Mercurial > repos > jjkoehorst > sapp
diff rnaseq/cutadapt/test-data/fsa_interval2maf.dat @ 11:a712b378e090
cutadapt added
| author | jjkoehorst <jasperkoehorst@gmail.com> |
|---|---|
| date | Sat, 21 Feb 2015 16:33:42 +0100 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rnaseq/cutadapt/test-data/fsa_interval2maf.dat Sat Feb 21 16:33:42 2015 +0100 @@ -0,0 +1,2703 @@ +##maf version=1 +a score=2047408.0 +s hg17.chr1 147984545 85 + 245522847 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG +s panTro1.chr1 129723125 85 + 229575298 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAG +s baboon.ENr231_1 81874 85 + 657133 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAG +s marmoset.ENr231_1 131543 85 + 772620 ATGGCGTCGGCCTCCTCCGGGATGTCGTCGGCGGTCGGTTTTTCATCCTTTGATCCCGGCGTCCCTTCCTGTACCTCGTCCTCAG +s galago.ENr231_1 75476 82 + 825110 ATGGCGTCGGCCTCCTCTGGGCCGCCGGCTCC---CGGATTTTCGTCCTGTGATCCCGGGGTCCCTCCCTGTGCCTCGACTTCAG +s rn3.chr2 68255714 76 - 258222147 ATGGCGTCCGCCTCCTCAGGGCCAGCGGC---GGCGGGGTTTTCACCCCTTGATTCCGGGGTCCCTGCCGGTACCGC------AG +s mm6.chr3 64351392 76 - 158945675 ATGGCGTCCGCCTCCTCAGGGCCAGCGGC---GGCCGGGTTTTCATCCCTTGATGCCGGGGCCCCTGCTGGTACCGC------AG +s rabbit.ENr231_1 70872 82 + 694075 ATGGCGTCGGCCTCTTCTGGGCCGTCGGC---GGTCGGGTGTTCAGCCTTGGATTCCGGGATCCCTTCCAGCACCTCGATCTCAG +s cow.ENr231_1 83601 82 + 1082283 ATGGCGTCTGCCTCCTCTGGGCCGTCGGC---GGTAGGGTTTTCATCCGCGGATTCCAGCGTCCCTCCCTGCACCTCGGCCTCAG +s canFam1.chr17 62947719 82 + 66886099 ATGGCGTCGGCCTCCTCTGGGCCGTCGGC---GGCTGGGGTTTCATCCTTTGATCCCGGGGTCCCTTCCTGTGCTTCGGCTTCAG +s rfbat.ENr231_1 76952 82 + 561098 ATGGCGTCGGTCTCCTCTGGGCCGTCGTC---GGGCGGGTTTTCGTCGGTGGATTCCGGGGTTCCTGGCTGCACCTCGTCCTCAG +s shrew.ENr231_8 4546 63 - 4749 ATGGCGTCGGCTCCGTTCGTAGTG----------------------CCTCCGATTCCGGGTCCTCCTCCTGCTCTATGATTATCT +s armadillo.ENr231_1 35525 82 + 758801 ATGGCGATGGCCTCCTCTGGACCGTCGAC---GACCGCGCTTTCATCCGTGGATACCGGAGTGCCTCCCTGCACCTTATCCTCAG +s tenrec.ENr231_3 2426 73 + 2724 ATGGCGACGGCCTCCTCTGGGCCGTCGAC---GACCGCGTATTCGCTCGCGGATTCCTG---------CAACACCTCGTCCGCAG +s monDom1.scaffold_18720 1604680 79 - 5714867 ATGGCGTCG---TCCTCCGGGTCGTCGTC---GGCCGGGAATACCTCCTTGGAGTTGGCGAGTAGCAGCGGCTCCTCCAGCTTCG +s tetNig1.chr21 1755128 81 + 5821691 CTAATGAAGAAATGCTCGGGGACGGCGCT---GGCCA-TCGCTCACAGCGTGGCCACACTCACCTTTCCCAGCCCTTCCCCCTGT +s fr1.chrUn 290894076 81 + 349519338 CTAATGAAGAAATGCTCGGGGACGGCGCT---GGCTA-TCGCTCACAGTGTGGCCACACTTAGCTTTCCCAGCCCTCCCCCCGCT + +a score=2837921.0 +s hg17.chr1 97444265 182 - 245522847 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s panTro1.chr1 99744907 182 - 229575298 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s baboon.ENr231_1 479199 182 - 657133 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s rheMac1.SCAFFOLD90935 33761 182 - 50918 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s marmoset.ENr231_1 544638 182 - 772620 GTTCTCAGCTT---------CCTTGCTTCCATGGTTCCAGCACCATTCGAAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGATGGCAGTATGCGCTCTATCACCACCAAACTCTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s galago.ENr231_1 619780 182 - 825110 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGCAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACAGAGGAGCAGCTTCAGCTACTGGTGGAGCAGATGGTAGATGGCAGCATGCGGTCCATCACCACCAAACTGTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s rn3.chr2 189865459 182 + 258222147 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGCAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGAGGTCCATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAATGGCATCATGTGA +s mm6.chr3 94493590 182 + 158945675 GTTCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATTCGCAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGAGGTCCATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAATGGCATCATGTGA +s rabbit.ENr231_1 529002 182 - 694075 GTTCTCAGCTT---------CCTTGCTTCCACGGCTCCAGCACCATTCGCAACCTCAAGGAGAGGTTCCACATGAGCA---------------------------------------------TGACGGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGCGCTCCATCACCACCAAGCTCTACGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s cow.ENr231_1 729607 182 - 1082283 GTTCTCAGCTT---------CCTTGCTTCCATGGTTTCAGCACCATCCGCAACCTCAAGGAGAGGTTCCACGTGAGCA---------------------------------------------TGACTGAGGAGCAGCTCCAGCTGCTGGTGGAGCAGATGCTGGACGGCGGCATGCGGTCTATTACCACCAAACTCTATGACAGCTTCCAGTGCCTCATCAATAGCATCATGTGA +s canFam1.chr17 3835678 180 - 66886099 --TCTCAGCTT---------CCTTGCTTCCATGGCTCCAGCACCATCCGCAACCTCAAAGAGCGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTCCAGCTGCTGGTGGAGCAGATGGTAGATGGCAGCATGCGGTCTATCACCACCAAACTCTATGACGGCTTCCAGTACCTCACCAATGGCATCATGTGA +s rfbat.ENr231_1 414085 180 - 561098 --TCTCAGCTT---------CCTTGCTTCCACGGCTCTAGCACCATCCGCAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGCGCTCCATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s shrew.ENr231_3 15159 180 + 52788 --TCGCAGCTT---------CCTTGTTTCCACGGCTCGAGCACCATCCGAAACCTCAAGGAGCGGTTCCACATGAACA---------------------------------------------TGACAGAGGAGCAGTTGCAGCTACTGGTGGAGCAGATGGTGGACGGGAGCATGCGCTCCATCACCACCAAACTCTACGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s armadillo.ENr231_1 553280 182 - 758801 GTTCTCAGCTG---------CCTTGCTTTCATGGCTCCAGCACCATCCGTAACCTCAAAGAGAGGTTCCACATGAGCA---------------------------------------------TGACTGAGGAGCAGCTTCAGCTGCTGGTGGAACAGATGGTGGATGGCAGCATGCGGTCTATCACCACCAAACTCTATGATGGCTTTCAGTACCTCACCAATGGCATCATGTGA +s tenrec.ENr231_10 2477 182 - 18834 GTTCTCAGCTT---------CCCTGCTTCCATGGCTCCAGCACCATCCGCAACCTCAAAGAGCGGTTCCACATGAGCA---------------------------------------------TGACCGAGGAGCAGCTCCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGCGCTCCATCACCACCAAGCTCTATGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s monDom1.scaffold_18720 4029570 182 + 5714867 GTTCCCAGCTG---------CCCTGCTTCCACGGCTCCAGCACCATCCGCAACCTGAAGGAGCGCTTCCACATGAGCA---------------------------------------------TGACCGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGTATGCGCTCCATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAATGGCATCATGTGA +s galGal2.chrUn 68039628 182 - 165033910 GCTCGCAGCTC---------CCCTGCTTCCACGGCTCCAGCACCATCCGCAACCTGAAGGAGCGCTTCCACATGAACA---------------------------------------------TGACGGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGCGCTCCATCACCACCAAACTGTACGACGGCTTCCAGTACCTCACCAACGGCATCATGTGA +s xenTro1.scaffold_485 499461 217 - 1001990 --ctcctgctttgaccattgccctgcttctgcctgttctctgcccttc-----------------tcctgcctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACGGAGGAGCAGCTGCAGGTCCTGGTGGAGCAGATGGTGGACGGCAGCATGAGGTCCATAACCACCAAACTGTACGACGGGTTCCAGTACCTGACCAACGGCATCATGTGA +s tetNig1.chrUn_random 10240092 182 + 171761319 GGTCCCACCTG---------CCGTGCTTCCACGGTTCCAGCACCATCCGCAGCCTGAAGGAGCGCTTCCACATGTCGC---------------------------------------------TGACGGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGCTGGTGGAGGGCTCGGTGCGCTCCATCACCACCAAGCTCTACGACTCCTTCCAGTACGTCACCAACGGCATCATGTGA +s fr1.chrUn 152584905 182 + 349519338 GGTCCCAGCTG---------CCGTGTTTCCACGGGTCGAGCACCATGCGGGGTTTGAAGGAACGTTTCCACATGAGTC---------------------------------------------TGACAGAGGAGCAGCTCCAGCTGCTGATCGATCAGCTGGTCGAGGGCTCGATGAGGTCGCTGACGACCAAACTCTACGACGGCTTCCAGTACCTGACAAATGGAATCATGTGA +s danRer2.chr16 37377307 182 + 42763181 GTTCACAGCTC---------CCCTGCTTCCATGGCTCCAGCACTATCCGCAACCTGAAGGAGCGATTCCACATGAACC---------------------------------------------TGACGGAGGAGCAGCTGCAGGTGCTGGTGGAGCAGATGGTGGACGGCTCCATGCGCTCCATCACTACCAAACTGTACGACGGCTTCCAGTATCTGACCAACGGTATCATGTGA + +a score=409346.0 +s hg17.chr1 148185136 5 + 245522847 ATGGA +s panTro1.chr1 129935611 5 + 229575298 ATGGA +s baboon.ENr231_1 278995 5 + 657133 ATGGA +s rheMac1.SCAFFOLD121325 11475 5 - 22448 ATGGA +s marmoset.ENr231_1 336864 5 + 772620 ATGGA +s galago.ENr231_1 381115 5 + 825110 ATGGA +s rn3.chr2 68486927 5 - 258222147 ATGGA +s mm6.chr3 64570939 5 - 158945675 ATGGA +s rabbit.ENr231_1 283177 5 + 694075 ATGGA +s cow.ENr231_1 603768 5 + 1082283 ATGGA +s canFam1.chr17 63150913 5 + 66886099 ATGGA +s rfbat.ENr231_1 227585 5 + 561098 ATGGA +s shrew.ENr231_13 22682 5 + 36462 ATGGA +s elephant.ENr231_1 113827 5 + 387165 ATGGA +s tenrec.ENr231_20 93 5 - 13226 ATGGA +s monDom1.scaffold_18720 1804396 5 - 5714867 ATGGA +s platypus.ENr231_1 4282 5 - 10983 gccca + +a score=625667.0 +s hg17.chr1 148185141 99 + 245522847 AGCGTTTTTGGGGTCGC-----------------GGTCCGGACTTTGGGCGGGGGGTC---------CGGCCCC-AGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGC +s panTro1.chr1 129935616 99 + 229575298 GGCGTTTTTGGGGTCGC-----------------GGTCCGGACTTTGGGCGGGGTGTC---------CGGCCCC-AGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGC +s baboon.ENr231_1 279000 99 + 657133 AGCGTTTTTGGGGTCGC-----------------GGTCCGGACTTTGGGCGGGGGGTC---------CGGCCCC-AGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCAGC +s rheMac1.SCAFFOLD121325 11480 99 - 22448 AGCGTTTTTGGGGTCGC-----------------GGTCCGGACTTTGGGCGGGGGGTC---------CGGCCCC-AGGACAGTTTTACCGCATTCCATCCACTCCCGATTCCTTCATGGATCCAGC +s marmoset.ENr231_1 336869 99 + 772620 AGCGTTTTTGGGGTCGC-----------------GGTCCGGACTTTGGGCTGGGGGTC---------CGGCCCC-AGGACAGTTTTACCGCATTCCGTCCACTCCTGATTCCTTGATGGATCCGGC +s galago.ENr231_1 381120 99 + 825110 ATCGTTTTTGGAGCCGT-----------------GGTCTGGACTTTGGGCCGGGGGTC---------CGGCACC-CGGACAATTTTACCGCATCCCGTGCACTCCCAGTTCCTCCATGGACCCGGC +s rn3.chr2 68486932 99 - 258222147 AGCGTTTTGGGAGTCAC-----------------GGACTGGCCACTGGGCCGGGGGTC---------CGGCTCC-GGGGCAGTTTTACCGCGTCCCGTCCACCCCCAGCTGCCTCATGGATCCGAT +s mm6.chr3 64570944 99 - 158945675 AGCGTTTTGGGAGTCAC-----------------GGGCTGGCCACTGGGCCGGGGGTC---------CGGCTCC-AGGGCAGTTTTACCGCATCCCGGCCACCCCCAGCGGCCTCATGGACCCGGC +s rabbit.ENr231_1 283182 99 + 694075 AGCGTTTCTGGAGTCGC-----------------GGGCCGGGCTTTGGGCCGGGGGCC---------CAGCTCC-TGGACAGTTTTACCGCATCCCGTCCACTCCTGCTTCCTCCGTGGATCCGGC +s cow.ENr231_1 603773 99 + 1082283 AGCACTACTGGAGTCGC-----------------GGTCCGGACTTTGGGCCGGGGGTC---------CGGCCCC-CGGGCAGTTTTACCGCATTCCGCCCACTCCCGGTTCCTCTGTGGACCCGGT +s canFam1.chr17 63150918 99 + 66886099 AGCCTTTCTGGAGTCGC-----------------GGTCCAGAGTTTGGGCCGGTGGTC---------CCGCCCC-GGGGCAGTTTTACCACATCCCGCCTAGTTCCGTCGCCTCCGTGGAGCCGGC +s rfbat.ENr231_1 227590 99 + 561098 ATCGTTTTGCGAGTCGC-----------------GGTCCGGACTGTGGGCTGGGGGTC---------CGGCCCC-CGGGCAGTTTTACCGCATTCCGCCCACTCCCGGTTCCTTGGTGGACCCGGC +s elephant.ENr231_1 113832 99 + 387165 AGGGTTCTTGGAGTCAC-----------------GGTCCGGGCTTTGGGCCGGGGGTC---------CGGCTCC-GGGGCAGTTTTACCGCATCCCGCCCACTCCGAGCTCCTTCGTGGATCCGGC +s tenrec.ENr231_20 98 76 - 13226 CGCGTTCTCGGAGCCGC-----------------GGTCTGGGCTTTgggccggcggcc---------cggcccc-ggggcAGTTTTACCGCGTCCCCTCCACT----------------------- +s monDom1.scaffold_18720 1804401 99 - 5714867 ACCGTTGTTAGAAGTGC-----------------AGTCGGGCTTTTGGGCCGGGGGCC---------CCTCACC-GGGCCAGTTCTACCGCATCCCGCCCATCTCGGGAGCCGTTCTGGGGCCAGA +s platypus.ENr231_1 4299 105 - 10983 gacttgcccacagttacacagctgacaagtggcagagccgggattcgaacccgcggcctctgactccccagccc-gggctctttccaccgagccgcgccgcttctc-------------------- +s galGal2.chrUn 67951116 73 - 165033910 AGCGTGC---GCGCCGC-----------------GGCC---GTTGTGGGCCGGGGGTC---------CCTCCCCGGGGGCAG-------------CGTACAGCCCCGG-------GGGGATCGGG- + +a score=228740.0 +s hg17.chr1 148185240 36 + 245522847 GTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA +s panTro1.chr1 129935715 36 + 229575298 GTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA +s baboon.ENr231_1 279099 36 + 657133 GTCTGCACTTTACAGAGGTCCAATCACACGGACCCA +s rheMac1.SCAFFOLD121325 11579 36 - 22448 GTCTGCACTTTACAGAGGTCCAATCACACGGACCCA +s marmoset.ENr231_1 336968 36 + 772620 GTCCGCGCTCCACAGAGGTCCGATCACGCGGACCCA +s galago.ENr231_1 381219 36 + 825110 ATCGGCGCTCTCCGGGCGTCCGATTACGCGGACGCT +s rn3.chr2 68487031 36 - 258222147 GTCTGCGCCCTGCGAGGGTCCCATCACTCGGACCCA +s mm6.chr3 64571043 36 - 158945675 GTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCA +s rabbit.ENr231_1 283281 36 + 694075 GTCCGCGCTCTGCGGGAGTCCGATCGCGCGGACCCA +s cow.ENr231_1 603872 36 + 1082283 GTCCGCGCTGTACGGGAGTCCGATTACGCGCACCCA +s canFam1.chr17 63151017 36 + 66886099 GTTTTCTCCTTACGGGGGTCCGGTTACGCGCACGCA +s rfbat.ENr231_1 227689 36 + 561098 GTCCGCGCTCCACGGCGGCCCGATTACGCACACTCA +s elephant.ENr231_1 113931 36 + 387165 GTCCGCACCCTACGGGGGTCCGATTACGCGGACCCA +s tenrec.ENr231_20 174 35 - 13226 -TCCGGTCCCTGCGGGGCTCCGACTACGCGGACCCA +s monDom1.scaffold_18720 1804500 36 - 5714867 CAGCATTGCCTGCGCAGGCCCGATTACTCGGACGCA +s platypus.ENr231_1 3617 33 - 10983 GTCAGCGC---GGGGAGCCCCTTTCATCCGGACACA +s galGal2.chrUn 67951189 35 - 165033910 ATTGGGGCCGGACTGCGGCCCTACAGC-CGTACCTT + +a score=555285.0 +s hg17.chr10 80161942 63 - 135413628 AGT------TTGAACAATATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAAT---CTACTTCACTGTAA +s panTro1.chr8 82159463 63 - 138322177 AAT------TTGAACAATATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAAT---CTACTTCACTGTAA +s baboon.ENr114_1 440560 63 - 584309 AAT------TTGAACAATATTGTCGAGGAAACTGAAAAGCAATCTCACAGTCAAT---CTACTTCACTGTAA +s rheMac1.SCAFFOLD70304 20932 63 - 66826 AAT------TTGAACAATATTGTCGAGGAAACTGAAAAGCAATCTCACAGTCAAT---CTACTTCACTGTAA +s marmoset.ENr114_1 479983 63 - 685353 AAT------CTGAACAATATTGTCGAGGGAACTGAAAACCAATCTCACAGTCAAT---CTACTTCCCTGTAA +s galago.ENr114_1 369087 63 - 502320 AAT------CTGAACGATATTGATGAGGGGATTGAAGGACAATCTTACAGCCAGT---CAACCTCACTGTGA +s rn3.chr20 40770076 63 - 55296979 ACG------TTGGTTAGAGTTGTTGAAGGGATTGACGTGCAAACTCACAGTCAGT---CAACGTCCTTGTAA +s mm6.chr10 74727059 63 + 130291745 ACG------TTGGTTAGAGTTGTTGAGGGAATTGACGTGCAACCTCACAGTCAAT---CAACATCTTTGTAA +s rabbit.ENr114_16 116739 63 - 209963 AAT------TTGAATGATGTTGTTGAGGGAATTGAAAAACAATCTCACAGTCAAT---CTACTTCACTATAA +s cow.ENr114_1 468464 66 - 523404 AAT------TTGCACAATATTGTTGAAGGAATTGAAAAACAGTCTCACAGTCATTCTACTACTTCACTGTAA +s canFam1.chr26 36578478 63 + 41009621 AAT------TTGCACAGTTTTGCCGAGGAAACGGAGAACCAATCTCACAGTCAAT---CTACTTCACTGTAA +s rfbat.ENr114_1 288291 63 - 353074 AAT------CTGCACAATATTGTCGAGGGAATTGAAAAACAATCTCACAGTCAAT---CTACTTCACTGTAA +s shrew.ENr114_14 93 63 + 1248 AAT------TTGCAAGAAATTGTGGAAGAAAATGAAAATCAATCTCACAGTCAAT---CTACTTCACTGTAA +s armadillo.ENr114_1 393483 63 - 434329 AAT------TTGAACAATATTGTCCAGGGATCTGAAAAACAATCTCACCATTAAC---CTACTTCACTCTTA +s monDom1.scaffold_13316 1880926 63 + 4912536 AAC------TCTGGCTGTGCTGCTGAAGAGCTTGAGAATCAACTTTTCTTTCAAT---CTACAGCACTCTAA +s platypus.ENr114_1 91217 69 - 121090 