--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/blat_wrapper_test1.fa	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,200 @@
+>0_0.666667
+CGGACAGCGCCGCCACCAACAAAGCCACCA
+>1_0.600000
+AAAACACCGGATGCTCCGGCGCTGGCAGAT
+>2_0.400000
+TTTGCTTTTAGTACACCGGATTCAGAACCA
+>3_0.566667
+CCGTCCCCATGAATACACCTTTCTGGACGG
+>4_0.766667
+CACGCTACGTGCGCCCCCGCCCAGAAGGCG
+>5_0.533333
+AAACAAAACCCGCCGAAGCGGGTTAAGTGC
+>6_0.533333
+TAAGCCGTTACTGGCAGCAAGTGCAGGCAA
+>7_0.400000
+TGAATTTACCGTTATCTATCTTGCCTGCCT
+>8_0.500000
+TTAGCGGGAATAAAACAGGCTGTCAGCCAG
+>9_0.400000
+GCGTTTTGCTAAACTTCTGCCGGAATATAA
+>10_0.500000
+AAAGAGGCGAGCAGAGTAAAACGCAGGCAA
+>11_0.533333
+CAAAAGCAGAGTCTGTTGACCCATACGCGC
+>12_0.700000
+GCGGACGATCTTCACGGTCGCCACGCGGAC
+>13_0.533333
+TTCTTGTTGGATGGCATACTCCGGCAGCCA
+>14_0.666667
+ACCCCGATATCGTCGCAGGCGTTGCCGCAC
+>15_0.666667
+GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC
+>16_0.566667
+ATGTCCTGATCGAGCGGCGTTTTACCGACC
+>17_0.533333
+GGTGTTGAGTGTCCAGGTAATACGCTCTCG
+>18_0.566667
+GTGGTCTCAAGCCCAAAGGAAGAGTGAGGC
+>19_0.566667
+GTTGTAAGCGTCAGAACCGATGCGGTCGGT
+>20_0.566667
+CGACATCCTGTAGGCTGGCTTCAATGCGAC
+>21_0.733333
+GGGAAGGCTGACGGGCGTCCACACCACGGC
+>22_0.566667
+CGGTATTCCTCAGTTCTCGCTGCATGCCTG
+>23_0.600000
+TTGCCGTTACGCACCACGCCTTCAGTAGCG
+>24_0.733333
+CGCGGGCGCACCACGTCGCTGCTGCTGTTC
+>25_0.266667
+TTTTGGGAAAACTAAATACGCATCAAAAAT
+>26_0.566667
+CAACGAGGCGCTACCGAGTTGTTCAATGCG
+>27_0.600000
+TTACCGAGGCCAGAACCGATACCACGACCC
+>28_0.666667
+CGCTCAATCTGCTCGCGCCTGGCTGGCGTT
+>29_0.700000
+CTCGTCCGGCGGGCGGTTTTGCCGACAAGG
+>30_0.233333
+GGAAATTGTACAATAGAAAAATTACTGTAT
+>31_0.533333
+GTGCTGAACTGTTCCACGACCATGGAGATG
+>32_0.600000
+TGAGGATGGTCCTCTGACTCTGCAGGCGCA
+>33_0.300000
+TAGTAACCCTTTAATAAGATTGTCGATTAG
+>34_0.533333
+TGATGTTAAATGCATGGCACCTGCCGGTGC
+>35_0.466667
+ACTGCTTTGCCGAGATATTCGAGGTTAACC
+>36_0.433333
+TGTTGGCAACATGGCGAGCGTAATCAATTA
+>37_0.366667
+ACTTCGTCAGTAAGGATGAGATTAGCAAAT
+>38_0.533333
+GCAGCAGGATCGGATCGAACTCTGGTTTCT
+>39_0.400000
+TAATGCGGCATTCTCCTGATTTATTGTCAC
+>40_0.400000
+AGCGTAATGATAATCGCTATCACTGCGATT
+>41_0.566667
+AGCTGACGGTCAGCAGGGATACTTCCTGCA
+>42_0.566667
+GCAGTGACTACATCCGCGAGGTGAATGTGG
+>43_0.466667
+GCTTTTTCCAGCATCAACGCCACTGAACAA
+>44_0.433333
+AAAGTGGTAGATAACGTGGTGCAGACTATG
+>45_0.500000
+TTCCTGATACCGGATGACCTTATCGCGGAT
+>46_0.466667
+ACCTGTACCCCAGGACCATGGTACATTTAT
+>47_0.533333
+ACAATGCAACCAGACCAGCCCGGATCGATA
+>48_0.500000
