--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sappDocker/signalp.xml	Wed Jun 29 01:36:58 2016 -0400
@@ -0,0 +1,59 @@
+<tool id="DSignalp" name="Signal peptide detection" version="1.0.0">
+	<description/>
+	<requirements>
+		<container type="docker">jjkoehorst/sappdocker:SIGNALP</container>
+	</requirements>
+	<command interpreter="docker">java -jar /signalp/target/signalp-0.0.1-SNAPSHOT-jar-with-dependencies.jar
+		'-signaltype' '$runtype' -input $input -output $output -format TURTLE
+	</command>
+	<inputs>
+		<param format="ttl" label="ttl genome file" name="input" type="data"/>
+		<param label="Gram+/- or Eukaryotes" name="runtype" type="select">
+			<option value="gram+">Gram+ Bacteria</option>
+			<option value="gram-">Gram- Bacteria</option>
+			<option value="euk">Eukaryotes</option>
+		</param>
+	</inputs>
+	<outputs>
+		<data format="ttl" label="signalP: ${input.name}" name="output"/>
+	</outputs>
+	<help>Be aware that this can only be used for academic users; other
+		users are
+		requested to contact CBS Software Package Manager at
+		software@cbs.dtu.dk.
+		We are investigating alternative prediction
+		applications, please contact
+		us if you are aware of such method.
+	</help>
+	<citations>
+		<citation type="bibtex">@article{Petersen2011,
+			author = {Petersen,
+			Thomas Nordahl and Brunak, S\o ren and von Heijne,
+			Gunnar and Nielsen,
+			Henrik},
+			doi = {10.1038/nmeth.1701},
+			issn = {1548-7105},
+			journal =
+			{Nature methods},
+			keywords = {Algorithms,Cell Membrane,Cell Membrane:
+			metabolism,Computational
+			Biology,Protein Sorting Signals,Software},
+			mendeley-groups = {Dump/VAPP Paper},
+			month = jan,
+			number = {10},
+			pages =
+			{785--6},
+			pmid = {21959131},
+			publisher = {Nature Publishing Group},
+			title = {{SignalP 4.0: discriminating signal peptides from
+			transmembrane
+			regions.}},
+			url =
+			{http://www.ncbi.nlm.nih.gov/pubmed/21959131},
+			volume = {8},
+			year =
+			{2011}
+			}
+		</citation>
+	</citations>
+</tool>
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