AATGGAACCTTGAGCAGTATTGTTGAAGAACTTGAAAAACAATTTCCATCCCAAT---CTACCGCATTATAA +s galGal2.chr6 5980197 69 + 33893787 AACGGCAACTTGAGCTGTGTTGTGGAGGAGCTTGAGAAACGCTTTCCATCTCAGT---CGACAGCACTGTAA +s xenTro1.scaffold_94 661136 63 + 2448135 AAC------TTGAGTTGTGTTGTCGAGGAGCTCGAAAAGCGCTTTCCTTCACAAT---CCACAGCACTGTAA +s danRer2.chr12 32202185 63 - 35164833 AGC------ATGAACTCAGTAGTGGAGGAGCTGGAGAAACGCTTTCCATCTCAGT---CCACTGTTCTGTGA + +a score=238720.0 +s hg17.chr10 80161855 87 - 135413628 TA---TCTA---CGCACAAATGTTTCAGAACTTCAAACTA-------TGTG-CC----CT-TCAGAAGTAACAAATATGGAAA-----TCACA-TCTGAA----CAAAACAAG--GGG +s panTro1.chr8 82159376 87 - 138322177 TA---TCTA---CGCACAAATGTTTCAGAACTTCAAACTA-------TGTG-CC----CT-TCGGACGTAACAAATATGGAAA-----TCACA-TTTGCA----CAAAACAAG--GAG +s baboon.ENr114_1 440473 87 - 584309 TA---TCTA---CGCACAAATGTTTCAGAACTTCAAACTA-------TGTG-CC----CT-TCAGAAGTAGCAAATATGGAAA-----TCACA-TCTGAA----CCAAACAAG--GAG +s rheMac1.SCAFFOLD70304 20845 87 - 66826 TA---TCTA---CGCACAAATGTTTCAGAACTTCAAACTA-------TGTG-CC----CT-TCAGAAGTAACAAATATGGAAA-----TCACA-TCTGAA----CCAAACAAG--GAG +s marmoset.ENr114_1 479896 87 - 685353 AA---TCTA---CGCACAAATGTTTCAGAACTTCAAACTA-------TGTG-CC----CT-TCAGAAATAACAAATATGGAAA-----TCACA-TCTCAA----CAAAACCAG--GAG +s galago.ENr114_1 369000 87 - 502320 TA---TCCA---CTCACAAACATCTCAGAACATCAAACTA-------TTTG-CC----CT-CCAGAGATAATAAATGTGGAAA-----TCACA-CCTGAA----CAAAACCGG--GAG +s rn3.chr20 40769989 87 - 55296979 TG---TCCA---CCCACAGAGCTCTCAAAACTCCACCCCT-------TTTG-TC----CT-GCAGAGAAAACAAACATGAAAA-----TCACA-TGTGAC----CAGAGCCAG--GAA +s mm6.chr10 74726972 87 + 130291745 TG---CCCA---CCTGCAGATCCCTCAAAACTACACACGT-------TTTG-CC----CT-GCAGAGAAAACAGGCATGAAAA-----TCACA-CATGAC----CAGAGCCAG--GAA +s rabbit.ENr114_16 116652 87 - 209963 TA---TCCT---CCCACAAACGTTTCAAAACTTCAAACGA-------TTTG-CC----CT-TCAGAGATAACACATATGGAAA-----ACACC-TGTGAA----CAAAACCAG--GAA +s cow.ENr114_1 468377 87 - 523404 AA---TCCA---CCAGCACAACTCTCCAAACTTCAAATGA-------GTTG-TC----CT-TCAGAGACAACAAATACGGAAA-----TGACA-TCTGAA----TAAAACCAG--GAG +s canFam1.chr26 36578391 87 + 41009621 TT---TCCA---GCAACACACAGCTGGAAACTAGAGACAA-------GTTG-CC----CT-CCAGAGAGAGAAAATGTGGACG-----TGACG-TCTCAA----CAACCCCAG--GGG +s rfbat.ENr114_1 288204 87 - 353074 TA---TCCA---CTAACACACAACCCAAAATTTCAGACTA-------GTTG-CC----CT-TCAGAGATAACAAATATGGAAA-----TGACA-TCTGAA----CAAAATCAG--GAG +s shrew.ENr114_14 5 88 + 1248 TT---CCCA---CCCAAACAGATTTCAAAACTTCCAACTA-------GTTGGCC----CT-TCTGAATTAACAAATATGGAAA-----TGAGA-TCTGAA----CAAAAACGA--GAA +s armadillo.ENr114_1 393396 87 - 434329 AA---CCCC---CCCACACACAGTTCAAAACTTCAATTTA-------CTTG-CT----CT-CCAAAGTTAACAGATATGGAAA-----TTACA-TCTGAA----CAAACCCAG--GAG +s monDom1.scaffold_13316 1880839 87 + 4912536 TC---ATCA---CCCACACAGAGTTCCAAGCT-CAAGCCA-------GCTG-CCA---CC-CCTCAGCCACCCACTACAGGAA-----CTGTG-ACTGAA----CAAATGCAG--CTG +s platypus.ENr114_1 91127 90 - 121090 CA---TCCAATACCTAAGCATGTGATGAAGCCT-AAACAA-------CTCG-CT----CAACCAGCTCTTCCAAATACAGAAA-----TTGTG-GCTGAG----CAGAATCAG--CAG +s galGal2.chr6 5980107 90 + 33893787 CACGTTCTG---CCCAAGCACATCTCTAAGCT-CAAACCA-------GTTG-CAA---CG-CCAGAGCTGCCAACTCCCGAGG-----CTGCA-GCTGAG----CACAACCAG--CAG +s xenTro1.scaffold_94 661040 96 + 2448135 AT---TACG---TCAAAACAAATTCCAAAATCCCGATCT--------TTTA-CAACAACC-CCAGAAAATCAGATTTCAGAGA-----CTGCA-CCCGAGTATGCAAAACAAAATGGA +s fr1.chrUn 340429676 83 - 349519338 TG---CCCA---A----------------GCTTCATCCTAAACCACAAGTG-A-----CT-GAAGAATCCGAAGACACCGAAAGTACTCAAAGCTCGGAT----CCCTGGGAT--GAG +s danRer2.chr12 32202080 80 - 35164833 CG---CCCA---C------------TAGTGATCAACCCTAAACCGCAAGTG-T-----CT-GTCGAACCAGAGGCTGGTGTAA-----CAGAG-GCGGAG----CCTGCTCAA--GA- + +a score=938384.0 +s hg17.chr10 80161742 113 - 135413628 CAGTGTGT---AAAACAGACCCT------CAG-AGAGAACCAAAAGGCATCCTCAGACACGTTAAAAACTTAGCAGA-ACTTGAAAAATCAGTAG-CTAACATGTACAGTCAAATAG---A-AAAAAAC +s panTro1.chr8 82159262 114 - 138322177 CAGTGTGT---AAAACAGACCCT------CAG-AGAGAACCAAAAGGCATCCTCAGACATGTTAAAAACTTAGCAGA-ACTTGAAAAATCAGTAGTCTAACATGTACAGTCAAATAG---A-AAAAAAC +s baboon.ENr114_1 440360 113 - 584309 CAGTGTGT---AAAACAGACCCT------CGG-AGAGAACCAAAAGGCATCCTCAAACATGTTAAAAACTTAGCAGA-ACTTGAAAAATCAGTAG-CTAACATGTACAGTCAAATAG---A-GAAAAAC +s rheMac1.SCAFFOLD70304 20732 113 - 66826 CAGTGTGT---AAAACAGACCCT------CGG-AGAGAACCAAAAGGCATCCTCAAACATGTTAAAAACTTAGCAGA-ACTTGAAAAATCAGTAG-CTAACATGTACAGTCAAATAG---A-GAAAAAT +s marmoset.ENr114_1 479785 111 - 685353 --GTGTGT---AAAACAGATCCT------CAG-AGAGAACCAAAAGGCATCCTCAAACATGTTAAAAACTTAGCAGA-ACTTGAAAAATCAGTAG-CTAACATGTACAGTCAAATAG---A-AAAAAAA +s galago.ENr114_1 368884 116 - 502320 CAGTGGCCCCAAAGACTGACCCT------CCA-CGGGAACCAAAGGGAATCCTCAAACATATTAAAAACTTAGCAGA-ACTGGAAAAGTCAGTTG-CTAACATGTACAAGCAAATAG---A-AAAGAAC +s rn3.chr20 40769876 113 - 55296979 CACCGTGT---GGGGCGGAACCC------CAC-AGACATCCCAAAGGGATCCTCAGGCACGTGAAAAACCTGGCAGA-GCTCGAGAAATCGGTGT-CTAACATGTACAGTCACATCG---A-GAAAAAC +s mm6.chr10 74726859 113 + 130291745 CGCAGTGG---GGGGCAGAACCC------CAC-AGACATCCAAAAGGGATCCTCAGACATGTGAAAAACTTGGCAGA-GCTCGAGAAATCAGTGT-CTAACATGTACAGTCACATAG---A-AAAAAAC +s rabbit.ENr114_16 116539 113 - 209963 CAGTGGGT---AATGCAGACCCT------CAG-AAAGAACCAAAAGGCATCCTCAAACATATTAAAAACTTAGCAGA-ACTTGAAAAATCAGTAG-CTAACATGTACAGTCAAATAG---A-AAAAAAC +s cow.ENr114_1 468264 113 - 523404 CACTGTGT---AATGCAAATCCT------CAA-AGGGAACCAAAAGGCATTCTCAAACATGTAAAAAACTTAGCAGA-ACTGGAAAAGTCAGTGG-CTAACATGTACAGCCAAATAG---A-AAAAAAT +s canFam1.chr26 36578278 113 + 41009621 CCGTGTGT---GACACAGACCCC------CAG-AAACAACCAAAGGGCATCCTCAAGCATATAAAAAACTTAGCGGA-CCTTGAAAAGTCAGTTG-CTAACATGTACAGTCAAATAG---A-AAAAAAC +s rfbat.ENr114_1 288091 113 - 353074 CAGCATGT---CATGCAGATCCT------CAA-AGAGAGCCAAAAGGAATCCTCAAACATGTGAAAAACTTAGCAGA-ACTTGAAAAGTCAGTAG-CTAACATGTACAGTCAAATAG---A-AAAAAAC +s armadillo.ENr114_1 393292 104 - 434329 CAGTGTGT---AGA---------------CAA-AGAGAACCAAAAGGCATCCTCAAACATATTAAAAACTTAACAGA-AATTGAAAAGTCAGTGG-CTAACATGTACAGTCAAATAG---A-GAAAAAC +s monDom1.scaffold_13316 1880723 116 + 4912536 CAGACCCA---AGTCCTGCACCT------CGA-AGGGAACTGAAAGGCATCCTCAAAAATATCCCGAACTTAGCAGC-CATTGAGAGGTCAGTAG-CAAACATGTACAGCCACATAGGCCA-AAAACAC +s platypus.ENr114_1 91017 110 - 121090 ---TGATA---CCCACAGGTCCT------AAG-AGGGAATTGAAAGGCATACTCAAAAATGTCCCAAATTTGGCAGA-TATTGAAAAGTCAGTGG-CTAACATGTACAACCAAATAG---A-CAAAAGG +s galGal2.chr6 5979994 113 + 33893787 CAGTGCCA---GAGCCACCTCCC------CGT-AGGGAGCTGAAAGGTATTCTTAAAAACATTCAGAATTTAGCAGC-GATTGAAAAGTCCGTGG-CCAATATGTACAGCCAAATAG---A-CAAAAAC +s xenTro1.scaffold_94 660924 108 + 2448135 ------CT---CAACCAGATCCTGGCCCACGC-AGAGAGCTAAAGGGAATCCTCAAACATATTCACAACTTAGCCGA-GATTGAAAAATCCGTAG-CTAACATGTACAATAAAATTG---A-CA----- +s tetNig1.chr2 5926437 105 + 19247847 -------------CAGTACCCCT------CGA-AAGGAGCTGAAAGGGATCCTGAAGAACATCCACAACATCGCAGACCATCGAGAAGTCCGTGG-CCAACATGTTGAGCCAGATCG---ATCAGAAAC +s fr1.chrUn 340429566 103 - 349519338 -------------CTGTGGGAGG------AAA-AAGGAGCTCAAAGGGATCCTGAAAAACATCCAGAATCTCGCTGA-CATAGAGAGGTCCATTG-CCAACATGTACAGCCAAGTAG---A-CAAAAAC +s danRer2.chr12 32346428 105 - 35164833 -------------CAGAGCCTCC------CAAGAGGGAACTCAAGGGGATCCTTAAGAACCTCCAGAACATAGCAGA-CATCGAGAAATCTGTTG-CCAATATGTACAGTCAAATAG---ATAAAAAGC + +a score=-90144.0 +s hg17.chr10 80161494 248 - 135413628 ---ccctct----------tcc---------tcttcctcctc---------ctA---------CATTTTTT----------CCACTTTC-----------------------------------CGTTTCAACGTCTGGTCCCCC--------------------------------AACACCAC-----CT------------------C---------TTCTACCTCCATTTCCAACTCCTCTTCCTCCACCACCTCCTTC---TATTC--------C--TTGCCCTCCACCTCCTT--CAGCTTCATTTCTGTCCACAGAGTGTGTCTGTATAAC---AGGTGTTA-------AATGCACGACCAACTTGATGCC-TGCCGAGAAAATTAAGTCCTCTATGACACAGCTATCAACAACGA +s panTro1.chr8 82159037 225 - 138322177 ---------------------------------------------------------------CATTTTTT----------CCACTTTC-----------------------------------CATTTCAACGTCTGGTCCCCC--------------------------------AACACCAC-----CT------------------C---------TTCTACCTCCATTTCCAACTCCTCTTCCTCCACCACCTCCTTC---TATTC--------C--TTGCCCTCCACCTCCTT--CAGCTTCATTTCTGTCCACAGAGAGTGTCTGTATAAC---AGGTGTTG-------AATGCACGACCAACATGATGCC-TGCCGAGAAAATTAAGTCCTCTATGACACAGCTATCAACAACGA +s baboon.ENr114_1 440115 245 - 584309 ---ccctct----------tcc---------tcttcctccGT---------CTA---------CATTTTTT----------CCACTTTC-----------------------------------CATTTCAACTTCTGGTCCCCC--------------------------------AACTCCAC-----CA------------------C---------TTCTACCTCCATTTCCAACTC---TTCCTCCACCACCTCCTTC---TATTC--------C--TTGCCCCCCACCTCCTT--CAGCTTCATTTCTGTCCACAGAGTGTGTCTGTATAAC---AGGTGTTA-------AATGCACGACCAATATGATGCC-TGCCGAGGAAATTAAGTCCTCTATGACACAGCTATCAGCAACAA +s rheMac1.SCAFFOLD70304 20487 245 - 66826 ---ccctct----------tcc---------tcttcctcctt---------ctA---------CATTTTTT----------CCACTTTC-----------------------------------CATTTCAACTTCTGGTCCCCC--------------------------------AACTCCAC-----CA------------------C---------TTCTACCTCCATTTCCAACTC---TTCCTCCACCACCTCCTTC---TATTC--------C--TTGCCCCCCACCTCCTT--CAGCTTCATTTCTGTCCACAGAGTGTGTCTGTATAAC---AGGTGTTA-------AATGCACGACCAATATGATGCC-TGCCGAGGAAATTAAGTCCTCTATGACACAGCTATCAGCAACAA +s marmoset.ENr114_1 479532 248 - 685353 ---ccctct----------tcc---------tcttcctcctc---------ctcc------tccACTTTTT----------CCACCATC-----------------------------------TGTTCCTTCTTCTGGTCCCCA--------------------------------AACTCCAC-----CT------------------C---------TTCTACCTCCATTTCCAACTC---TTCCTCCACCACCTCCTTC---TATTC--------C--TTGCCCACCACCTCCTT--CAGCTTCATTTCTGTCCACAGAATGTGTCTGTATAAC---AGGTATTA-------AATGCACGACCAACACAATGCC-TGCCGAGGAAATTAAGTCCTCTATGACACACCTATCAACAACAA +s galago.ENr114_1 368657 227 - 502320 ---ccttct----------tcc---------tcctc---------------------------ccccGTTT----------CCACTTTC-----------------------------------TCTTCCTACATTGG---CAGC--------------------------------ACCTCTGC-----CC------------------C---------TTCCACCTTCACTTCCAACCC---TTCCTCCACCACCTC---------TTC--------C--TTGTCCGCTGCCTCCTT--CAGATGCATTTCTGTCCACGGAGTGTGTTTGCATGCC---AGTTGATA-------AAGGGACTATCAACAAGACACC-TGCCAGTGAAATTAAACCCTCTGTGACACAGCTTCCAGCATCAG +s rn3.chr20 40769628 245 - 55296979 ---ccctcc----------tcg---------ccccc---------------------------aacttctt----------acattttc-----------------------------------tcttccCATTTCTACAACCCCCGCCT--------------------cttctcttcctcctc-----ct------------------c---------ctccaccatcacttcctcctc---ctcctcGACCACCAGCTCC---CCGCC--------T--TTTCCCACTGCCTCCTT--CCACTTCCGTCCCATCCACAGACAGCATCTCTACACC---AGCTGCTA-------AATGCACTGCCAGTGTCACACA-CGCCAGAGAAACTA---TGTCTACGACACAGCCACCAGCATCCA +s mm6.chr10 74726611 245 + 130291745 ---ccctcc----------tcc---------cccac---------------------------aacttgtt----------acattttc-----------------------------------tcttcccatttctacaccccctactt--------------------cttctctacctcttc-----ct------------------c---------ctccactgtcacttcctcctc---ctcctcGGCCACCAGCTCC---CCGCC--------T--CTTCCCACAGCCTCCTT--CCACGTCCATTCCATCCACAGACAGCATCTCTGCACC---AGCTGCTA-------AATGCACTGCCAGTGCCACACA-CGCCAGAGAAACCA---CGTCTACGACACAGCCACCAGCATCCA +s rabbit.ENr114_16 116328 208 - 209963 ----cctcc----------tct---------ccctc---------------------------cacttctc----------cccctttc-----------------------------------agttccttcatctacaccctc-----------------------------------ttctt-----ct------------------c---------ctccactaccgccgcctcttc---c-------------------------------------atgcccacctccttctG--CAGTTTCAGGACTATCCACAGAGTGTGTTTGCATACC---TCCTGATG-------AATGTACTACCAGTTTGACACC-TGCCAAGGAAAGTAAATTCTCTGTGACACAGCTACAAACACCAA +s cow.ENr114_1 468023 232 - 523404 ----cctct----------tcc---------tccac---------------------------atct---t----------ctactttc-----------------------------------tgttccctctcctccttcctc--------------------------------tacttctc-----ct------------------c---caccttttctaccttcacttccccctc---ttcctccagcatctcctcc---tcgtc--------c--tTCGTTACTGCCTCCTT--CAATGTCAGTTCCATCCACCACGTGTGCGTTTACACC---AGCTATTG-------AACGTACTGTCAATGTGACACC-AGCCAAGGAAGTGAAATCCTCTATGATACAGTTGTCAA------ +s canFam1.chr26 36578046 223 + 41009621 ----ccatt----------tct---------ccca-------------------------------------------------ctttc-----------------------------------caccccaccttctcctccctc--------------------------------ttcttctc-----ca------------------t---cacctcttctaccttcacttccctccc---tccccccaccatcacctcc---tcttc--------c--ttctcctcTGTCCCCTC--CGTCTTGGGCTCCATCCACTACGTGTGTCTGTGTACC---AGTTGTGA-------AGCACACTGTCAGTGTGACACC-TGCCGAGGACGTGGAGCCCTCTGTCGCACAGCTACCAG------ +s rfbat.ENr114_1 287844 238 - 353074 ----cctct----------tcc---------ttttc---------------------------ctctgctt----------ccactttc-----------------------------------tgtgtcctcttctcctccctc--------------------------------tacttctc-----ct------------------cttccacctcttctttctTCACTTCCCTGTC---TTCCTCCAACACTCCCTCC---TCTTC--------C--TTCTCCAGCACCTCCTT--CAATTTCAGTTCCATCCACTATGTGTGTTTGTACACC---AGCTGTTA-------AACACACAGTCAGTGTGACACC-ACCCAAGGAAATGAAGTCTTCTGTGATACAGCGATCAA------ +s shrew.ENr114_9 25340 220 + 28685 ----cttcc----------tcc---------tccac---------------------------cttttcat----------ccactttc-----------------------------------tattcc---tcctccccccac--------------------------------tacctccc-----ct------------------c---------------ctccatttcccactc---tccctccaccgcctcctcc---tcttc--------c--ttctccAGTGATTACTT--CAGCATCTTTTCCATCGCCAAAGTATGTTTGTATGC----AGATGTTA-------AGCATACTGCCAGTGTAACACCTAAACAAGGAAATGGATTCTTCTGTGATGCAACTGTCAA------ +s armadillo.ENr114_1 393075 217 - 434329 ----tctgt----------tcc---------tcctc---------------------------cttctcct----------cctctctc-----------------------------------ttctcc-----------------------------------------------tcccccAT-----TT------------------C---------TTGCACCATCATTTCCTGCTC---TTCCTCCACCATCTCCCTT---TCTTC--------T--TTCTTCACTGCCTCCTT--CAGATTCAGTTTCATCCACAGAACGTAGTTGTAAACC---AATTGACA-------AATGCACTGTCAACTTGACACC-TGTCAAGCAAATTA---CATCTCTGTTACAGCAGTCAACATCGA +s monDom1.scaffold_13316 1880446 274 + 4912536 AAGCCAACT----------TCT---------CCATC---------------------------TCCTTTTTGGATATCAAAACACAGTC-----------------------------------CTCAACATTATTTGTCCCCCAAGACAAGGGAGAAAATGATAGAGAATATTCCAGACCCCCCTAACAcc------------------c---------ctccacctttccctcctcctc---cccttccaccaccacc-------------------------accactgccacctc--ctgcttcactcattccctcatgctccccatccAGCCC---TGGTGTTT-------GGCATCGCTCCATGCTCTCCCC-TGCAAGAGAAAAGGACTCTTTGGCTAGGCAGCTATCCCCAGTGG +s platypus.ENr114_1 90812 199 - 121090 ----tctcc----------aca---------tccct---------------------------cttgtctt----------ctgcctcc-----------------------------------cactcccttttctct--------------------------------------ttcttctc-----ct------------------c---------ctcccccttttcttcctcctc---ctcctACCCCACCACCACA---GTTAC--------C--TCCATCTCCACCTCCTC--CAATTCCTTTCCCAACT----------TCTGTAAATC------------------------CTATCAGCCTCTCCTC-TGTCAGACACAATAATCCCCCCAATGTGCAGCCATCAA------ +s galGal2.chr6 5979746 233 + 33893787 AAGTTTTCT----------AGC---------TCCTCAGACCAAAGGAGAAGTTACAGAAAACATTCCAGAC----------CCACCTAA-----------------------------------AActcccccaccccctcctcc--------------------------------tctactgc-----ct------------------c---------ctccacctccatcccctcctc---ttttgccaccccatcctccaactctgc--------c--cctcgcttctgttcctt--cttcttcatctcttcctA----------------------------------------GCACCCAACACCTTTCCCC-TGCAAAGCATTCAAAATCCCCTGCCAAACAGCCAGCTG------ +s xenTro1.scaffold_94 660688 227 + 2448135 ------TCT----------TCCAGAAGAACCCCTTG---------------------------AAATACCT----------TCACCTTC-----------------------------------TCCCACACCTCCTCCATTAGA--------------------------------TACTCCAT-----CA------------------C---------CTGCGCCACAATCTCAACCAA---CTCCTTTAGCACCTCCACC---TCCAC--------CATTTCTCCAAGACCTTCT---------CACCTCTAGC-------AGTTTACGTAATCCTTTATTTCATA-------TAGCTCCTTCCGATTTGTCTGC-TGCAAAGGACAAACTATCTCCTATCAGAACATCACCAT------ +s tetNig1.chr2 5926174 259 + 19247847 cgcaccctcctt--cttcacct---------ccgcc---------------------------accaccCG----------CCGGGGGCTTCTCCTCACC-CTGACCAC-GGGGAAAAGACGACGCTtcctacccctccccctcg--------------------------------tcctcctc-----ct------------------c---------ctcctcctccaccaccacccc---ctcctcctTTGCCTCCCTC---A------------C--TGTCCCCCTCACTCCTGCGCCCATCCACCTTCGTCCT-----CCCGTCCCTTTCAG---AGGTGCCC-------ACGCTGCGGCCGGTGTCCCTCC-GG-----CCCACGCCGCCCCCTG---CACCCA------CCACTG +s fr1.chrUn 340429340 225 - 349519338 T--ACCCTCC-------CATCT---------CCACA---------------------------AAC---------------CCGAGTGC------------------------------------------------CCCCTTCA--------------------------------GCCGCCTC-----CTGGATCCAGCAGCCAGGGGT---------CCCCCCCAACACCACCACCGC---TCCCCCCACCACTCTCCCC---AGCGAGCAATCAGC--TGTGCCAGCTTCTCCAG------------TTTGTTCC-----AGCATCTCTGCCGC---CGGTGTCC-------TCACTGCGTCCCGTCTCGCAGC-GA--AAACACCCCCCTCCTCCTGAGTCATCTC------AAACTG +s danRer2.chr12 32346170 248 - 35164833 C-----CTGCAGAACTACACCA---------CTGCC---------------------------AGCTTACT----------CCAAAACT------ACACCACTGGCTTCTTGGGCCAGTCCTACACTTGACACTCCGTTCCTAGG--------------------------------AGGGGCAT-----TA-AATACAGCTGTA-----T---------CAACTCCTTCACCTTTACTCC---CTCCCTCATCATCGAACTT----------------T--TATCGTTCCATACCTTG------------TGAAGCAT-----GGGGCCGCCCTCAC---ATGCGCTCTGAGACGATGCTATGACCGCTGGTCTTGC-GG----------GCGGTGCCTTG--------C------TAACTG + +a score=-26806.0 +s hg17.chr10 80161467 27 - 135413628 ttg--tcctcctccctc------------tcctccttctat +s panTro1.chr8 82159011 26 - 138322177 ttg--tcctcctccctc------------tcctccttctA- +s baboon.ENr114_1 440088 27 - 584309 ttg--tcctcctccctc------------tcctccttctat +s rheMac1.SCAFFOLD70304 20460 27 - 66826 ttg--tcctcctccctc------------tcctccttctat +s marmoset.ENr114_1 479514 18 - 685353 ttg--tcctcctcc---------------------ttctat +s galago.ENr114_1 368630 27 - 502320 ctc--tcctccttccct------------gcctcctcatcc +s rn3.chr20 40769604 24 - 55296979 -----tcctcttcccct------------ttcttcccctaa +s mm6.chr10 74726587 24 + 130291745 -----tcctcttcccct------------ttctccccctaa +s rabbit.ENr114_16 116306 22 - 209963 -----tcctcttcctcc------------ttctatccct-- +s cow.ENr114_1 467998 25 - 523404 CAG--tcttcctccttc------------taatccacct-- +s canFam1.chr26 36578039 7 + 41009621 --------------------------------tccacct-- +s rfbat.ENr114_1 287819 25 - 353074 ctg--tcctcctccctg------------tcgtcctcct-- +s shrew.ENr114_9 25303 37 + 28685 ttg--tccttctccatcaccaccttccattcctcctcct-- +s armadillo.ENr114_1 393053 22 - 434329 -----tccacctcaacc------------tcttctactt-- +s monDom1.scaffold_13316 1880418 24 + 4912536 -----TCCTCTTACATC------------TTCTCCACTGAC +s platypus.ENr114_1 90796 16 - 121090 -----------tcaccc------------tcctcttcct-- +s galGal2.chr6 5979920 24 + 33893787 tAG--CACCCAACACCT------------TTCCCCTGC--- +s xenTro1.scaffold_94 660661 24 + 2448135 CTT--TCCAGCACCATC------------ACGTCCACC--- +s tetNig1.chr2 5926151 23 + 19247847 --gcctccttaatcccc------------tcctcctc---- +s fr1.chrUn 340429317 23 - 349519338 --TAGTCTGCCATCTAC------------CCCTCCTT---- +s danRer2.chr12 32346147 23 - 35164833 --CAGTCCGCCCCCACC------------CCCTCCTC---- + +a score=-30988.0 +s hg17.chr10 80161425 42 - 135413628 ---------------------t----------cctc---ttgctcctcctcctga------------------catttctc------ctttttctctttt +s panTro1.chr8 82158969 42 - 138322177 ---------------------t----------cctc---ttgctcctcctcctga------------------catttctc------ctttttctctttt +s baboon.ENr114_1 440046 42 - 584309 ---------------------t----------cctc---ttgctcctcctcctga------------------catttctc------ctttttctctttt +s rheMac1.SCAFFOLD70304 20418 42 - 66826 ---------------------t----------cctc---ttgctcctcctcctga------------------catttctc------ctttttctctttt +s marmoset.ENr114_1 479472 42 - 685353 ---------------------t----------cctc---ctgctcctcctcctga------------------cattcctc------ctttttctctttc +s galago.ENr114_1 368588 42 - 502320 ---------------------t----------cctc---atcctcctcctcctga------------------ccttacac------ctttttctctttc +s rn3.chr20 40769568 36 - 55296979 ---------------------G----------cctc---ttcctcaacctccta-----------------------ttgc------ctttactacttt- +s mm6.chr10 74726551 36 + 130291745 ---------------------g----------cctc---ttcctagacctccca-----------------------ttgc------ctttaccacttt- +s rabbit.ENr114_16 116276 30 - 209963 ---------------------t----------cctt---ttcctccac-----------------------------ttgt------ccttactcattt- +s cow.ENr114_1 467938 60 - 523404 ---------------------t----------cctc---ctcctcttccttctcctcctcTTACGCCTCATATCCTTACTC------CTTTGGCTGTGTC +s canFam1.chr26 36578021 18 + 41009621 ---------------------t----------cctc---ctcctcttcctcc------------------------------------------------ +s rfbat.ENr114_1 287780 39 - 353074 ---------------------c----------cctc---ctcctcctctggt---------------------ccttactc------cttttgctctttc +s shrew.ENr114_9 25249 54 + 28685 ---------------------t----------tctc---ctccgccacctcctcccccaccactgcc------tctttctt------cctttactcttcc +s armadillo.ENr114_1 393014 39 - 434329 ---------------------t----------cctc---cttttcctctttc---------------------ctgtcctc------ctcttcctcctcc +s monDom1.scaffold_13316 1880613 64 + 4912536 ---------------------ttcactcattccctc---atgctccccatccAGCCCTGGTGTTTGG------CATCGCTC------CATGCTCTCCCCT +s platypus.ENr114_1 90757 39 - 121090 ---------------------t----------cctt---ctcctccccatcc---------------------ccattctc------ttcctcctctccc +s galGal2.chr6 5979878 42 + 33893787 ---------------------a----------actc---tgcccctcgcttctgt------------------tccttctt------cttcatctcttcc +s xenTro1.scaffold_94 660613 48 + 2448135 ---------------------T----------CCTA---TGCCATCCCCCTCTGATAATTT------------TATGCCTC------CACCCCCACCTTT +s tetNig1.chr2 5926088 63 + 19247847 TCGTCGTCGTCAACCACGTCCC----------CCTT---AGTCAccacctcc---------------------cccccccccca---catctgctcctct +s fr1.chrUn 340429257 60 - 349519338 TCCTC---------CGCCTCCC----------CCTCCAGAACGGCCACCTCC---------------------CTCCTCCCCAAAAACATCCCCTCCTTA +s danRer2.chr12 32346107 40 - 35164833 --------------TACCTGCT----------CCAC---AACCACCACCACC---------------------GCCTCCAC------------CTCCCTC + +a score=209058.0 +s hg17.chr10 80161317 108 - 135413628 -AAGAAATATTTTT--------GAAAA---TTTTGCCCATCCACCAAACATCTC---TCCTTCTGCCTGtcc------ccttccccctcctcctcctatttctcctccttctcctcctcctgctcctgc +s panTro1.chr8 82158861 108 - 138322177 -AAGAAATATGTTT--------GAAAA---TTTTGCCCATCCACCAAACATCTC---TCCTTCTGCCTGtcc------ccttcctcctccttctcctatttctcctccttctcctcctcctgctcctgc +s baboon.ENr114_1 439941 105 - 584309 -AAGAAATATTTTT--------GAAAA---TTTTGCCCATCCACCAAACATCTC---TCCTTCTGCCTGtcc------cc---ctcctcctcctcctatttctcctccttctcctcctcctgctcctgc +s rheMac1.SCAFFOLD70304 20313 105 - 66826 -AAGAAATATTTTT--------GAAAA---TTTTGCCCATCCACCAAACATCTC---TCCTTCTGCCTGtcc------cc---ctcctcctcctcctatttctcctccttctcctcctcctgctcctgc +s marmoset.ENr114_1 479376 96 - 685353 -AAGAAATATTTTT--------GAAAA---TTTTTCCCATCCACCAAACATCTCCCCTCCTTCTGCCTGTCT------CC---------------CTATTTctcctcctcctcctccatctgctcctgc +s galago.ENr114_1 368531 57 - 502320 -AAAGAACAATTTT--------GAAAA---GTTTTCCCATC---------TCTc---tcctcctctctttcc------tc------------------------------------------ctcctcc +s rn3.chr20 40769508 60 - 55296979 -AAGGAACTCTTTT--------GAAAT---GGTTCCCCATCCACCCAGCATCTC---------TGCTCCCCT------CC------------------------------------------CACAGCT +s mm6.chr10 74726491 60 + 130291745 -AAGGAACTCTTTT--------GAGAT---CGCTCCCCATCCACCTAGCATCTC---------TGctcccct------cc------------------------------------------cacatcc +s rabbit.ENr114_16 116210 66 - 209963 -AAGGCGTGATTTC--------GAAAA---TCCTTCCCACTCACCATACGTtcc---cccttgtgcccaccc------ct------------------------------------------ctcttcc +s cow.ENr114_1 467866 72 - 523404 -AACAGACATTTTT--------GAAAA---TCTTCCCTGTCCACCAAAAACCTc---tcctccccctcctccttcttgtc------------------------------------------ctccccc +s canFam1.chr26 36577955 66 + 41009621 -AAGGAACATTTTC--------GAAAT---CCTTCCCAAACCACCAAACATCTc---tcctccacctgcccc------tc------------------------------------------ctcctcc +s rfbat.ENr114_1 287717 63 - 353074 -AAGGAACGTTTTC--------GAAAA---TCTCC---ATTCACCAAACATCTc---tcctcttcctcctcc------tc------------------------------------------ctcctcc +s shrew.ENr114_9 25183 66 + 28685 -AAGTAACATTTTT--------GAAAA---TATTCCCCATCCACCAAGCATCTA---TTCCTctcctccttc------tc------------------------------------------ctccttg +s armadillo.ENr114_1 392948 66 - 434329 -AAGGAACATTTTT--------GAAAA---TCTTCCCCATTCACCAAACATCCT---tcctcctcctcctat------tt------------------------------------------tccttac +s monDom1.scaffold_13316 1880517 96 + 4912536 -GGAGAAAATGATA--------GAGAA---TATTCCAGACCCCCCTAACAcccc---tccacctttccctcc------tc------------ctccccttccaccaccaccaccactgccacctcctgc +s platypus.ENr114_1 90667 90 - 121090 -AAAAAAATTGAAT--------GAAAA---TATTCCTGACCCCCCAAAAACTCC---TCCCCCAcctcctcc------tc------------------tttctctctctcctcttccttctcctcccct +s galGal2.chr6 5979770 108 + 33893787 -AGGAGAAGTTACA--------GAAAA---CATTCCAGACCCACCTAAAActcc---cccaccccctcctcc------tctactgcctcctccacctccatcccctcctcttttgccaccccatcctcc +s xenTro1.scaffold_94 660506 107 + 2448135 -AATGAACATGATCCGATGCTGGAAGACCCTATTCCAGATCCACCAAATATTCC---CCCTCCCCTTCCACC------AC------------TTCCCCATTCAGTATCCTGTTCACAGCTTCTTTTACC +s danRer2.chr12 32201614 96 - 35164833 CG-AGGTCAATGTG--------GAGAT---CATTCCAGACCCTCCTGATGTACC---TGCTCCACAAccacc------ac------------caccgcctccacctccctccagtccgcccccaccccc + +a score=1123317.0 +s hg17.chr10 80161020 297 - 135413628 TGAAGAGGCAAATTTGA------CAGAGAA-AG---------------------------AGGAAATAAGGCAAGGTGAA----------------------ACACTGATGATAG---------------------------AAGG---------A--------------ACAGAACAGTTGAAA------------------TC---TCT---------------------------------------------------------------------C-----TCTTCAGA-CTCTTCATT------------------TTGCT------------TTCCCAGGCCTCA---CTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATC------AGAACCTAATGTC------------ATCAGTTCTCCTGCTGAGT------GTTC------CTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTACATTCTTCA---CTCTCTAGGAGA--GAGACACCTATTTG-------TATGTTACC-TATT----GAAACCGA +s panTro1.chr8 82158564 297 - 138322177 TGAAGAGGCAAATTTGA------CAGAGAA-AG---------------------------AGGAAATAAGGCAAGGTGAC----------------------ACACTGATTATGA---------------------------AAGG---------A--------------AGAGAACAGTTGAAA------------------TC---TCT---------------------------------------------------------------------C-----TCTTCAGA-CTCTTCATT------------------TTGCT------------TTCCCAGGCCTCA---CTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATC------AGAACCTAATGTC------------ATCAGTTCTCCTGCTGAGT------GTTC------CTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTAAATTCTTCA---CTCTCTAGGAGA--GCGACACCTATTTG-------TATGTTACC-TGTT----GAAACCGA +s baboon.ENr114_1 439644 297 - 584309 TGAAGAGGCAAATTTGA------CAGAGAA-AG---------------------------AGGAAATAAGGCAAGGTGAA----------------------ACACTGATTATAA---------------------------AAGG---------A--------------ACAGAACAGTTGAAA------------------TC---TCT---------------------------------------------------------------------C-----TCTTCAGA-CTCTTCATT------------------TTGCT------------TTCCCAGGCCTCA---CTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATC------AGAACCTAATGTC------------ATCACTTCTCCTGCTGAGT------GTTC------CTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTAAATTCTTCA---CTCTCTAGGAGA--GAGACACCTATTTG-------TATGTTAAC-TGTT----GAAACTGA +s rheMac1.SCAFFOLD70304 20016 297 - 66826 TGAAGAGGCAAATTTGA------CAGAGAA-AG---------------------------AGGAAATAAGGCAAGGTGAA----------------------ACACTGATTATAA---------------------------AAGG---------A--------------ACAGAACAGTTGAAA------------------TC---TCT---------------------------------------------------------------------C-----TCTTCAGA-CTCTTCATT------------------TTGCT------------TTCCCAGGCCTCA---CTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATC------AGAACCTAATGTC------------ATCACTTCTCCTGCTGAGT------GTTC------CTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTAAATTCTTCA---CTCTCTAGGAGA--GAGACACCTATTTG-------TATGTTAAC-TGTT----GAAACTGA +s marmoset.ENr114_1 479079 297 - 685353 TGAAGAGGCAAATTTGA------CAGAGAA-AG---------------------------AGGAAATAAGGCAAGGTGAA----------------------ACACTGATTATAA---------------------------AAGG---------A--------------ACAGAACCATTGAAA------------------TC---TCT---------------------------------------------------------------------C-----GCTTCAGA-CTCTTCATT------------------TTGCT------------TTCCCAGGCCTCA---CTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATC------AGAACCTAATGTC------------ATCTCTTCTCCTGCTGAGT------GTTC------CTTGGAACTTTCTCCTT---TGAGGCCCTGTGTTTTAAATTCTTCA---CTCTCTAGGAGA--GAGACACCTATTTG-------TATGTTAGC-TGTT----GAAAATGA +s galago.ENr114_1 368240 291 - 502320 TGATGACGGAAATTTGA------CAGAGAA-AG---------------------------AGGAAAGAGGGCAAGGCGAA----------------------ACTCTTATCCTAA---------------------------AAGG---------G--------------TCAGAACAGTTGAAA------------------TC---TCT---------------------------------------------------------------------C-----TCTTCAGA-CTCCTCATT------------------TTGCT------------CTCTCAGGCCTCC---CTTCTCAGTCTCCACTTTGCCAACTGTTTCAAGGACTGTGGAACTAGAGTC------AGAACTCAGTGTC------------ATCACCTCTCCTGCTGACT------GTAC------CTTGGAACTTTCTCCT---------CCTTGCATTTTAAATTCTTCA---CTCCCTAAGAGA--GAGACGAGTGCTTG-------TATGTTAGC-TGTT----GAAACCAA +s rn3.chr20 40769211 297 - 55296979 CGAAGATGCCCGTGGGT------CAGAGAA-------------------------------AGAAGGGGGGCACAGAGAC----------------------ACCCTAATCGTAC---------------------------AGCA---------A--------------ACAGAGCAACTGAAA------------------TC---TCT---------------------------------------------------------------------G-----TCTTCGGG-CTCTTCTTT------------------TTCCT------------CCTCTTGGTCCCA---CTTTTCTTTCTCAACTCTACCAACAATTTCAAGAGCGGTAGAACTCGGGTC------AGAACCTGACGTT------------GTCACTTCTCCCGCTGACT------GCAC------CTTGGAACTTTCTCCTCCTCGGAGACCCCGCGTTTTAAACTCCCTA---GGCTCTAAGAGA--GAGACTCCCACTTG-------TGCCTCCGA-TACA----GAAACAAA +s mm6.chr10 74726194 297 + 130291745 TGAAGATGCCCACGAGT------CAGAGAA-------------------------------AGAAGGGGGACACAGAGAC----------------------ACCCTAATCGTCC---------------------------AGCA---------A--------------ACAGAGCAGCTGAAA------------------TC---TCT---------------------------------------------------------------------G-----TCTTCTGG-CTCTTCTTT------------------TTCCT------------CCTCTTGGTCTCA---CTTTTCTTTCTCAACTCTGCCAACGATTTCCAGAGCGGTGGAACTCGGGTC------GGAACCTAATGTG------------GTCACTTCTCCCGCTGACT------GCAC------CTTGGAACTTTCTCCTCCTCTGAGACCCCGTATTTTAAACTCCTTA---AGCTCTAAGAGA--GAGACTCCCACATG-------TGCATCAGA-TACA----GAACCAAA +s rabbit.ENr114_16 115912 298 - 209963 TGAATGTGCAGATCTGA------CCGAGAAGAG---------------------------AAGAAATACGGGATGGTGAG----------------------ACACTGATTCCAA---------------------------GAGA---------A--------------ACACAGCAGTTGAAA------------------TC---TCT---------------------------------------------------------------------A-----TCTTCAAC-CTCTTCATT------------------TTCCT------------CTCTTTGGCCTCA---CTTCTCATTCTCCACTTTGCCAACTGTTTCGAGAACGGTGGAACTCAAATC------AGAACCTGCTGTT------------ACCGCTTCTCCTGACGACT------GTTC------CTTGGAACTTTCTCCTC---TAAGGACTAGCACTTTAAAGGCTCCA---GTGTATGGGAAA--GAGACACCCACTTG-------TATGGTAGC-TGTT----GAAACTAA +s cow.ENr114_1 467569 297 - 523404 CGAAGATGCAGATGTAA------CAGAAAA-AG---------------------------AGGAAACAGGGGAAAGTGAA----------------------TCACCGACTATAA---------------------------AAGG---------A--------------ACGGAGCAGTTGCAG------------------TC---TCT---------------------------------------------------------------------A-----CCTTCAGA-CTCTTCGCT------------------TTCCT------------CTCCTTGGTCTCA---CTGCTCTCTCTCCACTTTGCCAACTGTTTCGAGGACTGTGGGACTCAAATC------AGAACCTAATGTG------------GTTGTTTCTCCTGCTGACT------GTTC------CTTGGAACTTTCTCCTT---CAATGCCTTGCATTTTAAATTCTGAG---TTCCTTAGCAGA--GAGACACCTACTTG-------TTTGATGAC-GTTT----GAAACCAA +s canFam1.chr26 36577658 297 + 41009621 TGGAGAATCCAGTGTGC------CCGAGAC-AG---------------------------GAGAAGCAAGGCCAGGCCAG----------------------CCCCTGCTCCCAC---------------------------GTGG---------A--------------GCACAGCATGTGGAA------------------TC---TCT---------------------------------------------------------------------G-----TCTTCAGA-CTCCTCATT------------------TCTCT------------CTCCTTCGTCTCA---CTCCTCCTACTCCACTTTGACAACTGTTTCGAGAACTGTGGAACTCCAGGC------AGAACCTGATGTC------------ATCATCTCTCCCGCGGACT------GTTC------TTTGGAACTTTCTCCTT---CAATGCCCTGCATTTTAAATTCCCCG---GTTTTTAGGAGA--GAGATGCCCACATG-------TCTGTTGAC-AGTT----GAAGCCGG +s rfbat.ENr114_1 287420 297 - 353074 TAAAGGTACAAGTTTAA------GAGAGAA-AG---------------------------AGGAAATAAGGCCAGGTGAA----------------------TCACCGATTATAC---------------------------AAGG---------A--------------ATGGAACAGTTGAAA------------------TC---TCT---------------------------------------------------------------------G-----TCTTCAGA-CTCTTCATT------------------TTCCT------------CTCCTTGGTCTCA---TTCCTCACTCTCTGTTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATC------AGAACCTAATGTT------------ATCGTTTCTCCTGCTGACT------GTTC------CTTGGAACTTTCTCCTT---CAATGCCTTGCATTTTAAATTCTCCA---CTTTTAAGGAGA--GAGACACACACTTG-------TACGTTGAC-TGTT----GAAACCAA +s shrew.ENr114_9 24889 294 + 28685 TGAAGAGATAGATTTAA------CAGAGAA-AG---------------------------AAGATA---GTCAAAATGAA----------------------TCAATGGTTATGC---------------------------CAGG---------A--------------TCAGAACAGTTGAAG------------------TC---TTT---------------------------------------------------------------------A-----TCTTCAGC-CTCTACATT------------------TTCCT------------CTTCCTGGTCTCA---TTCTTCATTTTCTACTCTGCCAACTGTTTCAAGAACTGTGGACCTCAAATC------ACAATCTAAGGTC------------GTTATTTCTCCTTCTGATT------GTTC------CTTGGGACTTTCTCCTA---CGATGCCTCGCATTTTAAATTCTCCA---CTCCTCAGGAAA--GAGGCACCAACTCA-------TATTTTAAC-TATT----GAAACGGA +s armadillo.ENr114_1 392651 297 - 434329 TAACAATGCAAATATAA------CAGAGAA-AG---------------------------AAGAAATAAAGCAAATTGAA----------------------TCACTGATTATAC---------------------------AAGA---------A--------------ACTACACAGTCGAAA------------------TC---TCT---------------------------------------------------------------------A-----TCTTCAGA-CTCTACGTT------------------TTCTT------------CTCCTTGGCTTCA---CTCCTCATTATCTGCTTTGCCAACTGTTTCAAGAATAGTGGAACTCAAATC------AGAACCTAATATC------------ATTATTTCTCATGCTGACC------GTTC------CTTAGAACTTTCTCCTT---CAATGTCTTGCATTTATAATTCTCCA---CTTTTTAAAAGA--AAGACACCCACGCA-------TATGATGAC-TGTT----GAAACCAA +s monDom1.scaffold_13316 1880163 354 + 4912536 TGAAGAGACAAAGTTGATAGTGGCAGAGAA-AGCCAGGCAGTTTAAAGGGCAACCTTTTCAGGAAATAAATCAAGG-GAA----------------------GCATTG-TGATGG---------------------------AAGA---------GCAACCTGGTCACCCACCCAAAAGATGCCA------------------CTAGAGCT---------------------------------------------------------------------A-----TCTACTGA-ACACTTGCT------------------TTCTT------------CTCCCTGGCACCAGTTCTCTTCTTTTCCTACTTTGCCACCTGTTTCAGGTGCTATTGAACTTGACAC------TGTGCCTCCAATC------------ATCATTTCCCATGCTGATG------CTCC------TCTTACATCTTCTCCAC---TGA---CTCAAAAGCCAACTTCTCCATCTCCTTTTTGGATATCAAAACACAGTCCTC-------AACATTATT-TGTCCCCCAAGACAAG +s platypus.ENr114_1 90322 345 - 121090 ---AGATTCAAAGTTAA------CGGTAAA-AG---------------------------AGAAAGCACGACAATTTGAACATCATGCTTTACAGGAAATGAACAATCATGAAAACAAAAGTGCATGTTCCCCAGCACCAGGAAGG---------G--------------AGAGTACAGTAAA-------------------------ACT---------------------------------------------------------------------G-----CATCCAGA-GTACTTCCT------------------TCCTT------------CTTGTCACTGCTC---TTCTTCATTCTCCTCTTCAAGACCTTTTCCAGAGACTATGGACCTTGGCCC------ACCTCCTTCAGTA------------GTCGTCTCTCACATTGACT------GTTC------TTTAGAAGTTTCTCCTC---CACCAAATCACAAACCAACACCTCCC---CCTCTTAGGATT--CAACAATCCGATTGCCACCACTAT-TTGGC-TATT----GAATCTGA +s galGal2.chr6 5979392 378 + 33893787 AAGTGGCCCCACGTTAA------CTGTAAA-AG---------------------------AGAAGGCAAGACAATTTGAG----------------------CAGCAGGCTTTGC---------------------------AGGA---------A--------------ATGAAGCAAGTGAAA------------------TC---TCCTGATGTCAAATCCACCCGTTCACCAACGCACAGCATCTGTTTGCAAGAAAGAGATAACACGCTAGAGCAG-----TCTCCTAA-AAGTGTGTT------------------TGCTT------------CTCCTTGCCTTCG---CTCTTCTCCTCTGTCCTCTCCAACACCTTGTGAAGTAGTTGAGCCGGAGCCCTCTGCGGTCCCCTCTGTA------------ATCATCACTCACCATGACT------ATCC------TGAAGAACTTTCTCCTC---CACCAACTCGCAAGCCAACTCCTCCG---TCTTTTAGGATA--AAGAAACCCGTTTGCCAAAG-TTTTCTAGC-TCCT----CAGACCAA +s xenTro1.scaffold_94 660160 344 + 2448135 TAACAAATTAAGTGTAA------AAGAGCA-GGCCAGACAGTTTGAACAAAATGCCTTGCAGGAAGTAAAGCAAGTCAAA------------------------GCTGAAAATAA---------------------------AGAACTGTATTCAG--------------TGAAAGATGTTGAGT------------------TT---TAT---------------------------------------------------------------------CAGGGTTCCACAAA-GTCTACATCACAAG-------------CCAGT------------ATCTCATGCCACAGATTTCCTCCATCTTCATCTCTCCAGCGTTTGTGTGA-----GGTTCCTGCAAC------TGACCCTTCCATCTTTCCATCAATCATTATTACTCCCTCAGACC------ACTG------TGATGACATTTCTCCTC---CACCAACTCG------AAAACCAACA---CCTCCTAGTGAA--AAGAAACAT-CTAG-------CACCCGGTC-AAGT----ATATCTAA +s fr1.chrUn 340428897 321 - 349519338 ---AGACACCAAGCTGT------CCGTCCG-TC---------------------------AGCAGGCCAAGCAGTTTGAG----------------------CAGAAGGTCATCC---------------------------AGGA---------T--------------CAAACCCTCAGGCAGAGCAGAGACTCCCCCAGTTC---TCT---------------------------------------------------------------------T-----CCATCC---ATCATTTTCAGGAACAGAAACAGTGACTCTGTAGTAGAGCTGCCCTCAGAAACCCTG---CTCTCCATCCTGGACCACAGCACG-------GCAACTGTGGGCAGGGACGC------CCCACCAGTGGTT------------GTCGTATCCCAGGGTGACGAAGCACGCCC------CCAGAGACCATCCCAGC---TTGATATCAGGAGGTTCAG--CTCCA---GT---------A--TCGGCAACTTCATG-------GCACTTCAA-CCTT----G------- +s danRer2.chr12 32201350 264 - 35164833 ---AGAGCCCAAATTGA------CTGTAAA-AG---------------------------AGCAGGCACGACAGTTTGAG----------------------CAGCAGGCCTTGC---------------------------AGGA---------C--------------GTAAAGTTGAGGCAAGGTCAGGACTCTCGTGGGTC---ACT---------------------------------------------------------------------C-----TCTTCCGAAATTATTCTC------------------TCTGT------------TTTTGAAACCCCA---C------------ACAACAGCAGA----------------------------------CCTCCAGCGATA------------ATCATTACTCAGAGTGACTCAACACCTCCGCCCAGTCATAAGCCCACTCCGC---CAGTGCTGCGGAAGTACA-----CCA---G----------A--CTGTCTTCTTATCC-------TGACTTAGAGTCTT----A------- + +a score=46139.0 +s hg17.chr10 80161003 17 - 135413628 AATCCATTGC------TT---AC----AAC +s panTro1.chr8 82158547 17 - 138322177 AATCCATTGC------TT---AC----AAC +s baboon.ENr114_1 439627 17 - 584309 AGTCCATTGC------TT---AC----AAC +s rheMac1.SCAFFOLD70304 19999 17 - 66826 AATCCATTGC------TT---AC----CAC +s marmoset.ENr114_1 479062 17 - 685353 AATCCATTGC------TT---AC----AAC +s galago.ENr114_1 368223 17 - 502320 AATCCCTTAC------CT---GC----AAC +s rn3.chr20 40769194 17 - 55296979 AACCTAATGG------TG---AC----AAC +s mm6.chr10 74726177 17 + 130291745 AACGTTCTGC------TG---GC----AAC +s rabbit.ENr114_16 115895 17 - 209963 AGTTCATCTC------TT---AC----AAC +s cow.ENr114_1 467552 17 - 523404 AGTCCCTTGC------TT---AC----AGT +s canFam1.chr26 36577641 17 + 41009621 AACCCCCTGC------CT---GC----AGC +s rfbat.ENr114_1 287403 17 - 353074 GATATCTTGC------TT---AC----ATC +s shrew.ENr114_9 24872 17 + 28685 AATCCCTTGT------TT---AC----TGC +s armadillo.ENr114_1 392634 17 - 434329 GATCCCTTGT------TT---AC----CAC +s monDom1.scaffold_13316 1880142 21 + 4912536 TAGCCTTTGC------CC---ATTTCAACC +s platypus.ENr114_1 90305 17 - 121090 AGTTCTCCAT------TT---AA----TAC +s galGal2.chr6 5979372 20 + 33893787 AGTCCACTAT------TTCAAAA----AAT +s xenTro1.scaffold_94 660137 23 + 2448135 AGGCCATTGGAGAATGTT---AA----AAC + +a score=245908.0 +s hg17.chr10 80160931 72 - 135413628 CAGTGGCAAGGCACCAGGCAGAAAGCTG-AAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGC +s panTro1.chr8 82158475 72 - 138322177 CAGTGGCAAGGCACCAGGCAGAAAGCTG-AAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGC +s baboon.ENr114_1 439555 72 - 584309 CAGTGGCAAGGCCCCAGGCAGAAAGCTG-AAAATGAAAACACTGGAATCTGTCCAAACAAAAGAGGTAGCAGC +s rheMac1.SCAFFOLD70304 19927 72 - 66826 CAGTGGCAAGGCACCAGGCAGAAAGCTG-AAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGC +s marmoset.ENr114_1 478990 72 - 685353 CAGTGGCAAGGCACCAGGCAGAAAGATG-AAAATGAAAACACTGGAGTCTGTACAATCAAAAGAGGTAGCAGC +s galago.ENr114_1 368151 72 - 502320 GCATGGCAAAGCACCAGGCAGGAAGCTG-AAAGTGGAGGTGCTGGAACCTATCCAAGCAGCAAAGGCAGCAGC +s rn3.chr20 40769122 72 - 55296979 GAGTGGCAGATCACCAGGCAGAGAGCTG-AATGCGAAAAAACCAGATGCCACCCAAGCCAGCAAGGTAGCAGC +s mm6.chr10 74726105 72 + 130291745 GAGTGGCAGATCACCAATCAGAGAGCTG-AATGCGAAAGCGCCAGATGCCACCCAAGCCAGAGAGGTAGCAGC +s cow.ENr114_1 467480 72 - 523404 CAGTGGCAAAGCAACAGGCAAAAAGCTG-AAAATGAAAGCACTGGAACCAATCCAAACGAAAGAGGTAACCGT +s canFam1.chr26 36577569 72 + 41009621 CCACGGAGGAGCCGCAGGCCGGAAGGTG-GGAAGGAAAGCCCTGGAACCCCTCCAAACCAGAGAGGTAGTAGG +s rfbat.ENr114_1 287331 72 - 353074 CAATGGCGAAACAATAGGCAGAAAGCTG-AAAATGAAATTCCTGGAACCTATCCAAACACAAGAGGTAGCAGG +s shrew.ENr114_9 24800 72 + 28685 CAATGGCAAAGCAATAAGCAAAACATAG-GGCATGAAAGTATGGGAACCTATTCAAACAAAGGAGGTAGCTGC +s armadillo.ENr114_1 392562 72 - 434329 CTATGGCGAAGCGACAGGCACAAAGCTG-AAAATGAAAGTACTGGACACTATCGAAACAAAAGAGGTAGCAGT +s monDom1.scaffold_13316 1880074 68 + 4912536 CAGTGGGAAAATGAACGCCTCCAAGCAG-AAGCTGAAATAACTGAATAC----CAGTCCAATATGGTGGCTGC +s platypus.ENr114_1 90233 72 - 121090 CAGGGGCAAAAGGAAAAATTCAGAACTG-AATTTGAAAGGAATGGAGGCCAGCAAAGTAAGGTGGATGAGTTT +s galGal2.chr6 5979300 72 + 33893787 CAGTGGCAACAGGAAAGACTCAAAGCAG-AGAATGAAGGAACTGAAAATCAGCATAGCAGAGTTGATATTAGC +s xenTro1.scaffold_94 660068 69 + 2448135 CAGGGCCAACATAAAAGG-ACACAGCAGCAGAGTGAACCGAGCGAAA---ATTCACACAAAACTGATTGCCCT +s fr1.chrUn 340428838 53 - 349519338 ----------------GCATCAGA---A-GCCAGGAAAAGGCTGCAGAGTTTCAATACACTTCAGCTAGGAGA +s danRer2.chr12 32201276 68 - 35164833 CAGCTGCTAAAGGCCAGCCTTAAGGACA-GCAAGGAGATGATTGATGGGTTT-GATGGACTTGGG---GATGA + +a score=569593.0 +s hg17.chr10 80160820 111 - 135413628 -TCTCTGAGGGGCCCAAGA---------GAAAAGATTCA----GAGGCTG----TGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGT--TCCAAATAGACCAGAGATCATAGATCTGCAG +s panTro1.chr8 82158364 111 - 138322177 -TTCCTGAGGGGCCCAAGA---------GAAAAGATTCA----GAGGCTG----TGCAGTCTGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGT--TCCAAATAGACCAGAGATCATAGATCTGCAG +s baboon.ENr114_1 439444 111 - 584309 -TCTCTGAGGGGCCCAAGA---------GAAAAGATACA----GAGGCTG----TGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGT--TCCAAATAGACCAGAGATCATAGATCTGCAG +s rheMac1.SCAFFOLD70304 19816 111 - 66826 -TCTCTGAGGGGCCCAAGA---------GAAAAGATACA----GAGGCTG----TGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGT--TCCAAATAGACCAGAGATCATAGATCTGCAG +s marmoset.ENr114_1 478879 111 - 685353 -TCTCTGAGGGGCCCAAGA---------GAAAAGATTCA----GAGGCTC----TGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGAGGAGGAAAGT--TCCAAATAGACCAGAGATCATAAATCTTCAG +s galago.ENr114_1 368040 111 - 502320 -TCTCTGAGGGGCCCAAGA---------GAAAAGATTCA----GAGGACG----TGGAGTCAGCCGGTCAGTTTCCCTAAGAGACTGATGAGAAAAGT--TTCAAATAGGCCAGAAATCATAGATCTGCAA +s rn3.chr20 40769011 111 - 55296979 -TCCCTGAGGGGCCCAAGA---------GAAAAGATCCA----GAGGGTG----TGGAATCAGTCTGTGAGGTTTCCTAGGCGGCTGATGTGGAAAAC--TCCAAACAGACCAGAGACCATAGACCTAGTG +s mm6.chr10 74725994 111 + 130291745 -TCTCTGAGGGGCCCAAGA---------GAAAAGATCCA----GAGGGTG----TGGAATCAGTCTGTGAGCTTTCCTAGGCGGCTCATGTGGAAAGC--CCCAAACAGGCCAGAGACCATAGACCTGGTG +s rabbit.ENr114_16 115683 111 - 209963 -TCTCTGAGGGGTCCTCGA---------GAAAAAATTAA----GAGGATG----TGGAAGCAGCCAGTCAGCTTACCTAAGAGACTGATGGGGAAGGT--TCCAAAGAGACCAGAAACCATTGATCTAGTG +s cow.ENr114_1 467369 111 - 523404 -TTTCTGAGGGGCCCAAGG---------GAAAAGATTCA----GAGGATG----TGGAATCGCCCAACCTGCTTACCTAGGAGACCAATGTGGGAACT--TCCTGATAGATCAGAAACCATAGCTCTAAAG +s canFam1.chr26 36577458 111 + 41009621 -TCCCTGAGGGGCCCAAGG---------GAAATGTTTCA----GAGGATA----TGGCATCAGCCAGTGTGCTTCCCTCAGAGACCAGTGTGGGAACT--TCCCAGAAGGCCAGAAACCCTAGAGCTGGAG +s rfbat.ENr114_1 287220 111 - 353074 -CCTCTGAGGGGCCCAAGA---------GAAAGCATTCA----GAAGATG----TGGAATCAGACAATCTGCTTACCTAGGAGACCAATATGGGAACT--TCCCAATAGACCAGAAACCATAGAACTGGAG +s shrew.ENr114_9 24689 111 + 28685 -TCTCTCAGGGCCCCAAGG---------GAAAAGATACA----GAAGATG----TGGAATCATTCATTCTGTTTCTCTGGGGGATCCAGGTGGGAGTT--TCCAAGCAGATCAGATACCATAGATCTGGAA +s armadillo.ENr114_1 392451 111 - 434329 -TCGCTGAAGAGCACCCGA---------GAAAACACACA----AAGGACA----CAGAATCAGCCAGTTTGCTTACCCATGAGACCAATGTGGGAAGT--TCCAAACAGACAAGAAATCATAAATCCGGAG +s monDom1.scaffold_13316 1879963 111 + 4912536 -TGTCGGAAATACCCAGCA---------GAAAGCACTCA----TCGGGCA----TGGACTCTACCAACCAGCTTCACTCGGAGGCAGATGTATGAGGT--TCTGAATAGACCAGTCATTATGGATCCTATC +s platypus.ENr114_1 90122 111 - 121090 -GCTCTAAGGTGTCCTTCA---------GAAAACATTCA----ACGGGCT----TGGACTTTGCCAAAGTGTTTTACTAGGAGACAAGTCTATGAAGT--TTTAAGCAGGCCAGTAATCCTAGATCCATTC +s galGal2.chr6 5979201 99 + 33893787 -TCTTTGGGAGGC---------------------AGTCA----CCGTGCA----TGGACAGTACCAGCTCACGTTACTAAGAGGCACGCGCCTGGTTC--TCTGAGCAGGCCGGTTATCATGGACCCTGTT +s xenTro1.scaffold_94 659948 120 + 2448135 -TCTCTCAAAGATTCATTGTTAAACTCCGAGGGCATTCA----TCGTGCT----TGGACTCTGCCAACGTGCTTCTCTAAAAGGCACGCTTATGATAT--CCTTAACAGTCCTGTTATAATGGACCCGATC +s fr1.chrUn 340428753 76 - 349519338 ---ATCAGTGCCTGCTCGC---------------ATTCA----CAG--------TGGAC------TGCCGGGTTGCGAGGG-------------------GCCAAGGAGGCAAGCTCTTATGGACCCAGAC +s danRer2.chr12 32201153 111 - 35164833 TCCATTATGGGATTCCCGA---------------ATTCAGGCTCAGGACATTCCTGGACATTACCTTCTCGGTTGCACAAGTGG-----GACGAATCTCAGCGGAGTAGGAGGGTGGTGATGGATCCAGTT + +a score=197865.0 +s hg17.chr10 80160757 63 - 135413628 GACATTTCACAGAGAA---CA---GATTTTGTAGAC-CCA----------------TTTTCACCCAAAATACAAGCCAAGAGTAAG +s baboon.ENr114_1 439381 63 - 584309 GACATTTCCCTGAGAA---CA---GATTTTGTAGAC-CCA----------------TTTTTACCCAAAATACAAGCCAAGAGTAAG +s rheMac1.SCAFFOLD70304 19753 63 - 66826 GACATTTCCCTGAGAA---CA---GATTTTGTAGAC-CCA----------------TTTTTACCCAAAATACAAGCCAAGAGTAAG +s marmoset.ENr114_1 478816 63 - 685353 GACATGTCATTGAGAA---CA---GATTTTGCAGAC-CCA----------------TTTTTACCCATAACACAAGCCAAGAGTAAG +s galago.ENr114_1 367977 63 - 502320 GGCTTTTCGCTGAGAA---CA---GATTTTGCGGAC-CCA----------------TTTTTACCCAAAACACAAGCCAAGAGTGAG +s rn3.chr20 40768948 63 - 55296979 GACCTTCAGCCTGGAA---CA---GAGTTTGGAGAG-CTA----------------TTTGTACCCAGAACACAAGTTAAGAGTCAG +s mm6.chr10 74725931 63 + 130291745 GACCTTCAGCCACGAA---CA---GATTTTGAAGAG-CTG----------------TTGGCACCCAGAACACAAGTTAAGAGTCAG +s rabbit.ENr114_16 115620 63 - 209963 AACTTTCCCATGAGAA---CA---GAAGTGGTAAAC-CCA----------------TTTTTACCCAGAACCCATGTCAAGAGTCAG +s cow.ENr114_1 467306 63 - 523404 GACTTTTTACTAAGAA---CA---GATTTTGTTAAG-TCA----------------TTTTTACCCAAAACACAAGCCAAGAATGAG +s canFam1.chr26 36577395 63 + 41009621 GACTTTTTACTAAGAA---CA---GATTTTATAGAC-TCA----------------TTTTTGCCCAAAACACAAGCCAGGAGTAAG +s rfbat.ENr114_1 287157 63 - 353074 GACTTTTCACTGAGAA---CA---GATTCTGTAGGG-TCA----------------TTTTTACCCATCACTCAAGCCAAGAAAGAC +s shrew.ENr114_9 24626 63 + 28685 GAGTTTTCACCAAGAA---CT---GACTTTGCAGAC-TCA----------------TTTTTATCCAAAACACAAGTAAAGAATGAT +s armadillo.ENr114_1 392388 63 - 434329 AATTTTTCTCTAAGAA---CA---GATTTTCTATGC-CCA----------------TTTTTATCTAAAACACAAGCCAAAATTGAG +s monDom1.scaffold_13316 1879897 66 + 4912536 GGATTTCCATGGAGAAAACCA---GGCTTACTAGAC-AAG----------------CTCTCCCCTCGAAGGCTAGCTAAGAAAGGT +s platypus.ENr114_1 90056 66 - 121090 GGCTATTTATGGAGAAATACA---AGCTTATTAGAC-AAG----------------TTTTCACCTAGAAGACTAGCCAAGAAAGAG +s galGal2.chr6 5979132 66 + 33893787 GGGTTACTGCGGAAAA---GAAGCGATGCCCTAGAT-ACT----------------CTTTCTCCTATGCAATTAGTCTTGAGAGAT +s xenTro1.scaffold_94 659901 46 + 2448135 -AGCTAGCGTGGAGAAG--TA---GATTT----------G----------------CCCTTG--------GCAAACCAGGAAGAAA +s fr1.chrUn 340428691 62 - 349519338 --------------GG---CT---TGCCTGAAAAGCGATGGACCGCCTCCCCTTCCTATTCACCCGGGTCGGGGGGGTTCAG---- +s danRer2.chr12 32201104 49 - 35164833 --------------GA---GT---TACCTCTTAGAC-ATG----------------TATTCACCCAGTATGAGAGGTCTGAGTAAG + +a score=1184117.0 +s hg17.chr10 80160588 169 - 135413628 CTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAGAGCAACAAACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAAGTGCCCATAATCCCCTTTATAAGGAAAACATAAGTCAA-GTA---------------TCAACAAATTCA +s panTro1.chr8 82158094 169 - 138322177 CTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAGAGCAACAAACTGAAGGCTGCAAGAAAATTCACATTTCTATCTGATGAAGATGACTTAAGTGCCCATAATCCCCTTTATAAGGAAAACATAAGTCAA-GTA---------------TCAACAAATTCA +s baboon.ENr114_1 439212 169 - 584309 CTTTTCTTCCAATACTATTGAGGCTCACAAGGCAGCTCATGTAGACGGATCACTTAAGAGCAACAAACCGAAGTCTGCAAGAACATTCACATTTCTATCTGATGAGGATGCCTTAAGTGCCCATAATCCCCTTTATCAGGAAAACATAAGTCAA-GTA---------------TCAACAAATTCA +s rheMac1.SCAFFOLD70304 19584 169 - 66826 CTTTTCTTCCAATACTATTGAGGCTCACAAGGCAGCTCATGTAGACGGATCACTTAAGAGCAACAAACCGAAGTCTGCAAGAACATTCACATTTCTATCTGATGAGGATGCCTTAAGTGCCCATAATCCCCTTTATCGGGAAAACATAAGTCAA-GTA---------------TCAACAAATTCA +s marmoset.ENr114_1 478647 169 - 685353 CTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGATGGATCACTTAAGAGCAACAATCCGAAGTCTGCAAGAAAATTAACATTTCTATCTGATGAGGATGCCTTAAGTGCCCATAATCCCCTTTATAAAGAAAACATAAGTCAA-GTA---------------TCAACAAATCCA +s galago.ENr114_1 367808 169 - 502320 CTTTTCTGCCAATCCTATTGAGGCTCCCAAGCCAGCTCAGATAGACGAATCACTTAAGAACAACCAACCAAAGTCTACAAGAAAATTCACATTTCCATCTGATGAGGAAATCTTACGTACCCATAATCTCCTTTATAATGAAAATGTAGACCAA-AGA---------------TCAAGAAATTCA +s rn3.chr20 40768782 166 - 55296979 CTTTTCCTCCAGTACCACTGAGTCTCATGAGCCAGCTCATGTAGAGGGACCACTT---GACAACCAAGCTAACCCAGCAAGGACGTTCTCATTTCTTCCAGATGAGGATGACTTAAGTACCCATAACCCCCTTTATATGGAAAGTATAGGTCAA-AGG---------------TCAACAAATTCC +s mm6.chr10 74725762 169 + 130291745 CTTTTCCTCCAGTACCACTGAGTCTCATGAGCCAGCTCATGTAGAGGGACCACTTAAGGAGAGCCAGCCTAACCCAGCAAGGACGTTCTCATTTGTTCCTGATGAGGATAACTTAAGTACCCATAATCCCCTTTACATGGAAAGTATAGGTCAA-AGG---------------TCAACAAACTCA +s rabbit.ENr114_16 115451 169 - 209963 CATTGCTTCCAATACTATTGAGGCTCAAAGGACACCTCATATATATGGATCACTTGAGAACAGCCAGCGGGAGTCTACAAGGAAATTCTCATGTCTATCTCAAGAAGACAGCTTAAGTACCCATAATTCTCTTTATAAGGAACACATAGGTCAA-AGA---------------CCAACAAATTCC +s cow.ENr114_1 467138 168 - 523404 -TTTTCTTCCCGCACTGTTGAGGCTCACAAGCAGACTCACGTAGATGGATCTCTTAAGAACAGCTGGCCCAGGTCTGCAAGAGATTTCACACTGATGTCTGGTGAGGATGCCTTAAATGCCCACAGTACCATTTACAAGGAATACACAGATCAA-AGA---------------TCAACAAATTCA +s canFam1.chr26 36577226 169 + 41009621 TTTTCCTTCCAGCACTATTGAGGCTCACAAGCAGGCTCATGTAGATGGATCCCTTAGGAACAACCAGCCCAAGTCAGCAAGGAAGTTCACACTGATGTCTGAGGAGGACGCCTTCAGTCTCCACAGTACTCTTTATAAGGAAGCTGTAGATCCA-AGA---------------CCAACAAACTCC +s rfbat.ENr114_1 286988 169 - 353074 CTTTTCTTCCAATCCTACTGAGGCTCACAAGCAGGCTTATATAGATGGATCCCTTAAGAACAACCAGCCCGAGTCTGCAAGAAAATTCACATTGGTATCTGATGAAGATGCCTTAAGTACTCATAGTGCCCTTTATAAGGAAAATATAGATCAA-AGA---------------TCAACAAAATTG +s shrew.ENr114_9 24457 169 + 28685 CTTTTCTCCTAAAACTATGGAGACTCACAATCAGGCCCATATAGACGGAGCACTTAAGAACAGCCAGTCCAAGTCTGCAAGAAACTTCACAGTGCTCCCTGCTGAGGATGATCTCAGGAGTCAGAATAAACTTTACCAGGAAAATACAGATGTG-AGA---------------CCAATGACTTTG +s armadillo.ENr114_1 392219 169 - 434329 TTTTCCTTCTTGTACTATTGAGGCTCACAAGCAGACTCACATAGACAAATCACTTAAGAACAACCAGCCCACGTCTCCAAGAAAATTCAAATTTCTTTCTGATGAAGACTCCTTAAGTACCCACAATCCCCTTTATATGGAAAATATAAGTCAA-GGA---------------TCAATAAATTCG +s monDom1.scaffold_13316 1879728 169 + 4912536 CGTAGCTTCCCGGGCAATTGAGGCACACAAGCAGGCTCGGAAAACTGGATCACTCAGGAATAACCTACCCAAGTCTGCAAGTAACATCACACTTTTGTCTGATGATAACCCCTTAACTACCCACAACCCTCTATATGTGGAAGGGGGAGGTCCA-AGT---------------TCAACAATCCCG +s platypus.ENr114_1 89887 169 - 121090 CTTTGCTTCCCGTGCTATTGAGGCTCACAAGCAGTCTCATGTCAATGGATCAGTCAAGAATAATCTACCCAAATCTGCAAGTAACATCACAATTCTGTCTGATGATAACCCATTAATTATCGAGAATCCTCTTTATGTGGAAGGTATAGGTCAA-GGG---------------TCTACAGGTGCT +s galGal2.chr6 5978963 169 + 33893787 CTTTGCTTCCCGTGCTATTGAGGCTCACAAGCAATCTAATATCAATGGATCATTGAACAATAACCTCCCCAAATCTTCAAGTAACATTACTTTCTTATCTGACGAGAACCCACTAACTACTCAAAACCCACTGTATGTGGAAGGTGTCACTCAA-AGT---------------CCTGCTGCTGCT +s xenTro1.scaffold_94 659731 170 + 2448135 TTTGGCATCACGTGCAATCGAAGCCCACAAGCTTTCTGGTCCCAGTGGATATCTAAACAATAAACTTCCCAAGTCGGCCAGTAACATTACCTTTCTCTCTGACACCAATCCACTCACAACTCAAAACCCATTGTACATTGAAGGCTCAGGTCAATGTA---------------ATGATAGCATTG +s fr1.chrUn 340428522 169 - 349519338 ATTCGCCTGTCGCGCCATCACAGCCCGCAG------------CAACGGAGCGCTGCAGGTTAATTTGCCCAGGTCGGAAAGCAACGTGACGTTCCTTTCCGACTGCAACCCACTCACCACTCGCAACCCCCTCTA---TGATGACAGCAGTCCC-AGCAGTCCTGATGTCTTTGCACAGAGGCGC +s danRer2.chr12 32200927 177 - 35164833 ATTCGCTTCCCGTGCTATCACTGCTCACAAGCTGTCCACCGCCAACGGAATCCTGCTCAACAACTTTCCCAAGTCGGAGAGCAACATTACCTTTCTTTCAGATGACAACCCACTTACTACAACCAACCCCCTGTACCGTGATGATGTCACTCTT-GGCAGCCCTGA-------GCACCAAAATCG + +a score=509847.0 +s hg17.chr10 80160527 61 - 135413628 -------AACAAAG-CAGGGGAAATAACTCAGTCTCAGAAGACAGGAAACATCAACAAGTTGTGATGCC +s panTro1.chr8 82158033 61 - 138322177 -------AACAAAG-CAGGGGAAATAACTCAGTCTCAGAAGACAGGAAACATCAACAAGTTGTGATGCC +s baboon.ENr114_1 439154 58 - 584309 -------AACAAAG-CAGGGGAAATCACTCAGTCTCAGAAGACAGCAAACATCAA---GTTGTGATGCC +s rheMac1.SCAFFOLD70304 19523 61 - 66826 -------AACAAAG-CAGGGGAAATCACTCAGTCTCAGAAGACAGCAAACATCAACAAGTTGTGATGCC +s marmoset.ENr114_1 478586 61 - 685353 -------AACAAAG-CAGGGGAAATAACTCAGTCTCAGAAGACAGGAAGCATCAACAAGTTGTGATGCC +s galago.ENr114_1 367747 61 - 502320 -------AACAAAG-CAGGGGAAATAACTCAGACTCAGAAGACAGGAAACCTCAGGAAGTTGTGCTGCC +s rn3.chr20 40768721 61 - 55296979 -------AACAAAG-CAGGGGAAATAACCCAGTCCCGGAAGACAGGAGCAGTCATCGTGACGGGATGGC +s mm6.chr10 74725701 61 + 130291745 -------AACAAAG-CAGGGGAAATAACTCAGTCCCAGAAGACAGGAGCAGTCATCGCGATGGGATGGC +s rabbit.ENr114_16 115390 61 - 209963 -------AACAAAG-CAGGGGAAATAACTCAGTCTCAGAAGACAGGAGACCTCACCAAGTTGTGATGCC +s cow.ENr114_1 467088 50 - 523404 -------AACAAAG-CAGGGAAAATAAATCAGTCTCAGAAGACAGGAAACATCAGCGC----------- +s canFam1.chr26 36577165 61 + 41009621 -------AACAAAG-CAGGGGAGATAAGTCAGTCTCAGAAGACAGGAAAAGTCCACACAGTGTGATGCC +s rfbat.ENr114_1 286927 61 - 353074 -------AACAAAG-CAGGGGAAATAAGTCAGTTCCAGAAGACAGGAAACATCAGCACGTTGTGATGCC +s shrew.ENr114_9 24396 61 + 28685 -------AACAAAG-CAGGGGAAATAAGTCAGTCTCAGAAGACAGGAAACATCAACACACTATGATGCC +s armadillo.ENr114_1 392158 61 - 434329 -------AACAAAG-CAGGGGAAATAAGTCTGTCTCAGAAGACAAGAAACATCAGCGAGTTGTGACACC +s monDom1.scaffold_13316 1879667 61 + 4912536 -------AACAAAG-CAGGGGAAACAAATCAGTCTTAGAAGAAGGAGAACGTCAAAGAGTTATAAGCCA +s platypus.ENr114_1 89826 61 - 121090 -------AACAAAG-CAGGGGAAAAAAGTCATTCTTAGAAGAAGGAGAACGTCAAAGAGTCATAAGCCA +s galGal2.chr6 5978902 61 + 33893787 -------AACAAAG-CAGGGGAAAAAAGTCAGTCTTAGAAGAAGGAGATCGGCAGAGAGTTATAAGCAG +s xenTro1.scaffold_94 659670 61 + 2448135 -------ATCAAAG-CAGGGGAAAAAAGTCAGTTTTGCAAGAAGGCGACCGGCAAAGACTGATAAGTAA +s tetNig1.chr17 6643879 68 + 11214114 CACTTTTACTGGGG-CAGGGCTAAAAAGTCTGTCATCGAAGAGGCAGAGCGCCAAAGGCTTCTTAGCAC +s fr1.chrUn 340428454 68 - 349519338 CTCTTTTACTGTGG-CAGGGCTAAAAAGTCTGTCATTGAAGAGGCAGAGCGCCAACGGCTCCTTAGCAC +s danRer2.chr12 32200858 69 - 35164833 CACACTTGCTGAAATCAGGACTAAGAGGTGTGTTCTGAAGGATGGTGATCGGCAGCGTCTCATTAGCTC + +a score=706447.0 +s hg17.chr10 80160504 23 - 135413628 T----------------CTTTT-CCTTCTCTACCATTTTC +s panTro1.chr8 82158010 23 - 138322177 T----------------ATTTT-CCTTCTCTACCATTTTC +s baboon.ENr114_1 439131 23 - 584309 T----------------CTTTT-CCTTCTCTGCCATTTTC +s rheMac1.SCAFFOLD70304 19500 23 - 66826 T----------------CTTTT-CCTTCTCTACCATTTTC +s marmoset.ENr114_1 478563 23 - 685353 T----------------CTTTT-CCTTCTCTACCATTTTC +s galago.ENr114_1 367724 23 - 502320 T----------------CTTTT-CCTTCTCTACCATTTTC +s rn3.chr20 40768698 23 - 55296979 T----------------CTTTT-CCTTCTCTACCATTTTG +s mm6.chr10 74725678 23 + 130291745 T----------------CTTTT-CCTTCTCTACCATTTTG +s rabbit.ENr114_16 115367 23 - 209963 T----------------CTTTT-CCTTCTCTACCATTTTC +s cow.ENr114_1 467065 23 - 523404 T----------------CTTTT-CCTTCTCTACCATTTCC +s canFam1.chr26 36577142 23 + 41009621 T----------------CTTTT-CCTTCTCTACCATTTCC +s rfbat.ENr114_1 286904 23 - 353074 T----------------CTTTT-CCTTCTCTACCATTTCC +s shrew.ENr114_9 24373 23 + 28685 T----------------CTTTT-CCTTCTCTACCATTTCC +s armadillo.ENr114_1 392135 23 - 434329 T----------------CTTTT-TCTTCTCTACCATTTTC +s tenrec.ENr114_9 963 24 + 8943 T----------------CTTTTCCCTTCTCTACCACTTTC +s monDom1.scaffold_13316 1879644 23 + 4912536 T----------------CTTTT-CCTTCTGTACCATTTCC +s platypus.ENr114_1 89803 23 - 121090 T----------------CTTTT-TCTTCTCTACCATTTCC +s galGal2.chr6 5978879 23 + 33893787 T----------------CTTTT-TCTTCTCTACCATTTCC +s xenTro1.scaffold_94 659647 23 + 2448135 T----------------CTTTT-TCTTCTCTATCATTTTC +s tetNig1.chr17 6643841 38 + 11214114 GAGTTTTCCTTTTCCTTTTCTT-TCTTCTTCTTCACCTC- +s fr1.chrUn 340428432 22 - 349519338 G----------------TTTTT-TCTTCTTCTTCACCTC- +s danRer2.chr12 32200840 18 - 35164833 T----------------TCATC-TTTATCTCTT----TC- + +a score=1227436.0 +s hg17.chr11 18327883 94 - 134452384 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATAT--GTAA +s panTro1.chr9 18516885 94 - 136640551 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATAT--GTAA +s baboon.ENm003_1 250730 94 - 625247 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATAT--GTAA +s rheMac1.SCAFFOLD85336 23857 94 - 72861 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATAT--GTAA +s marmoset.ENm003_1 430652 94 - 718711 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAAGCAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATAT--GTAA +s galago.ENm003_1 444225 94 - 721696 ATCCAATGGATTTGAACAAAAGCGCTTTGCCAGACTTGCCAGCAAGAAGGCAGTGGAGGAACTTGCCTACAAATGGAGTGTGGAAGACAT--GTAA +s rn3.chr8 49295396 94 + 129061546 ATCCAATGGCTTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAAGCTGTGGAGGAGCTTGCCTACAAGTGGAGTGTTGAGGACAT--GTGA +s mm6.chr9 46311748 94 + 124135709 ATCCAATGGCTTTGAACAGAAGCGCTTTGCCAGGCTCGCCAGCAAGAAGGCTGTGGAGGAGCTTGCCTACAAGTGGAGTGTGGAGGATAT--GTGA +s rabbit.ENm003_12 344 94 - 63772 ATCCAATGGATTTGAACAGAAGCGCTTCGCCAGGCTTGCCAGCAAGAAGGCAGTGGAAGAGCTCGCCTACAAGTGGAGCGTTGAGGATAT--GTGA +s cow.ENm003_1 430704 94 - 607368 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCGGTGGAGGAACTTGCCTACAAGTGGAGTGTTGAGGATAT--GTAA +s canFam1.chr5 19796448 94 + 92064832 ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCGGTGGAGGAACTTGCCTACAAGTGGAGTGTTGAGGATAT--GTAA +s rfbat.ENm003_1 241700 94 - 387831 GTCCAATGGATTTGAACAGAAGCGCTTTTCCAGGCTTGCCAGCAAGAAGGCGGTGGAGGAACTTGCCTACAAGTGGAGTGTTGAGGATAT--GTAA +s shrew.ENm003_8 4525 94 + 9365 ATCCAACGGGTTCGAGCAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCGATCGAGGAAATGGCTTATAAGTGGAGTGTGGAGGATAT--GTAA +s elephant.ENm003_1 394462 94 - 658450 ATCTAATGGATTTGAGCAGAAGCGCTTTGCCAGACTTGCCAGCAAAAAGGCAGTGGAGGAACTTGCCTACAAGTGGAGTGTTGAGGATAT--GTAA +s monDom1.scaffold_14981 361474 94 + 1219285 GTCCAATGGCTTTGAGGAGAAGCGTTTTTCCAGAATTGCCAGCAAGAAAGCCGTTGAAGAACTTGCCTATAAATGGAGTGTTGAGGATAT--GTAG +s galGal2.chr24 1135433 96 - 5910111 GTCCAATGGATTTGAGCAGCAGTTCTTTGCCAGGATGGCCAACAAGAAGGCAGCTCAGGAGTTTGCATACAAGTGGAGCATTGAAGACTTTCGCAA +s xenTro1.scaffold_18 1560255 94 + 3986068 GTCCAATGGATTTGAGAAGCAATTCTTTGCTAGGATGGCAGAAAAGACAGCTGTACAGGAGGAAGCATACAAGTGGAGTGTAGAAGATAT--GTGA +s tetNig1.chr7 3695771 94 + 11099225 ATCAAATGGTTTTGAGAAGAAACGCTATGAGAGGATGGCAGATAAAAGAGCTGCTCAGGAGGCAGCCTACAAGTGGAGTGTAGAAGATAT--GTAA +s fr1.chrUn 143036024 94 - 349519338 GTCAAATGGTTTTGAGAAGAAACGCTATGAGAGAATGGCAGATAAAAGAGCTGCTCAGGAGGCAGCCTATAAGTGGAGTGTAGAAGATAT--GTGA +s danRer2.chr21 25799084 94 - 40848751 GTCCAACGGTTTTGAGCAGAAGCGATACTCCAGAATGGCCGATAACAAAGCTGTCCAAGAGATGGCGTACAAGTGGAGTGTTGAAGACAT--GTAG + +a score=1346472.0 +s hg17.chr11 116206508 45 + 134452384 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTG +s panTro1.chr9 118206938 45 + 136640551 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTG +s rheMac1.SCAFFOLD60240 11058 45 - 98479 ATGCAGCCCCGGGTACTCCTTGTTGCTGCCCTGCTGTCACTCCTG +s marmoset.ENm003_1 365379 45 + 718711 ATGCAGCCCCGGGTACTCCTTGTTACTGCCTTCCTGGCACTCCTG +s galago.ENm003_1 352409 45 + 721696 ATGCAGTCCCGGGTGGTCCTCGCTGTCGCCCTGGTGGCACTACTG +s mm6.chr9 77887743 45 - 124135709 ATGCAGCCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTG +s cow.ENm003_1 257582 45 + 607368 ATGCAGCCCCGGCTGCTCCTTCTTGCTGCCTTCCTGGCGCTCCTG +s canFam1.chr5 72342544 45 - 92064832 ATGCAGCCCCGGGTCCTCCTCGTCGCTGCCCTCCTGGCGCTCCTG +s armadillo.ENm003_1 388688 45 + 560540 ATGCAGCCCCGGGTGCTCCTCGCTGCTGCCCTCCTGGCGCTCCTG +s elephant.ENm003_1 369463 45 + 658450 ATGCAGAGCAGGGTCCTTCTCGTTGCTGCCCTCCTGGCGCTCTTG +s monDom1.scaffold_14981 971779 45 - 1219285 ATGCAGCCCCGAGTTTTCCTTGTTGCTGTGTTCCTGACCCTACTG + +a score=106697.0 +s hg17.chr11 116206553 10 + 134452384 GCCTCTGCCC +s panTro1.chr9 118206983 10 + 136640551 GCCTCTGCCC +s rheMac1.SCAFFOLD60240 11103 10 - 98479 GCCTCTGCCA +s marmoset.ENm003_1 365424 10 + 718711 GCCTCTGCCC +s galago.ENm003_1 352454 10 + 721696 GCCTCTGCCC +s mm6.chr9 77887788 10 - 124135709 GCATCTGCCC +s cow.ENm003_1 257627 10 + 607368 GTCTTGCCTG +s canFam1.chr5 72342589 10 - 92064832 GCCTCCGCCC +s armadillo.ENm003_1 388733 10 + 560540 GCCTCCGCCC +s elephant.ENm003_1 369508 10 + 658450 GCCACTGCCC +s monDom1.scaffold_14981 971824 10 - 1219285 GTCTATGCTA +s galGal2.chr24 4798236 10 + 5910111 GCTCCTGCTT + +a score=62473.0 +s hg17.chr11 18240604 47 - 134452384 TCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCAG---------TGA +s panTro1.chr9 18428421 47 - 136640551 TCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCAG---------TGA +s rheMac1.SCAFFOLD60240 82275 47 + 98479 TCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAGCACCCAG---------TGA +s marmoset.ENm003_1 348304 46 - 718711 TCCTGAGCGCGCTCGAGGAGTACACCAAGA-GCTGAGCTCCCAG---------TGA +s galago.ENm003_1 364471 47 - 721696 TCCTGAGCGCCCTGGATGAGGCCGCCAAGAAGCTGAACACCCAG---------TAA +s mm6.chr9 46243608 47 + 124135709 TCCAGAGTGTGATCGACAAGGCCAGCGAGACTCTGACTGCCCAG---------TGA +s cow.ENm003_1 332811 47 - 607368 TCCTGGCCGCCATAGACGAGGCCTCCAAGAAGCTGAACGCCCAG---------TGA +s canFam1.chr5 19717841 47 + 92064832 TGCTGGCTGCCATCGACGAGGCCACCAAGAAGCTGAACGCGCAG---------TGA +s shrew.ENm003_10 7317 47 + 26607 CCGGGGTCGCCTGGGACCAGGTCCACCAGCAGCTCGAGAGCCAG---------TGA +s armadillo.ENm003_1 168389 47 - 560540 TCCAGAACGCCCTGGATGAGGCCTCCAAGAAGCTGAAACCCAGC---------TGA +s elephant.ENm003_1 284268 47 - 658450 TCCTGACCGCCGTCGATGAGGCTGCCAAGAAGCTGAACGCCCAG---------TGA +s monDom1.scaffold_14981 241876 47 + 1219285 TTCTGAACTTCCTGGAGGAAGCCCGGAAGTCCTTGAGCAGCTCA---------TAA +s galGal2.chr24 1113679 50 - 5910111 --CTGACACCGCTGGCCGACGAGCTGAAGGAGCAGGTGGCACAG----AGCGTGGA +s xenTro1.scaffold_18 1462633 52 + 3986068 ----AAACAACCTGGCAAAAATTTGGGAAAATCTGAGAGCCAAGCTCCAAAGACAG +s danRer2.chr16 24190654 1 + 42763181 -------------------------------------------------------A + +a score=383490.0 +s hg17.chr11 18240473 131 - 134452384 CGGCGCCAGA-CTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAG----------------------CCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCC-GTGCT----GGAGAGCTTCAAGGTCAGCT +s panTro1.chr9 18428290 131 - 136640551 CGGCGCCAGA-CTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAG----------------------CCCGCGCTCGAGGACCTCCGCCAGGGCCTGCTGCCC-GTGCT----GGAGAGCTTCAAGGTCAGCT +s rheMac1.SCAFFOLD60240 82144 131 + 98479 CGGCGCCCGC-CTGGCCGAGTACCACGCCAAGGCCAGCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAG----------------------CCCGCGCTCGAGGACCTCCGCCAGGGCCTGCTGCCC-GTGCT----GGAGAGCTTCAAGGTCAGCT +s marmoset.ENm003_1 348173 131 - 718711 CGGCGCCAGC-CTGGCCGAGTACCACGCCAAGGCCAGCGAGCATCTGAGCACACTCGGCGAGAAGGCCAAG----------------------CCCCTGCTCGAGGACCTTCGCCAAGGCCTGCTGCCC-GTGCT----GGAGAGCTTCAAGGCCAGCT +s galago.ENm003_1 364340 131 - 721696 CACCGCCAGC-CTAGCTGACTACCACGCCAAGGCCAGCGAGCACCTGAGCGCGCTGGGCGAGAAAGCCAAG----------------------CCCGCGCTGGAGGACCTGCGCCAGGGCCTGATGCCC-GTGCT----GGAGAGCTTCAAGGTCAGCC +s mm6.chr9 46243477 131 + 124135709 CAACCCTACC-TTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGAGAAAGCCAGA----------------------CCTGCGCTGGAGGACCTGCGCCATAGTCTGATGCCC-ATGCT----GGAGACGCTTAAGACCCAAG +s cow.ENm003_1 332683 128 - 607368 CGG---CAGC-CTGGCCGAGTACCACGCCAAGGCCAGCGAGCAGCTGAAGGCGCTGGGCGAGAAGGCCAAG----------------------CCGGTGCTGGAGGACCTCCGCCAGGGCCTGCTGCCC-GTGCT----GGAGAGCCTCAAGGTCAGCA +s canFam1.chr5 19717710 131 + 92064832 CGGCGCCAGC-CTGGCCGAGTACCACGCCAGGGCCAGCGAGCAGCTGAGCGCGCTCGGCGAGAAGGCCAGG----------------------CCCGCGCTCGAGGACCTGCGCCAGGGCCTGCTGCCC-GTGCT----GGAGAGCTTCAAGGTCAGCC +s shrew.ENm003_10 7196 121 + 26607 -----------CTGGCGGACTACCACAGCAAGGCCAGCGAGCAGCTGAGCGCACTGCGCGACAGGACCAAG----------------------CCCGCGCTGGACGACCTCGTGCTGGGCCTCCTGCCC-GTGTG----GGAGAACATCAAGTCCAGCG +s armadillo.ENm003_1 168258 131 - 560540 CGGCGCCAGC-CTCGCCCAGTACCAGGCCAAGGCCTCAGAGCAGCTGCGGGAGCTCGGCGAGAAGGCCAAG----------------------CCCGCTTTCGAGGACTTCCGGCAGGGCCTTCTGCCC-GTGCT----GGAGAGCCTCAAGGTCAGCT +s elephant.ENm003_1 284146 122 - 658450 C----------TTCGCCGAGTACCGCAGCAAGGCCTTGGAGCACCTGAGCGCGCTCGGCGACAAGGCCAAG----------------------CCGGTGCTGGAGGACTTCCGCCAGAGCCTCCTGCCC-GTGTT----TGAGAACCTCAAGGTCAGTT +s monDom1.scaffold_14981 241745 131 + 1219285 C-TTGCCCTCTCCCGCTGACTATCAAACCAAGATAACCGAGCAGCTCAAAGCCTTGAAGGAAAAATTCTCC----------------------CCCATCCTGGAGGACCTCAAAACAAG--TGCTGACC-CTATTTCCCAGAAAGC--CAAAGCCGATA +s galGal2.chr24 1113538 141 - 5910111 CGGCG--GGCGCTGG---------AGCCCTTTGCCACCGAGCTGCGGGAGAAGCTGCAGGACAACGCCGACAGCATCCAGGCCTCTCTGGGCCCCTACGCCGAGCGGCTGCAGCAGCAGATCGACAGCA-GCGTG----GAGGGGCTGAAGGGGCAG-- +s xenTro1.scaffold_18 1462510 123 + 3986068 AGGTCCCAGA-GCTGAGGAGTACAGAGCCCAACTGTCACAGCATATTGAGAATTTGAAGGAGAAGTATGGA----------------------CCCCTGGCCCAGAGCATCAGAGAACGCCTGGTACCCCATGCA----GAGGAG-------GCCAG-- +s danRer2.chr16 24197809 99 + 42763181 -GACTCCC---CTGACCGAG------------------GATCTGCAGGTCCAGATTAGAGAGAGAGCCCAG----------------------ATGG------------TCCAGCAGAGTCTTACACCCTATGCT----GAAGATGTGAAGGAGAAGCT + +a score=226759.0 +s hg17.chr11 18240398 75 - 134452384 CACGCATCTGGCCCCCTACAGCGAC--GAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGG +s panTro1.chr9 18428215 75 - 136640551 CACGCATCTGGCCCCCTACAGCGAC--GAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGG +s rheMac1.SCAFFOLD60240 82069 75 + 98479 CACGCATTTGGCGCCCTACAGCGAT--GAGCTGCGCCAGCGCCTGGCCGCGCGCCTTGAGGCGCTCAAGGAGAACGG +s marmoset.ENm003_1 348098 75 - 718711 CACACAACTGGCACCCTACAGCGAC--AAGCTGCGCCAGCGCTTGGCCACGCGCCTCGAGGCGCTCAAGGAGAGCGG +s galago.ENm003_1 364265 75 - 721696 CACTCAGCTGGCTCCCTACAGCGAC--GACCTGCGCCAGCGCCTGGCCACGCGCCTCGAGGCCCTCAAGGAGGGCGG +s mm6.chr9 46243408 69 + 124135709 CACACAGCTAGCGCCCCACAGCGAA--CAGATGCGCGAGAGCCTGGCCCAGCGCCTGGCTGAGCTCAAG------AG +s cow.ENm003_1 332608 75 - 607368 GCAGCAGCTGGCGCCCTACAGCGAC--GACCTGCGCCAGCGGCTGACCGCGCGCCTGGAGGCGCTCAAGGAGGGCGG +s canFam1.chr5 19717635 75 + 92064832 CGCCCAGCTGGCCCCCTACAGCGAC--GACCTGCGCGAGCGCCTGGCCGCGCGGCTGCAGGCGCTCAAGGAGGGCGG +s armadillo.ENm003_1 168183 75 - 560540 CTCGCAGCTGAGCCCCCACAGCGAG--GAGCTGCGCCAGCGGGTGATGGCCCGGCTCGAGGCGCTCAAGGAGGGCGG +s elephant.ENm003_1 284071 75 - 658450 CTCGCAGCTGACCCCGTACAGCGAG--GAGCTGCGCCAGCGGCTGGCCAGCCGGCTCGAGGCGCTCAAGGAGGGCAG +s monDom1.scaffold_14981 241670 75 + 1219285 GGAATTTGTGAAGCCCTACCACGAGCAGATCAAGACCAGCG--TGAGCCAGAAGATTCAGGAGCTCCGGGAGAAAGG +s galGal2.chr24 1113474 64 - 5910111 GGCCAAGCTGAGCCCCTACGCCGAT--GAGCTGCGCTCGCAGGTGGAC--------CGCGGCACC---GGGGAGCTG +s xenTro1.scaffold_18 1462435 75 + 3986068 CTCAAGGCTCACACCCTACAGTGAA--GAGGTCAGGGTAAAGCTGGTCGAGAAACTAGAAGAGCTTAAGGCCAATGC +s danRer2.chr16 24197734 75 + 42763181 GGTTCAGCTGGAGCCCTACACTGCT--GAACTCAAGGAGAAAGTGGACCAGCATCTGCAGGAGTTCCAGAAGACCGT + +a score=90684.0 +s hg17.chr11 18240365 33 - 134452384 ---CGACCGCGCGCGCGCCCATGTGGACGCGCTGCG +s panTro1.chr9 18428182 33 - 136640551 ---CGACCGCGCGCGCGCCCATGTGGACGCGCTGCG +s baboon.ENm003_1 216124 29 - 625247 ---CAGCTGCTGGGGGGC----GTGGACGAGGCGCG +s rheMac1.SCAFFOLD10815 5283 29 + 45664 ---CAGCTGCTGGGGGGC----GTGGACGAGGCGCG +s marmoset.ENm003_1 348065 33 - 718711 ---CGACCGCGCACGCGTCCACGTGGACACGCTGCG +s galago.ENm003_1 364232 33 - 721696 ---CGACCGCGCGCGCGCCCACGTGGACACGCTGCG +s mm6.chr9 46243375 33 + 124135709 ---CGACCGCATGCGCACACACGTAGACTCTCTGCG +s cow.ENm003_1 332575 33 - 607368 ---CGACCGCGCGCGCGCCCACGTGGAGACGCTGCG +s canFam1.chr5 19717602 33 + 92064832 ---GGACCGCGCGCGCACCCACGTGGACGCGCTGCG +s armadillo.ENm003_1 168150 33 - 560540 ---CGACAGCGTGCGCACCTACGTGGACTTGCTGCG +s elephant.ENm003_1 284038 33 - 658450 ---CGACCGCGCCCGCGTCCATGTGGATGCGCTGCG +s monDom1.scaffold_14981 241637 33 + 1219285 ---GGATCGGGCCCAGGGCCACATAGAAACGGTTCA +s galGal2.chr24 1113441 33 - 5910111 ---CCAGCAGATCGGCACCAACATCCGCGAGCTGCA +s xenTro1.scaffold_18 1462402 33 + 3986068 ---GGACAAAGTGAGAGTGGATGTTGACTCCCTTCG +s danRer2.chr16 24190565 33 + 42763181 AGGAAACCTGGAGCAGA---GTGTGAAGGAGCTGCA + +a score=651650.0 +s hg17.chr11 18240101 264 - 134452384 CGAACAGCTCGGC-CCTGTGACC-----CAGGAGTTCTGGGATAACCTGGAAAAGGAGACA------------GAGGGCCTGAGGCA---GGAGATGAGCAAGGATCTGGAGGAGG------------TGAA-------------------------------------------GGCCAAGGTGCAGCCCTACCTGGACGACTTC---------------CAGA---AG------AAGTGGCAG------------------GAGGAGAT--GGAGCTC----------TACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAG-AGGGCGC---GCG--C--------------------------------CAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGA----GATGCG +s panTro1.chr9 18427918 264 - 136640551 CGAACAGCTCGGC-CCTGTGACC-----CAGGAGTTCTGGGATAACCTGGAAAAGGAGACA------------GAGGGCCTGAGGCA---GGAGATGAGCAAGGATCTGGAGGAGG------------TGAA-------------------------------------------GGCCAAGGTGCAGCCCTACCTGGACGACTTC---------------CAGA---AG------AAGTGGCAG------------------GAGGAGAT--GGAGCTC----------TACCGCCAGAAGGTGGAGCCGCTGCGCGCCGAGCTCCAAG-AGGGCGC---GCG--C--------------------------------CAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGA----GATGCG +s baboon.ENm003_1 215856 268 - 625247 GGAAAAGCTCAGG-CCTCTGAGTGGGAGCGAGGCTCCTCGGCTCCC-----ACAGGACCCA------------GTGGGCATGCGGCA---GCAGCTGCAGGAGGAGTTGGAGGAGG------------TGAA-------------------------------------------GGCGCGCCTCCAGCCCTACATGG-----------------------CAGA---AGCGCACGAGCTGGTGG------------------GCTGGAATTTGGAAGGC----------TTGCGGCAGCAACTGAAGCC-CTACACGATG-GATCTGAT-GGAGCAG---GTGGCC--------------------------------CTGCGCGTGCAGGAGCTGCAGGAGCAGTTGCGCGTGGTGGGAGAAGACACCAAGGCC +s rheMac1.SCAFFOLD10815 5015 268 + 45664 GGAAAAGCTCAGG-CCTCTGAGTGGGAGCGAGGCTCCTCGGCTCCC-----ACAGGACCCG------------GTGGGCATGCGGCA---GCAGCTGCAGGAGGAGTTGGAGGAGG------------TGAA-------------------------------------------GGCGCGCCTCCAGCCCTACATGG-----------------------CAGA---AGCGCACGAGCTGGTGG------------------GCTGGAATTTGGAAGGC----------TTGCGGCAGCAACTGAAGCC-CTACACGATG-GATCTGAT-GGAGCAG---GTGGCC--------------------------------CTGCGCGTGCAGGAGCTGCAGGAGCAGTTGCGCGTGGTGGGAGAAGACACCAAGGCC +s marmoset.ENm003_1 347801 264 - 718711 CGAACAGCTCGGC-CCGGTGACC-----CAGGAGTTCTGGGAAAACCTGGAAAAGGAGACA------------GAGGTGCTGAGGCA---GGAGATGAGCAAGGACCTGGAGGAGG------------TGAA-------------------------------------------GGCCCAGGTGCAGCCCTACCTGGACGACTTC---------------GAGA---AG------AAGTGGGAG------------------GAGGAGAT--GAAACTC----------TATTCCCAGAAGTTAGAACCGCTGCGCACGGAGCTCCAGG-AGGGCGC---GCT--C--------------------------------CAGAAGCTGCAGGATCTGCAGGAGAAGCTGAGCTCGCTGGGAGAGCA----GGTGCG +s galago.ENm003_1 363968 264 - 721696 TGAGCAGCTGGGC-ACAGTGAGC-----CAGGAGTTTTGGGATAAGCTGGAGAAGGAGACT------------GAGGGACTGCGGCA---GGAGATGAACAAGGATCTGGAGGAGG------------TGAA-------------------------------------------GCAGAAGGTGCAGCCCTACCTGGACGAGTTC---------------CAAA---AG------AAGTGGCAG------------------GAGGAGGT--GGAACGC----------TACCGTCAGAAGGTGGAGCCGCTGGGCTCCGAGCTGCGCG-AAGGCGC---GCG--C--------------------------------CAGAAGCTGCAGGAGCTGCACGAGAAGCTGGTCCCGCTAGGCGAGGA----CTTGCG +s mm6.chr9 46243111 264 + 124135709 GGAACGGCTGGGC-CCATTGACT-----CGGGACTTCTGGGATAACCTGGAGAAAGAAACA------------GATTGGGTGAGACA---GGAGATGAACAAGGACCTAGAGGAAG------------TGAA-------------------------------------------ACAGAAGGTGCAGCCCTACCTGGACGAATTC---------------CAGA---AG------AAATGGAAA------------------GAGGATGT--GGAGCTC----------TACCGCCAGAAGGTGGCGCCTCTGGGCGCCGAGCTGCAGG-AGAGCGC---GCG--C--------------------------------CAGAAGCTGCAGGAGCTGCAAGGGAGACTGTCCCCTGTGGCTGAGGA----ATTTCG +s cow.ENm003_1 332311 264 - 607368 TGAACAGCTGGGC-CCAGTGACC-----CAGGAGTTCTGGGACAACCTGGAAAAGGAGACC------------GCGTCGCTGAGGCA---GGAGATGCACAAGGACCTGGAGGAGG------------TGAA-------------------------------------------GCAGAAGGTGCAGCCCTACCTGGACGAGTTC---------------CAGA---AG------AAGTGGCAC------------------GAGGAGGT--GGAGATC----------TACCGCCAGAAGGTGGCGCCGCTGGGCGAGGAGTTTCGCG-AGGGCGC---GCG--C--------------------------------CAGAAGGTGCAGGAGCTGCAGGACAAGCTGAGCCCTCTGGCCCAGGA----GCTCCG +s canFam1.chr5 19717338 