+GGGTAACCAGCTGATGATGGCCATTAACCT
+>49_0.433333
+CGTTATACGGAACAACATTTAACTCCAGCG
+>50_0.466667
+TTGCTGTTGCCATCGCTTTTCAGGACATAC
+>51_0.533333
+CGACGGTATCGGTACGCAGATTGTGATGGA
+>52_0.366667
+ATGAGCATCAACATCGAAATCTCAAACCAA
+>53_0.533333
+CCAGGCACTCCGCCATATTTTTGCCATGAC
+>54_0.400000
+GTATTCTTCATTGATTTGTAAGCGGGTACC
+>55_0.466667
+AAGCGCTGTTCAACATAAATTGGCTGACGG
+>56_0.433333
+AACCGTCAGCTCTTTACGCAATATTTTGCC
+>57_0.566667
+CGCGAAATCCTCGACGTCCAGGCACGTATT
+>58_0.300000
+GTTATCCATTAAAATAGATCGGATCGATAT
+>59_0.300000
+AAAATCTGCATATCATGATAAGAGTGGTTA
+>60_0.533333
+AATCTGGCGAATGCTGATAGCGTGACCGGT
+>61_0.366667
+TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT
+>62_0.366667
+AATCCTAAACCTAGGAATGCCAGAATATCT
+>63_0.566667
+TCACGCTCGCAGTCAAGCTGGCTTATGCCA
+>64_0.500000
+GAGATGACGGTTGCAGAGTCATGCGTTTGA
+>65_0.533333
+TCTGGATCACGCGCAAACACTGGCTATCGT
+>66_0.466667
+TCTGCTTTAGCAAACAGAGTGTGGTCACGA
+>67_0.400000
+GCCTTTTGTCTGATCATCCACAATAATGAC
+>68_0.566667
+GAAGGATAGTTGGTCAGCAACACCAGCGGC
+>69_0.733333
+GGCGCGCTGTCGGCCACGGCGAAATCGACC
+>70_0.466667
+TGGTGTTCAGCATCTCAACGGTAATTCGCT
+>71_0.533333
+CAGGATGCAAACTGCCGGGAGATCCAGTTA
+>72_0.533333
+AACTGGAAGGGCTTGGGATGACACAACAGC
+>73_0.500000
+TTTAAGCGCCAACCAGGCTTCTTTGGTTGC
+>74_0.433333
+ACCCTTCTTTCGCCATATCAAACTGATGTC
+>75_0.533333
+ATAACCCTCTGCAACCGCCGCTTCAGCAAA
+>76_0.600000
+TGAAGCCGTACAACGGGCGCTGGAATTCGC
+>77_0.700000
+GAGCTGCAACGCGGTCAGCCAGCTGGCGGT
+>78_0.566667
+CGGAGTATCCGTTCCCCAACGACAAGCATC
+>79_0.500000
+AATACCGGGAAGAGACAACGGGGTCTCTTT
+>80_0.500000
+TAATGACAGGGTTGCGAAGCCCTGATTCTC
+>81_0.433333
+ATTAATGTTGCCGGCACAACATAATAGGGC
+>82_0.500000
+ACTGGGTTGCTCTGAACAAGAAAGGCGCTA
+>83_0.533333
+CGCCAGGGACGTATCGCGTCGATATCTATT
+>84_0.533333
+TGCTCGTTCCCGTCGTGATGAAGCTCGAAA
+>85_0.500000
+AGGAAAGCAAACAACACGACCACCATCAGC
+>86_0.566667
+GGCAACGCAGGCGCATGATTCTGCTTGGAA
+>87_0.433333
+CGCTGGATGAAAANCGTGAATATCACACCA
+>88_0.533333
+CGTACCGGGCTGAAAGTAGAAGAGCGTTTC
+>89_0.466667
+ATTAAAAAACAGGCGGTGCGTTTTCCCTGG
+>90_0.466667
+ATCACCGTTTCGCTAACCGGTACGTTTAAC
+>91_0.566667
+TTCGCCCGGCAAGCTTACCCAACGCTTATC
+>92_0.533333
+TTTTCCCCGCCGTTAGTAGCGACTGCAGTT
+>93_0.400000
+TTATTTGCCCGATGAGTCAGTTTATTGCAG
+>94_0.466667
+CCACGGTGATATCTGGTGCCATACTGATAA
+>95_0.466667
+TCCCCCGTAAGGCCTTTCTTTTTCTTTCGT
+>96_0.533333
+TTGCCGGGAAGAGAGATATCAATGGCAGGC
+>97_0.566667
+TGCGCCGCCGGATTGTTGCTCAACATGCTT
+>98_0.366667
+AACGCGCTAACCGCCAATAATAACAAAATT
+>99_0.366667
+TAAGAGTTTATTCATGATGTCATCCTGCGA