--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/5_mult_liftover_mapped.bed	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,132 @@
+chr7	116197893	116197920	CCDS5763.1_cds_0_0_chr7_115444713_f	1	+
+chr7	116222929	116223015	CCDS5763.1_cds_1_0_chr7_115468539_f	1	+
+chr7	116237938	116238188	CCDS5763.1_cds_2_0_chr7_115483025_f	1	+
+chr7	116239076	116239412	CCDS5763.1_cds_3_0_chr7_115484166_f	1	+
+chr7	116240675	116240891	CCDS5763.1_cds_4_0_chr7_115485765_f	1	+
+chr7	116241233	116241396	CCDS5763.1_cds_5_0_chr7_115486323_f	1	+
+chr7	116246193	116246382	CCDS5763.1_cds_6_0_chr7_115491299_f	1	+
+chr7	116222929	116223015	CCDS5764.1_cds_0_0_chr7_115468539_f	1	+
+chr7	116237938	116238188	CCDS5764.1_cds_1_0_chr7_115483025_f	1	+
+chr7	116239076	116239412	CCDS5764.1_cds_2_0_chr7_115484166_f	1	+
+chr7	116240675	116240891	CCDS5764.1_cds_3_0_chr7_115485765_f	1	+
+chr7	116241233	116241396	CCDS5764.1_cds_4_0_chr7_115486323_f	1	+
+chr7	116246193	116246382	CCDS5764.1_cds_5_0_chr7_115491299_f	1	+
+chr7	116495075	116495225	CCDS5766.1_cds_0_0_chr7_115733787_f	1	+
+chr7	116495546	116495734	CCDS5766.1_cds_1_0_chr7_115734265_f	1	+
+chr7	116501260	116501411	CCDS5766.1_cds_2_0_chr7_115739976_f	1	+
+chr7	116495075	116495225	CCDS5765.1_cds_0_0_chr7_115733787_f	1	+
+chr7	116501260	116501449	CCDS5765.1_cds_1_0_chr7_115739976_f	1	+
+chr7	116522088	116522118	CCDS5767.1_cds_0_0_chr7_115759068_f	1	+
+chr7	116523550	116523715	CCDS5767.1_cds_1_0_chr7_115760530_f	1	+
+chr7	116562770	116563112	CCDS5767.1_cds_2_0_chr7_115792951_f	1	+
+chr7	116872904	116872943	CCDS5768.1_cds_0_0_chr7_116096617_f	1	+
+chr7	116899050	116899114	CCDS5768.1_cds_1_0_chr7_116122132_f	1	+
+chr7	116903933	116903985	CCDS5768.1_cds_2_0_chr7_116126999_f	1	+
+chr7	116909709	116909773	CCDS5768.1_cds_3_0_chr7_116132777_f	1	+
+chr7	116915110	116915317	CCDS5768.1_cds_4_0_chr7_116138182_f	1	+
+chr7	116917198	116917278	CCDS5768.1_cds_5_0_chr7_116140268_f	1	+
+chr7	116921242	116921321	CCDS5768.1_cds_6_0_chr7_116144238_f	1	+
+chr7	116923078	116923150	CCDS5768.1_cds_7_0_chr7_116146074_f	1	+
+chr7	116927214	116927277	CCDS5768.1_cds_8_0_chr7_116150065_f	1	+
+chr7	116928880	116929021	CCDS5768.1_cds_9_0_chr7_116151732_f	1	+
+chr7	116964784	116964932	CCDS5770.1_cds_0_0_chr7_116187546_f	1	+
+chr7	117108894	117108977	CCDS5770.1_cds_1_0_chr7_116333767_f	1	+
+chr7	117128694	117128854	CCDS5770.1_cds_2_0_chr7_116353566_f	1	+
+chr7	117138899	117138954	CCDS5770.1_cds_3_0_chr7_116363798_f	1	+
+chr7	117139597	117139713	CCDS5770.1_cds_4_0_chr7_116364496_f	1	+
+chr7	117140988	117141064	CCDS5770.1_cds_5_0_chr7_116365890_f	1	+
+chr7	117143259	117143328	CCDS5770.1_cds_6_0_chr7_116368129_f	1	+
+chr7	117145226	117145381	CCDS5770.1_cds_7_0_chr7_116370086_f	1	+
+chr7	117147574	117147672	CCDS5770.1_cds_8_0_chr7_116372440_f	1	+
+chr7_random	2679423	2679538	CCDS5770.1_cds_9_0_chr7_116404867_f	1	+
+chr7	117201671	117201751	CCDS5770.1_cds_10_0_chr7_116423326_f	1	+
+chr7	117203227	117203330	CCDS5770.1_cds_11_0_chr7_116424839_f	1	+
