--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/1.sam	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,29 @@
+@QNAME	FLAG	RNAME	POS	MAPQ	CIGAR	MRNM	MPOS	ISIZE	SEQ	QUAL	OPT
+1378_11_329	69	*	0	0	*	*	0	0	AGACCGGGCGGGGTGGCGTTCGGT	%##+'#######%###$#$##$(#
+1378_11_329	133	*	0	0	*	*	0	0	GTTCGTGGCCGGTGGGTGTTTGGG	###$$#$#$&#####$'$#$###$
+1378_17_1788	69	*	0	0	*	*	0	0	TGCCGTGTCTTGCTAACGCCGATT	#'#$$#$###%%##$$$$######
+1378_17_1788	133	*	0	0	*	*	0	0	TGGGTGGATGTGTTGTCGTTCATG	#$#$###$#$#######$#$####
+1378_25_2035	69	*	0	0	*	*	0	0	CTGCGTGTTGGTGTCTACTGGGGT	#%#'##$#$##&%#%$$$%#%#'#
+1378_25_2035	133	*	0	0	*	*	0	0	GTGCGTCGGGGAGGGTGCTGTCGG	######%#$%#$$###($###&&%
+1378_28_770	89	chr11.nib:1-134452384	72131356	37	17M1I5M	=	72131356	0	CACACTGTGACAGACAGCGCAGC	00/02!!0//1200210!!44/1	XT:A:U	CM:i:2	SM:i:37	AM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:1	XG:i:1	MD:Z:22
+1378_28_770	181	chr11.nib:1-134452384	72131356	0	24M	=	72131356	0	TTGGTGCGCGCGGTTGAGGGTTGG	$$(#%%#$%#%####$%%##$###
+1378_33_1945	113	chr2.nib:1-242951149	181247988	0	23M	chr12.nib:1-132349534	41710908	0	GAGAGAGAGAGAGAGAGAGAGAG	PQRVUMNXYRPUXYXWXSOSZ]M	XT:A:R	CM:i:0	SM:i:0	AM:i:0	X0:i:163148	XM:i:0	XO:i:0	XG:i:0	MD:Z:23
+1378_33_1945	177	chr12.nib:1-132349534	41710908	0	23M	chr2.nib:1-242951149	181247988	0	AGAGAGAGAGAGAGAGAGAGAGA	SQQWZYURVYWX]]YXTSY]]ZM	XT:A:R	CM:i:0	SM:i:0	AM:i:0	X0:i:163148	XM:i:0	XO:i:0	XG:i:0	MD:Z:23
+1378_34_789	69	*	0	0	*	*	0	0	ATGGTGGCTGACGCGTTTGACTGT	#$##%#$##$&$#%##$##$###$
+1378_34_789	133	*	0	0	*	*	0	0	GGGCTTGCGTTAGTGAGAGGTTGT	###%$%$%%###$####$###$#&
+1378_35_263	115	chr16.nib:1-88827254	19671878	0	23M	=	19671877	-1	AGAGAGAGAGAGAGAGAGAGTCT	77543:<55#"4!&=964518A>	XT:A:R	CM:i:2	SM:i:0	AM:i:0	X0:i:4	X1:i:137	XM:i:2	XO:i:0	XG:i:0	MD:Z:23
+1378_35_263	179	chr16.nib:1-88827254	19671877	0	23M	=	19671878	1	GAGAGAGAGAGAGAGAGAGAGTC	LE7402DD34FL:27AKE>;432	XT:A:R	CM:i:0	SM:i:0	AM:i:0	X0:i:265	XM:i:0	XO:i:0	XG:i:0	MD:Z:23
+1378_43_186	69	*	0	0	*	*	0	0	ATACTAGTTGGGACGCGTTGTGCT	#$(4%$########$#$###$$$#
+1378_43_186	133	*	0	0	*	*	0	0	GCTAGGGTTTGGGTTTGCGGTGGG	$%#$########%##%#$###'#'
+1378_51_1671	117	chr2.nib:1-242951149	190342418	0	24M	=	190342418	0	CTGGCGTTCTCGGCGTGGATGGGT	#####$$##$#%#%%###%$#$##
+1378_51_1671	153	chr2.nib:1-242951149	190342418	37	16M1I6M	=	190342418	0	TCTAACTTAGCCTCATAATAGCT	/<<!"0///////00/!!0121/	XT:A:U	CM:i:2	SM:i:37	AM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:1	XG:i:1	MD:Z:22
+1378_56_324	117	chr2.nib:1-242951149	80324999	0	24M	=	80324999	0	TCCAGTCGCGTTGTTAGGTTCGGA	#$#$$$#####%##%%###**#+/
+1378_56_324	153	chr2.nib:1-242951149	80324999	37	8M1I14M	=	80324999	0	TTTAGCCCGAAATGCCTAGAGCA	4;6//11!"11100110////00	XT:A:U	CM:i:2	SM:i:37	AM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:1	XG:i:1	MD:Z:22
+1378_56_773	69	*	0	0	*	*	0	0	TGTCGTGAGGTCACTTATCCCCAT	&%#%##%%#####&#$%##$%##$
+1378_56_773	133	*	0	0	*	*	0	0	TCTGGTCGGTTTCGGGGAGTGGAA	##%%#&$###$#$##%$####%%$
+1378_62_2027	69	*	0	0	*	*	0	0	CTTCCACGATCTGCTCGCTGTGGT	(#&&$##$$#$%#%$$$#$###'#
+1378_62_2027	133	*	0	0	*	*	0	0	GTTGGCCTGGCCTGCCGTGCTGCG	*##),/%##$)#%##1$#'%.#&#
+1378_62_2029	69	*	0	0	*	*	0	0	TCTGGGCTGTCTTCGGGTCGGTGT	$%$$####$##$$#)##%%#$###
+1378_62_2029	133	*	0	0	*	*	0	0	GGCGGTGTGTGGTGCGGCTGTGCG	/$$$=(####%####)$$%$-&%#
+1378_67_1795	81	chr16.nib:1-88827254	26739130	0	23M	chrY.nib:1-57772954	57401793	0	TGGCATTCCTGTAGGCAGAGAGG	AZWWZS]!"QNXZ]VQ]]]/2]]	XT:A:R	CM:i:2	SM:i:0	AM:i:0	X0:i:3	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:23
+1378_67_1795	161	chrY.nib:1-57772954	57401793	37	23M	chr16.nib:1-88827254	26739130	0	GATCACCCAGGTGATGTAACTCC	]WV]]]]WW]]]]]]]]]]PU]]	XT:A:U	CM:i:0	SM:i:37	AM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:23
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