--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/DNAseHSS.dat	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,1927 @@
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+chr22	35155974	35156753	chr22.904	536
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+chr22	35248441	35250370	chr22.915	714
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+chr22	36353930	36354797	chr22.1023	528
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+chr22	37056732	37057024	chr22.1085	409
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+chr22	37174627	37175493	chr22.1094	490
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+chr22	37224753	37224954	chr22.1100	431
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+chr22	37252037	37252881	chr22.1108	569
+chr22	37290157	37291981	chr22.1109	869
+chr22	37292685	37293012	chr22.1111	437
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+chr22	37420972	37422398	chr22.1115	626
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+chr22	37471812	37472695	chr22.1121	629
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+chr22	37478971	37479571	chr22.1125	528
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+chr22	37591607	37591707	chr22.1138	390
+chr22	37591862	37591907	chr22.1139	341
+chr22	37592007	37593667	chr22.1140	967
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+chr22	37693860	37694500	chr22.1142	492
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+chr22	37796949	37798089	chr22.1151	569
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+chr22	37837762	37838956	chr22.1153	526
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+chr22	37872733	37874274	chr22.1158	865
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+chr22	37961396	37963122	chr22.1167	772
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+chr22	38003532	38003642	chr22.1173	345
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+chr22	38070751	38070930	chr22.1185	367
+chr22	38072400	38072540	chr22.1186	368
+chr22	38108915	38109360	chr22.1187	410
+chr22	38119931	38120825	chr22.1188	753
+chr22	38132918	38133403	chr22.1189	561
+chr22	38177655	38177748	chr22.1191	434
+chr22	38177805	38178715	chr22.1192	500
+chr22	38179344	38179392	chr22.1193	362
+chr22	38210595	38211200	chr22.1194	688
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+chr22	38214247	38214298	chr22.1196	389
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+chr22	38232166	38232905	chr22.1199	446
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+chr22	38239608	38241877	chr22.1203	817
+chr22	38241992	38242092	chr22.1204	376
+chr22	38249513	38250521	chr22.1205	636
+chr22	38252534	38253867	chr22.1206	851
+chr22	38255097	38255104	chr22.1207	326
+chr22	38255146	38255588	chr22.1208	477
+chr22	38255784	38255796	chr22.1209	385
+chr22	38265995	38267121	chr22.1210	609
+chr22	38277953	38278289	chr22.1211	400
+chr22	38278325	38278352	chr22.1212	479
+chr22	38287688	38288378	chr22.1213	555
+chr22	38318260	38319261	chr22.1214	607
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+chr22	38338056	38338243	chr22.1216	376
+chr22	38343630	38343794	chr22.1217	452
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+chr22	38369774	38369795	chr22.1219	357
+chr22	38376131	38376165	chr22.1220	385
+chr22	38376845	38377030	chr22.1221	378
+chr22	38378599	38379502	chr22.1222	829
+chr22	38380445	38380475	chr22.1223	400
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+chr22	38382037	38382049	chr22.1225	327
