s = "matrix(" + matrix.a + "," + matrix.b + "," + matrix.c + "," + matrix.d + "," + matrix.e + "," + matrix.f + ")";
102
103 element.setAttribute("transform", s);
104 }
105
106 /**
107 * Dumps a matrix to a string (useful for debug).
108 */
109 function dumpMatrix(matrix) {
110 var s = "[ " + matrix.a + ", " + matrix.c + ", " + matrix.e + "\n " + matrix.b + ", " + matrix.d + ", " + matrix.f + "\n 0, 0, 1 ]";
111
112 return s;
113 }
114
115 /**
116 * Sets attributes of an element.
117 */
118 function setAttributes(element, attributes){
119 for (i in attributes)
120 element.setAttributeNS(null, i, attributes[i]);
121 }
122
123 /**
124 * Handle mouse move event.
125 */
126 function handleMouseWheel(evt) {
127 if(evt.preventDefault)
128 evt.preventDefault();
129
130 evt.returnValue = false;
131
132 var svgDoc = evt.target.ownerDocument;
133
134 var delta;
135
136 if(evt.wheelDelta)
137 delta = evt.wheelDelta / 3600; // Chrome/Safari
138 else
139 delta = evt.detail / -90; // Mozilla
140
141 var z = 1 + delta; // Zoom factor: 0.9/1.1
142
143 var g = svgDoc.getElementById("viewport");
144
145 var p = getEventPoint(evt);
146
147 p = p.matrixTransform(g.getCTM().inverse());
148
149 // Compute new scale matrix in current mouse position
150 var k = root.createSVGMatrix().translate(p.x, p.y).scale(z).translate(-p.x, -p.y);
151
152 setCTM(g, g.getCTM().multiply(k));
153
154 stateTf = stateTf.multiply(k.inverse());
155 }
156
157 /**
158 * Handle mouse move event.
159 */
160 function handleMouseMove(evt) {
161 if(evt.preventDefault)
162 evt.preventDefault();
163
164 evt.returnValue = false;
165
166 var svgDoc = evt.target.ownerDocument;
167
168 var g = svgDoc.getElementById("viewport");
169
170 if(state == 'pan') {
171 // Pan mode
172 var p = getEventPoint(evt).matrixTransform(stateTf);
173
174 setCTM(g, stateTf.inverse().translate(p.x - stateOrigin.x, p.y - stateOrigin.y));
175 } else if(state == 'move') {
176 // Move mode
177 var p = getEventPoint(evt).matrixTransform(g.getCTM().inverse());
178
179 setCTM(stateTarget, root.createSVGMatrix().translate(p.x - stateOrigin.x, p.y - stateOrigin.y).multiply(g.getCTM().inverse()).multiply(stateTarget.getCTM()));
180
181 stateOrigin = p;
182 }
183 }
184
185 /**
186 * Handle click event.
187 */
188 function handleMouseDown(evt) {
189 if(evt.preventDefault)
190 evt.preventDefault();
191
192 evt.returnValue = false;
193
194 var svgDoc = evt.target.ownerDocument;
195
196 var g = svgDoc.getElementById("viewport");
197
198 if(evt.target.tagName == "svg") {
199 // Pan mode
200 state = 'pan';
201
202 stateTf = g.getCTM().inverse();
203
204 stateOrigin = getEventPoint(evt).matrixTransform(stateTf);
205 }
206 /*else {
207 // Move mode
208 state = 'move';
209
210 stateTarget = evt.target;
211
212 stateTf = g.getCTM().inverse();
213
214 stateOrigin = getEventPoint(evt).matrixTransform(stateTf);
215 }*/
216 }
217 /**
218 * Handle mouse button release event.
219 */
220 function handleMouseUp(evt) {
221 if(evt.preventDefault)
222 evt.preventDefault();
223
224 evt.returnValue = false;
225
226 var svgDoc = evt.target.ownerDocument;
227
228 if(state == 'pan' || state == 'move') {
229 // Quit pan mode
230 state = '';
231 }
232 }
233 </script>
234
235 <g id="viewport">
236
237 <text y="3" x="12" stroke="none" fill="black"><tspan style="font-family:Verdana;font-size:20%">A</tspan></text>
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243 <rect fill-opacity="0.5" height="3" width="4" stroke="none" y="0" x="24" fill="green" />
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245 <text y="3" x="32" stroke="none" fill="black"><tspan style="font-family:Verdana;font-size:20%">G</tspan></text>
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252
253 <text y="35" x="23" stroke="none" transform="rotate(-90 23,35)" fill="black"><tspan style="font-family:Verdana;font-size:25%">s1</tspan></text>
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