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comparison gbk2rdf/gbktordf.xml @ 3:db04e12b8779

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author jjkoehorst
date Sat, 21 Feb 2015 07:28:39 -0500
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children 47d1b27466ee
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2:89be6bd55b4c 3:db04e12b8779
1 <tool id="SAPP_genbank_to_ttl" name="EMBL/GBK to RDF" version="0.1">
2 <requirements>
3 <requirement type='package' version="3.4">python</requirement>
4 <requirement type='package' version="1.0">rdflib</requirement>
5 </requirements>
6 <description>Genbank to RDF conversion</description>
7 <command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command>
8 <inputs>
9 <param name="input" type="data" format="gbk,gb,genbank" label="Genbank file"/>
10 <param name="format" type="select" label="EMBL/GBK">
11 <option value="genbank" selected="true"> Genbank</option>
12 <option value="embl"> EMBL </option>
13 </param>
14 </inputs>
15
16 <outputs>
17 <data format="rdf" name="output" label="GBKttl: ${input.name}" />
18 </outputs>
19
20 <tests>
21 <test>
22 <param name="input" value="test-data/NC_010067.gbk"/>
23 <output name="$output" file="NC_010067.rdf"/>
24 <output name="$format" value="genbank"/>
25 <output name="$sourcedb" value="genbank"/>
26 </test>
27 </tests>
28
29 <help>
30 Genbank or EMBL to RDF conversion
31 </help>
32 </tool>