+chr22	38382470	38383224	chr22.1226	680
+chr22	38383429	38383616	chr22.1227	364
+chr22	38383769	38384009	chr22.1228	436
+chr22	38384982	38385357	chr22.1229	420
+chr22	38385409	38385509	chr22.1230	378
+chr22	38406613	38406681	chr22.1231	403
+chr22	38411782	38411848	chr22.1232	405
+chr22	38457946	38458146	chr22.1233	368
+chr22	38471160	38471760	chr22.1234	459
+chr22	38494485	38494695	chr22.1235	397
+chr22	38498744	38499451	chr22.1237	437
+chr22	38549129	38549229	chr22.1238	388
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+chr22	38619280	38619420	chr22.1241	352
+chr22	38620604	38622176	chr22.1242	589
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+chr22	38628573	38629113	chr22.1244	461
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+chr22	38637547	38637747	chr22.1246	373
+chr22	38638547	38639247	chr22.1247	485
+chr22	38641043	38641781	chr22.1248	467
+chr22	38641842	38642022	chr22.1249	364
+chr22	38646618	38647712	chr22.1250	536
+chr22	38648112	38648412	chr22.1251	386
+chr22	38651748	38652946	chr22.1252	527
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+chr22	38657388	38658128	chr22.1254	516
+chr22	38658260	38659000	chr22.1255	571
+chr22	38660988	38661728	chr22.1256	507
+chr22	38664983	38666083	chr22.1257	491
+chr22	38671903	38672543	chr22.1258	521
+chr22	38672765	38673345	chr22.1259	501
+chr22	38673600	38673621	chr22.1260	309
+chr22	38679357	38680457	chr22.1261	517
+chr22	38680657	38680757	chr22.1262	335
+chr22	38681866	38682506	chr22.1263	491
+chr22	38700730	38701270	chr22.1264	406
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+chr22	38714491	38716000	chr22.1266	718
+chr22	38716318	38716658	chr22.1267	360
+chr22	38730119	38730959	chr22.1268	614
+chr22	38736012	38736492	chr22.1269	435
+chr22	38740633	38740849	chr22.1270	338
+chr22	38744735	38745662	chr22.1271	592
+chr22	38764178	38764418	chr22.1272	435
+chr22	38764446	38766547	chr22.1273	788
+chr22	38771953	38772001	chr22.1274	344
+chr22	38775855	38777035	chr22.1275	583
+chr22	38814859	38815499	chr22.1276	512
+chr22	38827867	38829051	chr22.1277	482
+chr22	38836437	38836977	chr22.1278	466
+chr22	38837052	38837900	chr22.1279	556
+chr22	38837963	38838051	chr22.1280	350
+chr22	38897427	38900404	chr22.1281	629
+chr22	38903252	38903492	chr22.1282	379
+chr22	38903574	38903671	chr22.1283	341
+chr22	38903690	38903830	chr22.1284	421
+chr22	38914451	38915396	chr22.1285	487
+chr22	38923451	38924651	chr22.1286	635
+chr22	38936708	38936923	chr22.1287	395
+chr22	38937415	38937855	chr22.1288	428
+chr22	38937873	38938253	chr22.1289	439
+chr22	38938571	38938848	chr22.1290	453
+chr22	38939066	38939646	chr22.1291	501
+chr22	38939712	38940092	chr22.1292	438
+chr22	38940751	38941362	chr22.1293	382
+chr22	38942925	38943165	chr22.1294	382
+chr22	38961428	38962209	chr22.1295	516
+chr22	38964507	38964640	chr22.1296	349
+chr22	38968531	38969711	chr22.1297	509
+chr22	38969723	38970363	chr22.1298	531
+chr22	38978680	38979720	chr22.1299	590
+chr22	38996786	38997526	chr22.1300	503
+chr22	39007747	39007987	chr22.1301	411
+chr22	39008087	39008587	chr22.1302	483
+chr22	39010367	39011387	chr22.1303	513
+chr22	39016394	39016874	chr22.1304	434
+chr22	39029594	39029794	chr22.1305	415
+chr22	39044209	39046027	chr22.1306	624
+chr22	39047379	39048379	chr22.1307	456
+chr22	39052349	39053449	chr22.1308	538
+chr22	39054015	39054136	chr22.1309	347
+chr22	39054436	39054536	chr22.1310	388
+chr22	39054960	39056070	chr22.1311	568
