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comparison ipath.xml @ 35:fa736576c7ed draft

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planemo upload commit 16d0bc526ad02361a7c13231d4c50479c42d8d0f-dirty
author jjkoehorst
date Mon, 04 Jul 2016 10:37:59 -0400
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34:f2cbf1230026 35:fa736576c7ed
1 <tool id="DIPath" name="iPath" version="2.01">
2 <description>iPath Generator</description>
3 <requirements>
4 <container type="docker">jjkoehorst/sappdocker:IPATH</container>
5 </requirements>
6 <command interpreter="docker">java -jar /ipath/iPath-0.0.1-SNAPSHOT-jar-with-dependencies.jar
7 #if $conditional.source_select==&quot;single&quot;
8 -group1 '$conditional.input'
9 #else
10 -group1 $conditional.input1
11 -group2 $conditional.input2
12 #end if
13 -o &quot;$outfile&quot; -format TURTLE
14 </command>
15 <inputs>
16 <param label="Priam E-Value cutoff" name="Evalue" optional="False" size="60" type="float" value="1E-1"/>
17 <conditional name="conditional">
18 <param label="Analysis method" name="source_select" type="select">
19 <option value="single">Single genome</option>
20 <option value="group">Group comparison</option>
21 </param>
22 <when value="single">
23 <param format="ttl" label="RDF Genome file" name="input" type="data"/>
24 </when>
25 <when value="group">
26 <param format="rdf" label="RDF Genome file for group 1" multiple="True" name="input1" type="data"/>
27 <param format="rdf" label="RDF Genome file for group 2" multiple="True" name="input2" type="data"/>
28 </when>
29 </conditional>
30 </inputs>
31 <outputs>
32 <data format="tsv" label="iPath comparison" name="outfile"/>
33 </outputs>
34 <help>GROUP 1: #FF0000
35 GROUP 2: #0000FF
36 BOTH: #00FF00
37
38 </help>
39 </tool>