+chr7	117222109	117222260	CCDS5770.1_cds_12_0_chr7_116443792_f	1	+
+chr7	117231432	117231525	CCDS5770.1_cds_13_0_chr7_116453089_f	1	+
+chr7	117234203	117234343	CCDS5770.1_cds_14_0_chr7_116455928_f	1	+
+chr7	117235141	117235261	CCDS5770.1_cds_15_0_chr7_116456866_f	1	+
+chr7	116964784	116964932	CCDS5769.1_cds_0_0_chr7_116187546_f	1	+
+chr7	117108894	117108977	CCDS5769.1_cds_1_0_chr7_116333767_f	1	+
+chr7	117128694	117128854	CCDS5769.1_cds_2_0_chr7_116353566_f	1	+
+chr7	117138899	117138954	CCDS5769.1_cds_3_0_chr7_116363798_f	1	+
+chr7	117139597	117139713	CCDS5769.1_cds_4_0_chr7_116364496_f	1	+
+chr7	117140988	117141064	CCDS5769.1_cds_5_0_chr7_116365890_f	1	+
+chr7	117145226	117145381	CCDS5769.1_cds_6_0_chr7_116370086_f	1	+
+chr7	117147574	117147672	CCDS5769.1_cds_7_0_chr7_116372440_f	1	+
+chr7_random	2679423	2679538	CCDS5769.1_cds_8_0_chr7_116404867_f	1	+
+chr7	117201671	117201751	CCDS5769.1_cds_9_0_chr7_116423326_f	1	+
+chr7	117203227	117203330	CCDS5769.1_cds_10_0_chr7_116424839_f	1	+
+chr7	117222109	117222260	CCDS5769.1_cds_11_0_chr7_116443792_f	1	+
+chr7	117231432	117231525	CCDS5769.1_cds_12_0_chr7_116453089_f	1	+
+chr7	117234203	117234343	CCDS5769.1_cds_13_0_chr7_116455928_f	1	+
+chr7	117241962	117242058	CCDS5769.1_cds_14_0_chr7_116463767_f	1	+
+chr7	117291331	117291561	CCDS5771.1_cds_0_0_chr7_116512160_r	1	-
+chr7	117310742	117311007	CCDS5771.1_cds_1_0_chr7_116531617_r	1	-
+chr7	117328536	117328629	CCDS5771.1_cds_2_0_chr7_116549076_r	1	-
+chr7	117333743	117333970	CCDS5771.1_cds_3_0_chr7_116554572_r	1	-
+chr7	117336084	117336167	CCDS5771.1_cds_4_0_chr7_116556912_r	1	-
+chr7	117382797	117382950	CCDS5772.1_cds_0_0_chr7_116597601_r	1	-
+chr7	117386552	117386666	CCDS5772.1_cds_1_0_chr7_116601357_r	1	-
+chr7	117387812	117387919	CCDS5772.1_cds_2_0_chr7_116602617_r	1	-
+chr7	117397672	117397782	CCDS5772.1_cds_3_0_chr7_116613943_r	1	-
+chr7	117398745	117398802	CCDS5772.1_cds_4_0_chr7_116615016_r	1	-
+chr7	117399808	117399884	CCDS5772.1_cds_5_0_chr7_116616074_r	1	-
+chr7	117400724	117400849	CCDS5772.1_cds_6_0_chr7_116616991_r	1	-
+chr7	117402466	117402602	CCDS5772.1_cds_7_0_chr7_116618731_r	1	-
+chr7	117403442	117403554	CCDS5772.1_cds_8_0_chr7_116619703_r	1	-
+chr7	117438281	117438393	CCDS5772.1_cds_9_0_chr7_116654168_r	1	-
+chr7	117440357	117440480	CCDS5772.1_cds_10_0_chr7_116656242_r	1	-
+chr7	117444948	117445048	CCDS5772.1_cds_11_0_chr7_116660841_r	1	-
+chr7	117445468	117445573	CCDS5772.1_cds_12_0_chr7_116661361_r	1	-
+chr7	117499706	117499759	CCDS5773.1_cds_0_0_chr7_116714100_f	1	+
+chr7	117523820	117523931	CCDS5773.1_cds_1_0_chr7_116738258_f	1	+
+chr7	117528597	117528706	CCDS5773.1_cds_2_0_chr7_116743039_f	1	+
+chr7	117550464	117550680	CCDS5773.1_cds_3_0_chr7_116764904_f	1	+
+chr7	117553829	117553919	CCDS5773.1_cds_4_0_chr7_116768281_f	1	+
+chr7	117554806	117554970	CCDS5773.1_cds_5_0_chr7_116769253_f	1	+
+chr7	117556111	117556237	CCDS5773.1_cds_6_0_chr7_116770553_f	1	+