+chr22	39056371	39056771	chr22.1312	445
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+chr22	39056971	39057211	chr22.1314	362
+chr22	39063317	39063457	chr22.1315	357
+chr22	39066368	39066648	chr22.1316	500
+chr22	39066711	39067591	chr22.1317	612
+chr22	39067666	39068894	chr22.1318	519
+chr22	39090299	39090539	chr22.1319	453
+chr22	39090814	39092194	chr22.1320	654
+chr22	39096689	39096721	chr22.1321	320
+chr22	39105658	39106377	chr22.1322	535
+chr22	39108100	39108940	chr22.1323	526
+chr22	39116399	39116779	chr22.1324	397
+chr22	39120264	39120904	chr22.1325	504
+chr22	39121186	39121326	chr22.1326	387
+chr22	39121526	39121766	chr22.1327	423
+chr22	39121984	39122930	chr22.1328	593
+chr22	39136406	39136568	chr22.1330	379
+chr22	39156733	39157873	chr22.1331	557
+chr22	39171645	39172456	chr22.1332	538
+chr22	39172962	39173102	chr22.1333	389
+chr22	39173265	39173605	chr22.1334	432
+chr22	39182623	39184579	chr22.1335	593
+chr22	39207065	39207205	chr22.1336	394
+chr22	39207575	39208881	chr22.1337	591
+chr22	39212936	39213172	chr22.1338	368
+chr22	39239260	39239540	chr22.1339	483
+chr22	39239564	39240509	chr22.1340	573
+chr22	39252067	39253046	chr22.1341	486
+chr22	39253637	39255007	chr22.1342	724
+chr22	39255219	39255348	chr22.1343	365
+chr22	39284444	39284584	chr22.1344	400
+chr22	39290357	39290597	chr22.1345	367
+chr22	39353464	39353652	chr22.1346	388
+chr22	39356091	39356231	chr22.1347	400
+chr22	39356324	39358771	chr22.1348	814
+chr22	39366235	39366415	chr22.1349	446
+chr22	39366449	39367029	chr22.1350	524
+chr22	39372174	39372856	chr22.1351	521
+chr22	39375043	39375093	chr22.1352	348
+chr22	39403312	39404024	chr22.1353	591
+chr22	39432122	39432702	chr22.1354	443
+chr22	39441432	39442212	chr22.1355	495
+chr22	39447132	39447346	chr22.1356	430
+chr22	39447621	39448301	chr22.1357	465
+chr22	39449310	39449567	chr22.1358	385
+chr22	39452059	39452350	chr22.1359	422
+chr22	39452884	39453680	chr22.1360	595
+chr22	39471543	39472124	chr22.1361	401
+chr22	39485020	39485520	chr22.1362	529
+chr22	39485582	39485862	chr22.1363	448
+chr22	39500937	39501261	chr22.1364	408
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+chr22	39574859	39575259	chr22.1369	404
+chr22	39575359	39575459	chr22.1370	321
+chr22	39576398	39578592	chr22.1371	748
+chr22	39602051	39602151	chr22.1372	369
+chr22	39602551	39602651	chr22.1373	335
+chr22	39619520	39619535	chr22.1375	318
+chr22	39619603	39619983	chr22.1376	480
+chr22	39643232	39643510	chr22.1377	443
+chr22	39670923	39672808	chr22.1378	803
+chr22	39742180	39743581	chr22.1379	703
+chr22	39743641	39743921	chr22.1380	429
+chr22	39810974	39815468	chr22.1381	898
+chr22	39823728	39823828	chr22.1382	356
+chr22	39842146	39842541	chr22.1383	400
+chr22	39842546	39842686	chr22.1384	363
+chr22	39859042	39859482	chr22.1385	409
+chr22	39898706	39899206	chr22.1386	389
+chr22	39917384	39918971	chr22.1387	694
+chr22	39925280	39926260	chr22.1388	770
+chr22	39937913	39938753	chr22.1389	562
+chr22	39957770	39958863	chr22.1390	752
+chr22	39959792	39959865	chr22.1391	383
+chr22	40005610	40007690	chr22.1392	818
+chr22	40021399	40023387	chr22.1393	801
+chr22	40046653	40047193	chr22.1394	394
+chr22	40101340	40103379	chr22.1395	866
+chr22	40124273	40124878	chr22.1396	582
+chr22	40128117	40128135	chr22.1397	341
+chr22	40132970	40133046	chr22.1398	347
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+chr22	40133164	40133686	chr22.1400	457
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+chr22	40166304	40169674	chr22.1404	705