264 + 92064832 CGAACAGATCGGC-CCGGTCACG-----CAGGAGTTCTGGGATAACCTGGAGAAGGAGACG------------GAGGTGCTGCGGCA---GGAGATGAGCAAGGACCTGGAGGAGG------------TGAA-------------------------------------------GCAGAAGGTGCAGCCCTACCTGGACGACTTC---------------CAGA---AG------AAGTGGCAG------------------GAGGAGGT--GGAGCTG----------TACCGCCAGAAGGTGGCGCCGCTGGGCTCGGAGCTGCGCG-AGGGCGC---GCG--C--------------------------------CAGAAGCTGCAGGAGCTGCAGGAGAAGCTGAGCCCGCTGGGCGAGGA----GCTGCG +s armadillo.ENm003_1 167898 252 - 560540 CGAGCAGCTCAGC-CCAGTGACC-----CAGCAGTTCTGGGATAACCTGGAAAAGGAGACC------------GCAGGGCTGAGGCA---GGAGCTCAGCCAGGACGTGCAGGAGA------------TCAA-------------------------------------------GCAGAAGATGCAGCCCTACCTGGACGACTTC---------------CAGA---AG------AAGTGGCAG------------------GAGACGGC--GGAGCGG----------TACCGCCAGAAAGTGACGCCGCTGGGC------------G-AGGACGC---GCG--C--------------------------------CACAAGCTGCAGGAGCTGCAGGGGCAGCTGGGCGAGCTGGGCCAGGA----GGTGCG +s elephant.ENm003_1 283774 264 - 658450 GGAGCAGATAGGC-CCCGTAACC-----CAGCAGTTCTGGGATAACCTGGAAAAGGACATC------------GCCCACCTGCGGCA---GGAGATGAACAAGGACCTGGAGGAGG------------TGAG-------------------------------------------GCAGAAGGTGCAGCCCTACCTGGACGACTTC---------------CAGA---AG------AAGTGGCAG------------------GAGGAAGT--GGAGCTC----------TACCGCCATAAGGTGGGGCCGCTGGGCGACGAGTTCCGCG-ACAGCGC---GCG--C--------------------------------CAGAAGCTGCAGCAGCTGCAGGAGAAGCTGAGCCCGTTGGCCGAGGA----GCTGCG +s monDom1.scaffold_14981 241373 264 + 1219285 TGAGGAGATTAAC-CCTACCTTC-----GAGGAAATCAAGGAAACCATCATCAAGGAAACC------------TCGGACCTCCGCCA---AGAGATGACCAAGGGCTTGGAAGCAG------------TCAA-------------------------------------------GAAGAGTATCGATCCCCACCTGGAGGAGTTT---------------CAGA---AG------AAGTGGGCC------------------GCAGATGT--AGAAAAT----------TTCCGCCAGAGGGTAGGCCCACTGACCCAGGATCTGAAGG-ACAGCAC---CAA--G--------------------------------CAGAAGTTCGATGAGCTGCACCAGAAGCTGAGCCCCATTGGCAAGGA----GATTCG +s galGal2.chr24 1113082 359 - 5910111 CAAGCAGCTCAA-----GTGAGC-----GGAGGGACCACCGAGGCTCTGGGGTTGGGGGCA------------GGGGAG----GGCACAGGGTGCTGAGTGCTGAGCGCTGGGAGG------------TGGGTGTTGCATGCTGGGCACCCGGCGCTGCGCTCTGGGTGCTGCGTGTAAGACACGGGGCACTGACTGCCCGCTCTCCACAGCACCCTGCTGCAGA---GC------AACCTGCAGAGCGCAAACTCATACGCCGAGGAGCT--GCAGCGG----------CGCC---------TGGTGCCCTTTGCCACGGAGCTGCAGGCACAGCTG---GTG--CAGGACTCACAGCGGCTGAAGAAGCAGATCCAGCAGGAGCTGGCCGAGCTGCAGGCCAAGCTGGCTCCTTACGCCGACGA----GGTGCA +s xenTro1.scaffold_18 1462118 284 + 3986068 -GAGAAGCTTGACACCTTTGGTA-----CCAATGCTATG----AACCTGAGAAAGCAAATAAATCCCTATGTAGAAAATATCAGGGA---ACAGGTGTCCAAAGAGCTAGAAAAGGAACTCCCAGTAATCAA-------------------------------------------GGAGAAAATCCGCCCCATCCTGGAAGCTTTC---------------CAGA---AA------CGTTGGGCT------------------GATGATGC--AAAGGCT----------TACCAGGAGAAAATCTCTCCCCTGGTAGCTGAGCTTCAAA-AGCAAAC---CAA--G--------------------------------AACAACCTGGATTCCTTGTATAAAAAGATCACTCCTATTGCTGAAGA----GATAAG +s danRer2.chr16 24197456 278 + 42763181 -AAACAGGTGGAT-CCTCTGACT-----GAAGAGCTGATGAACAAAATCACCAAGGAGACT------------GAAGTGCTGAGGGA---GCGTCTGGGCCAGGACCTGATCAATG------------TGAG-------------------------------------------AGATAAACTCGAGCCCTATGCTGACAACATG---------------AAGAGCCAG------ATCCAGCAG------------------AGAGTGGA--GGAGCTCAGGGCGGCCATGGCTCCGTATGCTGACTCC-CTGGATTCTGAGACCCTGA-AGGCCACTCTGCT--C--------------------------------CAGAAGAGTGAGGAGCTGAGAGGAAACCTGGAGCAGAGTGTGAAGGA----GCTGCA + +a score=33826.0 +s hg17.chr11 18240059 42 - 134452384 T---GACAACTGGGACA-------GCGTGACC----TCCAC--CTTCAGCAAGCTGCG +s panTro1.chr9 18427876 42 - 136640551 T---GACAACTGGGACA-------GCGTGACC----TCCAC--CTTCAGCAAGCTGCG +s baboon.ENm003_1 215815 41 - 625247 ----GACAGCCTTGA---------GCAAGACC----TCAACAATATGAACAAGTTCCT +s rheMac1.SCAFFOLD10815 4974 41 + 45664 ----GACAGCCTTGA---------GCAAGACC----TCAACAATATGAACAAGTTCCT +s marmoset.ENm003_1 347759 42 - 718711 G---GACAACTGGGACA-------GCTTGACC----TCCAC--TGTCAACAAGCTGCG +s galago.ENm003_1 363926 42 - 721696 G---GACAACTGGGACA-------GCTTGACC----CCCAC--CTTGACCAAGCTCCG +s mm6.chr9 46243069 42 + 124135709 G---GAAAACTGGGACA-------CTCTGGGT----TCAAC--CGTTAGTCAGCTGCA +s cow.ENm003_1 332269 42 - 607368 G---GACAACTGGGACA-------CCCTGGCC----AGCAC--GTTGTCCAAAGTGCG +s canFam1.chr5 19717296 42 + 92064832 G---GACAACTGGGACA-------GCCTGAGC----AGCAC--GGTGACCAAGCTGCG +s armadillo.ENm003_1 167856 42 - 560540 G---GACAACTGGGACA-------CGTTCAGC----AGCAG--TGTCACCAAACTGCG +s elephant.ENm003_1 283732 42 - 658450 G---GACAACTTGGACA-------CCCTGAGC----AGCAG--CTTCACCAAGCTGCA +s monDom1.scaffold_14981 241325 48 + 1219285 ----GATAACAGAAACAATGACTTCCCTGAAA----GCAGC--CTTGGACGCTTTCTA +s galGal2.chr24 1113031 46 - 5910111 G---GGCAGCAGTGCCA-------AGGAGACCGTGGACCAA--CTGCAGCAAGCTGAG +s danRer2.chr16 24197416 40 + 42763181 GAGTGCTGATATGGCCA-------GTGAATAC----GCCGT--CGTCCTCAAG----- + +a score=11846.0 +s hg17.chr11 18240047 12 - 134452384 ---CCTAAAGCTCCT +s panTro1.chr9 18427864 12 - 136640551 ---CCTAAAGCTCCT +s baboon.ENm003_1 215805 10 - 625247 GAGCCTGAAA----- +s rheMac1.SCAFFOLD10815 4964 10 + 45664 GAGCCTGAAA----- +s marmoset.ENm003_1 347747 12 - 718711 ---CCTGAAGCTCCT +s galago.ENm003_1 363914 12 - 721696 ---CCTGAAACTCCT +s mm6.chr9 46243057 12 + 124135709 ---CCTGAATCTCCT +s cow.ENm003_1 332257 12 - 607368 ---CCTGAAACTCCT +s canFam1.chr5 19717284 12 + 92064832 ---CCTGAAACTCCT +s armadillo.ENm003_1 167844 12 - 560540 ---TCTGAAGCTCCT +s elephant.ENm003_1 283720 12 - 658450 ---CCTGAAGCTCCT +s monDom1.scaffold_14981 241319 6 + 1219285 ---CCTGAA------ +s galGal2.chr24 1113009 12 - 5910111 ---TCTGGAGGTACT +s xenTro1.scaffold_18 1462105 12 + 3986068 ---CCTGAAGATCAC +s danRer2.chr16 24197401 12 + 42763181 ---TGAAAGACTGAC + +a score=242126.0 +s hg17.chr11 1812377 30 + 134452384 ATGCTCCACCT--------------GCATGGCTGGCAAACCATG +s panTro1.chr9 2001217 30 + 136640551 ATGCTCCACCT--------------GTATGGCTGGCAAACCACG +s baboon.ENm011_1 74768 29 + 550206 ATGTTCCACCT--------------GCACGGCTGG-AAACCATA +s rheMac1.SCAFFOLD85282 30078 29 + 69065 ATGCTCCACCT--------------GCACGGCTGG-AAACCATA +s galago.ENm011_1 99833 30 + 434578 ACACTCCACCC--------------ATGTGGCTGGTGAACTGTG +s rn3.chr1 202843226 25 + 268121971 CAACTAGAC-------------------TGCCTTGTAGAAGATG +s mm6.chr7 136850702 25 + 139739827 CAACTGGAC-------------------TACCGTGTAGAAGATG +s canFam1.chr18 56425269 44 + 66173745 AGGCTCCACCTGTGTGACTCCACCCGTGTGACCGACAAACCATG +s tenrec.ENm011_6 1101 17 + 2615 -------------------------ATTTGGCTG--CAAACAAA +s galGal2.chr5 44640419 38 - 56310377 ccacaccacctctttctcCTCC---ATGCAGCA---AAACCACA + +a score=405831.0 +s hg17.chr13 112381694 71 + 114142980 ATGAACTCACCAGAGGCGAGGCTCTGCGT-TGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAA +s panTro1.chr14 95994697 71 + 97804244 ATGAACTCACCAGAGGCGAGGCTCTGCGT-TGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAA +s baboon.ENr132_1 3666 68 + 498334 ATGAACTCACCAGAGGC---GTCCTGGGT-TGCTCAACGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAA +s rheMac1.SCAFFOLD30317 75494 68 - 86939 ATGAACTCACCAGAGGC---GTCCTGGGT-TGCTCAACGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAA +s marmoset.ENr132_1 44583 67 + 578614 ATGAACCCTCCAGAGGC---GTTCTGGGT-TGCTCAATGCAGAGACTCTTATCCA-GGTGTCAGCCTCTGAA +s rn3.chr16 8607378 65 - 90224819 ATCCATTTACCAGAGC----GACCTGGCC-TCCTGCCTAGGGGGGCTCATTCCCAAGG-ACCGGTCT-TGAA +s mm6.chr8 12126968 65 + 127867632 ATTTGTTCACCAGAGT----GTCCTGGCC-TCCTGCCTATGTGGACTCATTCCCAAGG-ACCAGCCT-TGAA +s canFam1.chr22 63116876 49 + 64236280 ATGTGCTGGTC-------------------TGCTCAGGGCAGGAGCTCTTCGCCGGAT-GTCAGTCCCG--- +s rfbat.ENr132_1 27632 65 + 379529 ATGCGCTGGCCAGAGGT---GTGCTGGTTTTGTTCTGGGCAGTGGCCCTTAACCAGGG-ATCAGCCTTT--- + +a score=12611.0 +s hg17.chr13 112381765 144 + 114142980 AGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGGCCC-CCGTGATGAATCCCGTGAT-GAGCCGCC---------GATCCGAGCTCAGG-CTGCG---TCATGGGACCAGCCACAAGGTTGCCTGACCTATAAAGG +s panTro1.chr14 95994768 144 + 97804244 AGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGGCCC-CTGTGATGAATCCCGTGAT-GAGCCGCT---------GATCCGAGCTCGGG-CTGCG---TCATGGGACCAGCCACAAGGTTGCCTGACCTATAAAGG +s baboon.ENr132_1 3734 97 + 498334 AGATACACGTGCCTGGGCCTCTTTCCTGAAGATGGACCCAGCAGGTCTGGAGGGAGGGCC-CTGTGATGCACCCTGTGAT-GAGCCGCT---------GATCCGAGCT--------------------------------------------------- +s rheMac1.SCAFFOLD30317 75562 107 - 86939 AGATACACGTGCCTGGGCCTCTTTCCTGAAGATGGACCTAGCAGGTCTGGAGGGAGGGCC-CTGTGATGCACCCTGTGAT-GAGCCGCT---------GATCCGAGCT-------------TCGTGGAACC---------------------------- +s marmoset.ENr132_1 44650 133 + 578614 AGAG--ACGTGCCTGGGCTTCCTCTCTGAAGATGGACCTGGCAGGTCTGGAGGGAGGCCC-CTGTGATGAACCCTGTGAT-AAGCCACT---------GATT---------G-CTGTG---TCATGGGAACAGCCACAAGGTCGACTGACCTATAAAGG +s rn3.chr16 8607443 81 - 90224819 GGGTGTAT-TATATGG-----TTTCATGAAG-----------------GGAGGGAGGTCT-GTGTGA----CCCTGGGACACCGCTACA---------GGT------------CAGT----------------------GATTG-------TTCGGAAG +s mm6.chr8 12127033 79 + 127867632 GGACGCAA-TGTAGGG-----CTCCATGGA------------------GGAGGGAGGTCT-GTGTGA----CACTGGGAC-TTGCCACA---------GGT------------CAGT----------------------GATTG-------TTCAGAGG +s canFam1.chr22 63116925 101 + 64236280 AGACGCACATGCCTGGGCTTCTCCCTCA-------------CAGGACTGCAGCAAGGACCACCACGGTGGACACTGAG---GAGGCCCC---------G--------CCAGGCCGA-GGGATGGAGGAGA-GGCCA----------------------- +s rfbat.ENr132_1 27836 112 + 379529 aGATGTACATGCCTGGGCTTCTCCCATA-------------CAGGTCCAAAGCAAGGTCCACTGTGGCAGATACTGTGAC-AAGGTCACACCTAGTTGG--------CCAGGTCTA-GTGATGATGTAAA-TGTCG----------------------- + +a score=7383.0 +s hg17.chr13 112381909 44 + 114142980 TCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTACAGCTGCCAG +s panTro1.chr14 95994912 44 + 97804244 TCACAGGAGTGCCTCAGGGAGACAGAAGCAGTTACAGCTGTCAG +s marmoset.ENr132_1 44783 32 + 578614 TCACAGGAGTGCCTCAGGGAGGCAGTAGCA------------AG +s rn3.chr16 8607524 44 - 90224819 TCACAGGAATGCCACCCTCAGGAAGAGTTATCTATCTTTTCCAG +s mm6.chr8 12127112 44 + 127867632 TCACAGGAGTGCCACCCTCAGGCAGAGTCATCTGTCTTTTCCAG +s canFam1.chr22 63117026 32 + 64236280 TCGATGGAGCAGCATGGGGTCGTCATGGTG------------GG +s rfbat.ENr132_1 27948 32 + 379529 CAGGAGGAGTGACCTAGTGCGACAGTGGCG------------GT + +a score=84131.0 +s hg17.chr14 7658335 10 - 106368585 GAGGAGCTAA +s panTro1.chr15 7746476 10 - 106954593 GAGGAGCTAA +s baboon.ENr322_1 325090 10 - 705101 GAGGAGCTAA +s rheMac1.SCAFFOLD65194 74587 10 + 139520 GAGGAGCTAA +s marmoset.ENr322_1 314879 10 - 740094 GAGGAGCTAA +s galago.ENr322_1 375410 10 - 713249 GAGGAGCTAA +s rn3.chr6 15343184 10 - 147642806 GAGGAGCTAA +s mm6.chr12 12401629 10 - 115788303 GAGGAGCTAA +s rabbit.ENr322_1 324585 10 - 557677 GCGCAGCTGA +s cow.ENr322_1 357229 10 - 609512 GAGGAGCTAA +s canFam1.chr8 6815616 10 - 77374719 GAGGAGCTAA +s rfbat.ENr322_1 313473 10 - 530160 GAGGAGCTAA +s elephant.ENr322_1 239178 10 - 422862 GCGCAGCTAA +s monDom1.scaffold_15016 401058 10 - 2367050 AAGAAGCTAA +s platypus.ENr322_1 85131 10 - 159352 AAGAAGCTAA +s galGal2.chr5 11716518 10 - 56310377 AAGAAGCTAA +s xenTro1.scaffold_588 534661 10 - 833634 AAGAAGCTAA +s danRer2.chr17 30167684 4 - 42274751 ------CTAA + +a score=7882659.0 +s hg17.chr14 7657711 624 - 106368585 CGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGGCCGCAGCGGCACGGCCAGCGGAGGCAGCACCCCGCACCTgggcgg---cccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACGGTGCACCGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s panTro1.chr15 7745853 623 - 106954593 CGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGGCCGCAGCGGCACGGCCAGCGGGGGCAGCACCCCGCACCTgggcgg---cccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACGGTGCACCGGCGGAGCCACACCGGCGAGCGGCC-TACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s baboon.ENr322_1 324466 624 - 705101 CGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCGGAGAACGTATACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCTGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGGCCGCAGTGGCACGGCCAGCGGAGGCAGCACCCCGCACCTgggcgg---ccccggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACAGTGCACAGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCATGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s rheMac1.SCAFFOLD65194 73963 624 + 139520 CGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCTGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGGCCGCAGTGGCACGGCCAGCGGAGGCAGCACCCCGCACCTgggcgg---ccccggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACAGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCATGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s marmoset.ENr322_1 314255 624 - 740094 CGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCCGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCGCGCCAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGGCCGCAGCGGCACGGCCAGCGGAGGCAGCACTCCGCACCTgggcgg---gcccgggcccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACCGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGTGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s galago.ENr322_1 374786 624 - 713249 GGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCTGCGCTCATCCCATCCGAGAACGTGTATTCACAGTGGCTCGTGGGCTACGCGGCGTCACGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCGCGCCAGTCGCCCTTCGCCACATCGTCCGAGCACTCATCCGAGAACGGCAGCCTGCGCTTCTCCACACCGCCTGGTGACCTGCTGGACGGCGGTCTGTCGGGCCGCAGCGGTACGGCCAGCGGGGGCAGCACGCCGCACCTGGGTgg---cccgggcccggggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGTGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACCGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCATGGCGAGCACTTGCTGACTAACGATGTCAAAATCGAGCAGGCCGA +s rn3.chr6 15342560 624 - 147642806 GGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCACCCGCCGCCCTCATCCCATCCGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCGGCGTCGCGCCACTTCATGAAGGACCCGTTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCCACGTCGTCGGAACATTCCTCTGAGAACGGCAGCCTGCGCTTCTCCACGCCACCCGGGGACCTGCTGGACGGCGGGCTGTCGGGGCGCAGTGGCACGGCGAGCGGGGGCAGCACGCCTCACCTGGGTGG---CCCGGGTCCTGGGCGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTCTTCAAAAACTGTAGCAACCTGACGGTGCACCGGAGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTTACGCGCCACATGAAGACGCACGGTCAGATCGGCAAGGAGGTGTACCGCTGCGATATCTGCCAGATGCCCTTCAGTGTCTACAGTACCCTGGAGAAACACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAATCGAGCAGGCTGA +s mm6.chr12 12401005 624 - 115788303 