+chr7	117559659	117559905	CCDS5773.1_cds_7_0_chr7_116774105_f	1	+
+chr7	117561568	117561660	CCDS5773.1_cds_8_0_chr7_116776021_f	1	+
+chr7	117568199	117568382	CCDS5773.1_cds_9_0_chr7_116782646_f	1	+
+chr7	117579005	117579197	CCDS5773.1_cds_10_0_chr7_116793469_f	1	+
+chr7	117609945	117610041	CCDS5773.1_cds_11_0_chr7_116821744_f	1	+
+chr7	117612558	117612645	CCDS5773.1_cds_12_0_chr7_116824358_f	1	+
+chr7	117614292	117615016	CCDS5773.1_cds_13_0_chr7_116825939_f	1	+
+chr7	117617279	117617408	CCDS5773.1_cds_14_0_chr7_116828935_f	1	+
+chr7	117625173	117625211	CCDS5773.1_cds_15_0_chr7_116836831_f	1	+
+chr7	117625879	117626130	CCDS5773.1_cds_16_0_chr7_116837537_f	1	+
+chr7	117628986	117629066	CCDS5773.1_cds_17_0_chr7_116840679_f	1	+
+chr7	117632825	117632976	CCDS5773.1_cds_18_0_chr7_116844524_f	1	+
+chr7	117633887	117634115	CCDS5773.1_cds_19_0_chr7_116845586_f	1	+
+chr7	117636923	117637024	CCDS5773.1_cds_20_0_chr7_116848618_f	1	+
+chr7	117649505	117649753	CCDS5773.1_cds_21_0_chr7_116861527_f	1	+
+chr7	117664146	117664302	CCDS5773.1_cds_22_0_chr7_116876443_f	1	+
+chr7	117674548	117674638	CCDS5773.1_cds_23_0_chr7_116886847_f	1	+
+chr7	117686685	117686858	CCDS5773.1_cds_24_0_chr7_116898693_f	1	+
+chr7	117687456	117687562	CCDS5773.1_cds_25_0_chr7_116899464_f	1	+
+chr7	117688902	117689103	CCDS5773.1_cds_26_0_chr7_116900913_f	1	+
+chr7	117734744	117734996	CCDS5774.1_cds_0_0_chr7_116945542_r	1	-
+chr7	117741224	117741326	CCDS5774.1_cds_1_0_chr7_116952023_r	1	-
+chr7	117743450	117743638	CCDS5774.1_cds_4_0_chr7_116958552_r	1	-
+chr7	117743957	117744164	CCDS5774.1_cds_5_0_chr7_116959057_r	1	-
+chr7	117746996	117747175	CCDS5774.1_cds_6_0_chr7_116962094_r	1	-
+chr7	117753794	117753981	CCDS5774.1_cds_7_0_chr7_116968918_r	1	-
+chr7	117754149	117754302	CCDS5774.1_cds_8_0_chr7_116969274_r	1	-
+chr7	117764699	117764799	CCDS5774.1_cds_9_0_chr7_116979836_r	1	-
+chr7	117764881	117764968	CCDS5774.1_cds_10_0_chr7_116980018_r	1	-
+chr7	117775103	117775183	CCDS5774.1_cds_11_0_chr7_116990560_r	1	-
+chr7	117776423	117776519	CCDS5774.1_cds_12_0_chr7_116991880_r	1	-
+chr7	117779436	117779712	CCDS5774.1_cds_13_0_chr7_116994440_r	1	-
+chr7	117786062	117786180	CCDS5774.1_cds_14_0_chr7_117001064_r	1	-
+chr7	117796458	117796713	CCDS5774.1_cds_15_0_chr7_117011516_r	1	-
+chr7	117799369	117799520	CCDS5774.1_cds_16_0_chr7_117014446_r	1	-
+chr7	117801790	117801890	CCDS5774.1_cds_17_0_chr7_117016867_r	1	-
+chr7	117803186	117803390	CCDS5774.1_cds_18_0_chr7_117018256_r	1	-
+chr7	117810065	117811719	CCDS5774.1_cds_19_0_chr7_117025133_r	1	-
+chr7	117829639	117829865	CCDS5774.1_cds_20_0_chr7_117044770_r	1	-
+chr7	117880732	117880840	CCDS5774.1_cds_21_0_chr7_117095214_r	1	-
+chr7	117893163	117893244	CCDS5774.1_cds_22_0_chr7_117107340_r	1	-
+chr5	133682646	133682808	CCDS4149.1_cds_0_0_chr5_131424299_f	1	+
+chr5	133682906	133682948	CCDS4149.1_cds_1_0_chr5_131424559_f	1	+
+chr5	133684249	133684339	CCDS4149.1_cds_2_0_chr5_131425904_f	1	+
+chr5	133684463	133684505	CCDS4149.1_cds_3_0_chr5_131426118_f	1	+