+chr22	40188653	40190953	chr22.1405	722
+chr22	40245046	40245146	chr22.1406	350
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+chr22	40247046	40247746	chr22.1408	522
+chr22	40253833	40253966	chr22.1409	367
+chr22	40264331	40265495	chr22.1410	777
+chr22	40280140	40280298	chr22.1411	362
+chr22	40309422	40309466	chr22.1412	327
+chr22	40309522	40310924	chr22.1413	910
+chr22	40324729	40324770	chr22.1414	391
+chr22	40340757	40343039	chr22.1415	825
+chr22	40387073	40387819	chr22.1416	695
+chr22	40387926	40388306	chr22.1417	461
+chr22	40402467	40403207	chr22.1418	556
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+chr22	40417410	40418177	chr22.1421	581
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+chr22	40450330	40450570	chr22.1423	383
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+chr22	40501413	40502366	chr22.1428	719
+chr22	40519941	40521964	chr22.1429	769
+chr22	40522005	40522185	chr22.1430	381
+chr22	40543223	40543577	chr22.1431	420
+chr22	40550700	40551189	chr22.1432	391
+chr22	40552664	40552844	chr22.1433	402
+chr22	40552907	40554809	chr22.1434	892
+chr22	40554848	40555409	chr22.1435	446
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+chr22	40559284	40559606	chr22.1437	390
+chr22	40563711	40563768	chr22.1438	326
+chr22	40564680	40565180	chr22.1439	425
+chr22	40577632	40579004	chr22.1440	614
+chr22	40582371	40583651	chr22.1441	607
+chr22	40585517	40585997	chr22.1442	437
+chr22	40593663	40594503	chr22.1443	522
+chr22	40627272	40628072	chr22.1444	472
+chr22	40628564	40632163	chr22.1445	611
+chr22	40634742	40635982	chr22.1446	711
+chr22	40638758	40638856	chr22.1447	373
+chr22	40639730	40640669	chr22.1448	517
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+chr22	40660417	40661019	chr22.1450	751
+chr22	40661217	40662312	chr22.1451	561
+chr22	40666414	40667877	chr22.1452	661
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+chr22	40681179	40681659	chr22.1454	470
+chr22	40687350	40687430	chr22.1455	452
+chr22	40696790	40697832	chr22.1456	689
+chr22	40718446	40719743	chr22.1457	707
+chr22	40742806	40743378	chr22.1458	442
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+chr22	40766347	40766447	chr22.1461	354
+chr22	40790587	40791936	chr22.1462	708
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+chr22	40839149	40839289	chr22.1467	351
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+chr22	40889497	40889505	chr22.1471	316
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+chr22	40938437	40938577	chr22.1479	353
+chr22	40949728	40949828	chr22.1480	336
+chr22	40956644	40957224	chr22.1481	431
+chr22	40983352	40983492	chr22.1483	414
+chr22	40983639	40983898	chr22.1484	416
+chr22	40989526	40991563	chr22.1485	833
+chr22	41003829	41004542	chr22.1486	566
+chr22	41006666	41007266	chr22.1487	494
+chr22	41007294	41007534	chr22.1488	371
+chr22	41011545	41011725	chr22.1489	373
+chr22	41012149	41012349	chr22.1491	390
+chr22	41014444	41015175	chr22.1492	552
+chr22	41015803	41015922	chr22.1493	431
+chr22	41017032	41017307	chr22.1494	356
+chr22	41019554	41021055	chr22.1495	583
+chr22	41021227	41021705	chr22.1496	432
+chr22	41034505	41035127	chr22.1497	527
+chr22	41035189	41035729	chr22.1498	526
+chr22	41037517	41037997	chr22.1499	447
+chr22	41045534	41046300	chr22.1500	494
+chr22	41062558	41062652	chr22.1501	366
+chr22	41062658	41063150	chr22.1502	462
+chr22	41063497	41063716	chr22.1503	461
+chr22	41063772	41064818	chr22.1504	680
+chr22	41088593	41090419	chr22.1506	749
+chr22	41108813	41109453	chr22.1507	509
+chr22	41157881	41158721	chr22.1508	609
+chr22	41163958	41165523	chr22.1509	680
+chr22	41194141	41194330	chr22.1510	398
+chr22	41216272	41216427	chr22.1511	343
+chr22	41220461	41221588	chr22.1512	819
+chr22	41239848	41240839	chr22.1513	657
+chr22	41253871	41254101	chr22.1514	426
+chr22	41273931	41274670	chr22.1515	608
+chr22	41302056	41303009	chr22.1516	657
+chr22	41324718	41324858	chr22.1517	397
+chr22	41324947	41325327	chr22.1518	463
+chr22	41334424	41336517	chr22.1519	756
+chr22	41341482	41341722	chr22.1520	439
+chr22	41341819	41342499	chr22.1521	558
+chr22	41343198	41343298	chr22.1522	376
+chr22	41349756	41349813	chr22.1523	373
+chr22	41369106	41370592	chr22.1524	848
+chr22	41382381	41383384	chr22.1525	623
+chr22	41409471	41409743	chr22.1526	404
+chr22	41441125	41441329	chr22.1527	353
+chr22	41441363	41441380	chr22.1528	364
+chr22	41500662	41501031	chr22.1529	456
+chr22	41554378	41554634	chr22.1530	402
+chr22	41554904	41555034	chr22.1531	381
+chr22	41576501	41578202	chr22.1532	808
+chr22	41588169	41588632	chr22.1533	556
+chr22	41615719	41616319	chr22.1534	406
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+chr22	41667746	41668046	chr22.1536	370
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+chr22	41733970	41736599	chr22.1539	838
+chr22	41745503	41745634	chr22.1540	395
+chr22	41764769	41765349	chr22.1541	426
+chr22	41809081	41810303	chr22.1542	811
+chr22	41830746	41832674	chr22.1544	591
+chr22	41838686	41839386	chr22.1545	445
+chr22	41863243	41864272	chr22.1546	730
+chr22	41871480	41871512	chr22.1547	445
+chr22	41871518	41873396	chr22.1548	668
+chr22	41874455	41874805	chr22.1549	395
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+chr22	41907027	41908820	chr22.1551	820
+chr22	41951379	41952396	chr22.1552	646
+chr22	41983656	41984917	chr22.1553	623
+chr22	41994488	41994634	chr22.1554	365
+chr22	41994691	41994785	chr22.1555	445
+chr22	42001459	42001859	chr22.1556	406
+chr22	42063580	42063593	chr22.1557	345
+chr22	42063599	42064537	chr22.1558	468
+chr22	42066805	42067330	chr22.1559	494
+chr22	42106105	42106712	chr22.1560	530
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+chr22	42109830	42109933	chr22.1563	405
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+chr22	48930809	48932759	chr22.1911	707
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+chr22	49258252	49260636	chr22.1949	646
+chr22	49267773	49268606	chr22.1950	627
+chr22	49272646	49274495	chr22.1951	644
+chr22	49275790	49275818	chr22.1952	327
+chr22	49276675	49277826	chr22.1953	745
+chr22	49289917	49290017	chr22.1954	385
+chr22	49291185	49292251	chr22.1955	687
+chr22	49292350	49292490	chr22.1956	394
+chr22	49302144	49302344	chr22.1957	361
+chr22	49310578	49312317	chr22.1958	845
+chr22	49328526	49329577	chr22.1959	611
+chr22	49339237	49339737	chr22.1960	443
+chr22	49348359	49348839	chr22.1961	499
+chr22	49349012	49350493	chr22.1962	594
+chr22	49350929	49350946	chr22.1963	344
+chr22	49356120	49357265	chr22.1964	702
+chr22	49399918	49400118	chr22.1965	419
+chr22	49401218	49403850	chr22.1966	576
+chr22	49406600	49406830	chr22.1967	354
+chr22	49430891	49431185	chr22.1968	432
+chr22	49450962	49451762	chr22.1969	484
+chr22	49456871	49456955	chr22.1970	337
+chr22	49460431	49461357	chr22.1971	599
+chr22	49485746	49485837	chr22.1972	346
+chr22	49506364	49506904	chr22.1973	382
+chr22	49511756	49512736	chr22.1974	606