GGCCAA------G---CGCATCAAGGTGGAGAAAGACCTGGAGCTGCCACCTGCCGCCCTCATCCCATCTGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCAGCATCGCGCCACTTCATGAAGGACCCATTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCCACATCGTCGGAACATTCCTCTGAGAACGGCAGCCTGCGCTTCTCAACGCCACCCGGGGACCTGCTGGACGGCGGGCTGTCCGGGCGCAGTGGCACGGCGAGCGGGGGCAGCACACCTCACCTGGGTGG---TCCGGGTCCTGGGAGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACATGTGAGTACTGCGGCAAGGTCTTCAAGAACTGTAGCAACCTGACGGTGCACCGGAGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAATCGAGCAGGCTGA +s rabbit.ENr322_1 323975 610 - 557677 -----------------------AGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCCTCCGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCCGCGTCGCGCCACTTCATGAAGGACCCCTTCCTGGGCTTCACCGACGCGCGCCAGTCGCCCTTCGCCACGTCGTCGGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTGTCCGGGCGCAGCGGCACGGCCAGCGGCGGCAGCACGCCGCACCTgggcgg---cccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGGAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTCACCGTGCACCGCCGCAGCCACACGGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTGACTCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAGAAGTGGCACGGCGAGCACTTGCTGACGAACGACGTCAAGATAGAGCAGGCCGA +s cow.ENr322_1 356605 624 - 609512 GGCCAA------G---CGCATCAAGGTGGAGAAGGACCTAGAGCTGCCGCCTGCCGCGCTCATCCCGTCGGAGAATGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCGCGCCAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCACCCGGGGACCTGCTGGATGGCGGGTTGTCGGGCCGTAGCGGCACGGCCAGCGGGGGCAGCACGCCGCATCTgggcgg---cccgggccccgggcggccgAGCTCCAAGGAGGGGCGGCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTCACGGTGCACCGACGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAAATGCCCTTCAGCGTCTATAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCGGA +s canFam1.chr8 6814992 624 - 77374719 GGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCCGCGTCGCGGCACTTCATGAAGGACCCGTTCCTGGGCTTCACGGACGCGCGCCAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGGCTGTCGGGCCGCAGCGGCACGGCCAGCGGGGGCAGCACGCCGCACCTgggcgg---cccgggccccgggcggccgAGCTCCAAGGAGGGCCGGCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACCGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s rfbat.ENr322_1 312849 624 - 530160 GGCCAA------G---CGCATCAAGGTGGAGAAGGACCTAGAGCTGCCGCCCGCCGCGCTCATCCCGTCTGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCGCGCCAGTCCCCCTTCGCCACGTCGTCGGAGCACTCGTCCGAGAATGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTGTCGGGCCGCAGCGGTACCGCCAGCGGCGGCAGCACGCCACACCTGGGTGG---CCCCGGCCCTGGGCGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACCGGCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGTGCGCAGAGCAGCAAGCTCACACGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s elephant.ENr322_1 238554 624 - 422862 GGCCAA------G---CGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCGGCCGCGCTCATTCCCTCGGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCCGCGTCTCGCCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCGCGCCAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCTGAGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGCGACCTGCTGGACGGCGGGCTGTCGGGGCGCAGCGGCACGGCCAGCGGGGGCAGCACGCCGCACCTgggcgg---cccgggcccggggcggcccAGCTCCAAGGAGGGCCGGCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACCGGCGGAGCCACACCGGTGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGTGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGA +s monDom1.scaffold_15016 400434 624 - 2367050 ATCCAA------G---AGGATAAAGATAGAAAAGGACTTGGACTTGCCACCAGCAACCATCATTCCTTCAGAAAATGTTTACTCGCAGTGGCTGGTGGGATACGCGGCCTCGAGACACTTCATGAAGGATCCATTTCTCGGGTTCACAGATTCGCGACAGTCGCCCTTCGCCACTTCTTCGGAGCACTCCTCAGAGAATGGGAGCCTGCGTTTCTCCACCCCACCTGGGGACATGTTGGATGGAGGCCTCTCAGGACGCAGTGGGACAGCCAGTGGAGGCAGTACCCCCCACATAAGTGG---GCCGGGGCCTGGCCGACCGAGCTCCAAGGAAGGGCGCCGCAGCGACACGTGTGAGTACTGTGGCAAGGTTTTTAAGAACTGCAGCAACTTGACGGTCCACCGTCGGAGCCACACAGGAGAAAGGCCTTACAAATGTGAGCTCTGCAACTACGCATGCGCCCAGAGCAGTAAGCTAACCCGCCATATGAAAACCCATGGCCAGATAGGGAAAGAGGTCTACCGGTGTGATATTTGCCAGATGCCATTCAGCGTTTATAGCACCCTGGAAAAACACATGAAAAAGTGGCATGGAGAACATTTGCTGACAAACGATGTGAAAATAGAGCAGGCGGA +s platypus.ENr322_1 84507 624 - 159352 GTCCAA------G---AGGATAAAGATAGAAAAGGATCTGGACTTGCCACCAGCAACGATCATCCCTTCCGAGAACGTCTACTCCCAGTGGCTGGTCGGGTACGCGGCCTCTCGGCACTTCATGAAGGATCCGTTCCTCGGGTTCACGGACTCCCGACAGTCCCCGTTCGCCACCTCTTCCGAGCATTCTTCGGAGAACGGCAGCCTGCGTTTCTCCACCCCGCCGGGCGACATGCTAGACGGGGGCCTCTCAGGGCGCAGCGGGACCGCCAGCGGGGGCAGCACCCCCCACATcggcgg---gcccggccccggccgACCCAGCTCCAAGGAAGGGCGGAGGAGCGACACGTGCGAGTACTGTGGCAAGGTCTTCAAGAACTGCAGCAACCTCACCGTGCACCGTCGCAGCCATACCGGCGAACGGCCTTATAAATGTGAGCTCTGCAATTATGCCTGCGCTCAGAGCAGTAAGCTCACCCGCCACATGAAAACGCACGGCCAGATAGGGAAGGAGGTGTACCGCTGTGACATCTGCCAGATGCCATTCAGCGTATACAGCACGCTGGAGAAACATATGAAAAAGTGGCACGGAGAACACTTGCTGACAAACGATGTCAAAATCGAGCAGGCGGA +s galGal2.chr5 11715894 624 - 56310377 ATCTAA------A---CGAATAAAAGTTGAGAAAGATTTGGACTTGCCACCAGCAACAATAATACCTTCCGAAAATGTTTACTCCCAGTGGCTGGTAGGGTACGCGGCATCAAGGCACTTCATGAAGGATCCGTTTCTAGGATTCACAGACTCCCGACAATCTCCCTTCGCCACCTCTTCCGAGCATTCGTCGGAGAATGGGAGCCTGCGTTTCTCCACCCCGCCGGGGGACATGCTGGATGGGGGGCTCTCAGGGCGCAGCGGCACGGCCTCCGGAGGCAGCACCCCCCACATCAGCGG---CCCAGGCCCTGGGCGACCCAGCTCGAAGGAAGGGCGCAGGAGCGATACATGTGAGTACTGTGGCAAGGTCTTTAAGAACTGCAGCAATTTGACGGTGCACCGTCGGAGCCACACTGGAGAGCGGCCTTACAAATGCGAGCTCTGCAACTATGCATGTGCCCAGAGCAGTAAGCTGACGCGTCACATGAAAACGCATGGCCAGATAGGGAAGGAGGTCTACCGCTGCGACATTTGCCAGATGCCCTTCAGTGTTTACAGCACCCTGGAGAAACACATGAAAAAGTGGCATGGAGAACATTTGCTGACAAATGACGTCAAAATTGAGCAGGCAGA +s xenTro1.scaffold_588 534037 624 - 833634 ATCAAA------A---AGGATAAAAATTGAGAAAGATCTAGATTTACCCCCAACACCAATAATCCCATCAGAAAACGTTTACTCACAGTGGCTAGTAGGATATGCAGCATCAAGGCACTTCATGAAGGATCCATTTCTAGGATTCACAGACTCTCGACAATCTCCTTTTGCAACTTCTTCTGAGCACTCTTCAGAAAATGGAAGTCTGCGGTTCTCTACACCACCAGGTGACATGCTGGATGGAGGTCTCTCAGGGCGAAGTGGGACAGCGAGTGGCGGCAGCACACCACATATCAGTGG---ACCAGGGCCTGGCCGGCCAAGTTCAAAAGAAGGAAGAAGAAGTGACACATGCGAATTCTGTGGCAAAGTGTTTAAGAACTGCAGCAACCTCACGGTCCACCGCAGAAGCCACACTGGGGAACGGCCTTACAAATGCGAGCTCTGCAACTATGCATGTGCCCAGAGCAGCAAGCTGACACGCCACATGAAAACGCATGGCCAGATAGGTAAGGAGGTCTACCGCTGTGACATTTGCCAGATGCCCTTCAGTGTTTACAGCACCCTGGAGAAACACATGAAAAAATGGCATGGAGAACACTTGCTGACAAATGACGTCAAAATTGAGCAGGCAGA +s tetNig1.chrUn_random 145482037 624 - 171761319 CACAAA------TAAAAGGATAAAGACTGAGAAGGACACGGATGGTTCCCCAGCACCCCTCATTCCCTCTGAAAATGTCTACTCTCAGTGGCTGGTGGGATATGCTGCCTCTCGCCATTTTATAAAAGACCCTTTTCTTGGCTTCAGTGACTCGCGACAATCTCCCTTCGGCACGTCATCTGAGCACTCCTCTGAAAATGGCAGCCTGCGCTTTTCGACGCCCCCAGGAGACCTGATAGACGGTGGCTTGTCAGGTCGTAGCGGTACTGCGAGTGGAGGCAGTACCCCTCATCTCAGTGG------AGGTCCTGGCAGACCCAGCTCAAAGGACGGCAGGAGGTCCGACACCTGTGAGTTCTGTGGCAAAGTTTTTAAAAACTGCAGCAACCTGACCGTGCACCGGCGCAGCCATACTGGTGAGAGGCCCTACAAGTGTGAGCTGTGCAACTACGCCTGCGCTCAGAGCTCCAAGCTCACTCGCCACATGAAGACGCACGGCCAGCTCGGTAAGGAGGTCTATCGATGTGACATTTGCCAAATGCCATTCAGCGTGTACAGCACCCTTGAGAAACACATGAAAAAGTGGCATGGAGAACACTTGATGTCTAATGAGATCAAACTTGAACAAGCAGA +s danRer2.chr17 30167045 633 - 42274751 GGCTAAGCTCTCG---AGGATCAAAATTGAAAAGGATTTGGACATACCCCCAGCCCCCCTAATCCCATCTGAAAATGTCTACTCCCAGTGGCTGGTGGGCTATGCAGCATCCCGCCACTTCATCAAAGATCCTTTCCTTGGCTTCACCGACTCCAGACAATCTCCATTCGCCACCTCCTCGGAACACTCCTCCGAGAACGGAAGCTTGCGATTCTCTACGCCGCCAGGGGACCTGCTGGACGGGGGCCTCTCCGGCCGCAGTGGTACTGCTAGCGGAGGCAGCACCCCGCACCTGGGTGGGGGGCCAGGACCAGGCCGGCCTAGCTCGAAAGAGAGCCGGAGGAGTGACACCTGTGAGTACTGTGGGAAGGTGTTCAAGAACTGTAGCAATCTGACAGTGCACAGACGCAGCCACACAGGCGAGAGGCCCTACAAGTGTGAGCTTTGTAACTACGCCTGCGCCCAGAGCAGCAAGCTCACCCGCCACATGAAGACACACGGCCAGCTCGGTAAGGAAGTGTACCGCTGTGACATTTGCCAAATGCCCTTCAGCGTCTACAGCACGCTTGAGAAACACATGAAAAAGTGGCATGGGGAACATTTGATGACGAATGAGGTCAAAATTGAACAAGCAGA + +a score=534248.0 +s hg17.chr14 7657624 87 - 106368585 gggcggCTTCGCGCCAGGCACCGAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CGC +s panTro1.chr15 7745766 87 - 106954593 gggcggCTTCGCGCCAGGCACCGAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CTC +s baboon.ENr322_1 324379 87 - 705101 gggcggCTTCGCGCCGGGCACCGAGCCTTTCCCTGGGCTTTTCCCGCGCAAGCCCGCACCGCTGCCCAGCCCGGGGCTCAACAG------------CGC +s rheMac1.SCAFFOLD65194 73876 87 + 139520 gggcggCTTCGCGCCGGGCACCGAGCCTTTCCCTGGGCTTTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCGGGGCTCAACAG------------CGC +s marmoset.ENr322_1 314168 87 - 740094 GGGCGGCTTCGCGCCGGGCGCCGAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCTCTGCCCAGCCCCGGGCTCAACAG------------CGC +s galago.ENr322_1 374699 87 - 713249 CGGTGGCTTCGCGCCAGGCGCCGAGCCCTTCCCAGGTCTCTTCCCGCGCAAGCCGGCGCCGCTACCCAGCCCTGGGCTCAACAG------------CGC +s rn3.chr6 15342461 99 - 147642806 CGGGGCCTTCGCGCCAGGCGCAGAGCCCTTCCCAGCGCTCTTCCCACGCAAGCCCGCACCGCTGCCCAGCCCGGGGCTTGGTGGTCCTGCGCTACACGC +s mm6.chr12 12400906 99 - 115788303 CGGGGCCTTCGCGCCAGGCGCAGAGCCCTTTCCAGCTCTCTTCCCACGCAAGCCAGCACCGCTGCCCAGCCCTGGGCTCGGTGGTCCCGCGCTGCACGC +s cow.ENr322_1 356518 87 - 609512 cggtggcTTCGCGCCGGGCACCGAGCCTTTCCCGGGCCTCTTCCCGCGCAAGCCGGCACCGCTGCCCAGCCCCGGCCTCAACAG------------CGC +s canFam1.chr8 6814905 87 - 77374719 cggcggcTTCGCACCGGGCGCCGAGCCCTTCCCGGGGCTGTTCCCGCGCAAGCCGGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CGC +s rfbat.ENr322_1 312762 87 - 530160 CGGTGGCTTCGCGCCAGGCACCGAGCCCTTCCCGGGCCTCTTCCCGCGCAAGCCGGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CGC +s elephant.ENr322_1 238473 81 - 422862 ---TGGCTTC---CCGGGCGCCGAGCCCTTCCCGGGGCTCTTCCCGCGCAAGCCGGCGCCGCTGCCCAGCCCCGGGCTGCCCAG------------CGC +s monDom1.scaffold_15016 400351 83 - 2367050 -AGAAGCTTTGGTCCTGGT---GAGCCCTTCCCGGGCCTCTTCCCCAGGAAGCCGACACCTATTACGAGTCCCAGTTTAAACAA------------TTC +s platypus.ENr322_1 84424 83 - 159352 -AGAAACTTCGGGCCTAGC---GAGCCCTTCCCGGGACTCTTTCCCCGCAAGCCCACGCCCATCACGAGCCCCAGCCTGAACAA------------TTC +s galGal2.chr5 11715811 83 - 56310377 -AGAAACTTTGGCCCAGGC---GAGCCCTTCCCAAACTTGTTCCCTCGGAAGCCAACACCTATCACAAGCCCCAGCTTAAATAA------------CTC +s xenTro1.scaffold_588 533957 80 - 833634 ----AATTTTGGCCCAGGT---GAACCATTTCCAGGCTTGCTCCCACGAAAGCCAATGCCTATTTCTAGTTCTGGACTAAACAA------------CTC +s tetNig1.chrUn_random 145481953 84 - 171761319 CCGAAACTGTAGATCAGAT---GATTCTCTTGTCAGTTTATTTCCCCATAAACCCACTTCCATCACTAGCTCTGGTCTGTCCAA------------CTC + +a score=209661.0 +s hg17.chr14 7657562 62 - 106368585 ga---cgacgacgacgcgggcggctgcgggga------cgcgggcgcgggcggcgcggtcaacgggcgcgg +s panTro1.chr15 7745704 62 - 106954593 ga---cgacgacgacgcgggcggctgcgggga------cgcgggcgcgggcggcgcggtcaacgggcgcgg +s baboon.ENr322_1 324317 62 - 705101 ga---cgacgacgacgcgggcggctgcgggga------cacgggagcgggcggcgcggtcaacgggcgcgg +s rheMac1.SCAFFOLD65194 73814 62 + 139520 ga---cgacgacgacgcgggcggctgcgggga------cacgggcgcgggcggcgcggtcaacgggcgcgg +s marmoset.ENr322_1 314106 62 - 740094 GA---CGACGACGACGCGGGCGACTACGGGGA------CGCGGGCGCGGGCGGCGCGGTCAACGGTCGCGG +s galago.ENr322_1 374637 62 - 713249 GA---CGACGACGACGCAGGAGGCTGTGGCGA------CGCAGGTACGGGTGGCGCAGTAAACGGGCGCGG +s rn3.chr6 15342401 60 - 147642806 -----TGACACCGGAGCTGGTGGCTGCGGGGA------TGCAGGTGCACCGGGCGCAGTGAACGGGCGTGG +s mm6.chr12 12400846 60 - 115788303 -----TGATGCCGGAGCTGTTGGCTGTGGGGA------CGCGGGTGCACCGGGTGCAGTGAACGGGCGCGG +s cow.ENr322_1 356456 62 - 609512 ga---cgacgatgacgccgggggctgcggcga------cgcgggccccgggggcgcggtcaacgggcgcgg +s canFam1.chr8 6814843 62 - 77374719 ga---cgacgacgacgcgggcggctgcgggga------cgcgggcaccggcggcgcggtcaacaggcgcgg +s rfbat.ENr322_1 312700 62 - 530160 GA---CGACGATGACGCGGGTGGCTGCGGTGA------TGCGGGCCCGGGCGGTGCGGTCAACGGGCGCGG +s elephant.ENr322_1 238411 62 - 422862 GA---CGATGAGGACGCGGGTGGCTGCGGGGA------CGCGGGCGCAGGCGGCGCGGTCAACGGGCGCGG +s monDom1.scaffold_15016 400299 52 - 2367050 -----AGACTCCGTGGCCGGAGAGCTTGACCG------TACGGA---GGAAGGGACGGTCAACGGA----- +s platypus.ENr322_1 84372 52 - 159352 -----AGACTCCGTGGTGGGTGAGCTGGAGCG------TCCGGA---GGAAGGGGCCGTCAACGGG----- +s galGal2.chr5 11715759 52 - 56310377 -----AGACTCAGTGGTAGGAGAGCTGGACCG------CACCGA---GGAGGGGACAGTCAATGGA----- +s xenTro1.scaffold_588 533900 57 - 833634 CA---TGAAGATACAGTGGAGAGAGAAATAAT------CCCCAATGATGAAGGGACAGTTAATGGA----- +s tetNig1.chrUn_random 145481891 62 - 171761319 GATGAAGATTCGGTGCCTGAGGAGTCAGACCACCATCCACCAAA---AAGGACAATCATAAATGG------ +s danRer2.chr17 30166628 56 - 42274751 GATGACGATTCAGTAGTGGGGGAAATGGACCA------AGTAGA---GCGGGCAACTGTGAATGG------ + +a score=225811.0 +s hg17.chr14 7657471 91 - 106368585 AGGCGCACTGCCGCAGTACGGCGAGCTCCTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCG----------------------------TGCggc---------gggcgg---cg--gggacgcgggc +s panTro1.chr15 7745613 91 - 106954593 AGGCGCACTGCCGCAGTACGGCGAGCTCCTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCG----------------------------TGCggc---------gggcgg---cg--gggacgcgggc +s baboon.ENr322_1 324226 91 - 705101 GGGCGCACTGCCGCAGTATGGCGAGCTCTTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCg----------------------------cgcggc---------tggcgg---cg--gggacgcgggc +s rheMac1.SCAFFOLD65194 73723 91 + 139520 GGGCGCACTGCCGCAGTATGGCGAGCTCTTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCg----------------------------cgcggc---------tggcgg---cg--gggacgcgggc +s galago.ENr322_1 374546 91 - 713249 GGGCGCGCTGCCTCAGTATGGCGACCTGCTGGCTGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCG----------------------------CGGGGC---------GGGCGG---CG--GTGATGCTGGC +s rn3.chr6 15342338 63 - 147642806 GGGCGCACTGCCGCAGTATGGGGA------------------GAAGCGAGGCGCCTTCCTGAAGCG----------------------------TGCAG-----------------------GCGACGCGGG- +s mm6.chr12 12400783 63 - 115788303 GGGCGCACTGCCGCAGTATGGGGA------------------GAAGCGGGGCGCCTTCCTGAAGCG----------------------------TGCAG-----------------------GCGACACGGG- +s cow.ENr322_1 356356 100 - 609512 GGGCGCGCTGCCGCCCTATGGCGACCTGCTGGCTGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCG----------------------------Cgcggccggcggtgggggcgg---cg--gggacccaggc +s rfbat.ENr322_1 312609 91 - 530160 GGGCGCGCTGCCGCAGTACGGCGAGCTGCTGGCCGACAAGCAGAAGCGCGGGGCCTTCCTGAAGCG----------------------------CGCGGC---------GGGCGG---TG--GGGACACGGGT +s elephant.ENr322_1 238323 88 - 422862 ------GCCGCCGCAGTATGGCGAGCTGCTGGCCGACAAGCAGAAGCGCGGCTCCTTCCTGAAGCG----------------------------CGCGGG---------CAGCGTGGCCG--GCGACCCCGGC +s monDom1.scaffold_15016 400173 116 - 2367050 CGGTGCCATCCAGCAATACAACGACATGTTGGCTGAGAAACAGAAGAGGAGCAGCTTCATGAAAAGGAGCTCAGATCAGCGAGACCTTTGTTCTCGAGAC---------CTGTGT---CA--GAGAGACA--- +s platypus.ENr322_1 84246 121 - 159352 GGGTGCCATCCAGCAGTACAACGACATGCTCGCTGAGAAGCAGAAGAGGAGCAGCTTCATGAAAAGGTCCGCAGACCAGCGTGACCTCTGCCCCCGAGAC---------TTGTGC---CAGCGGGATCCGGGC +s galGal2.chr5 11715633 116 - 56310377 CGGTGCCATCCAGCAATACAATGACATGCTAGCTGAGAAACAGAAGAGGAGTAGCTTCATGAAAAGGTCTTCTGACCAAcgagacctgtgtccccgagac---------ctgtgc---cc--gagaGACA--- +s xenTro1.scaffold_588 533797 98 - 833634 AGGAGGCATGCAGGCATATAGTGATATGCTGCATGAAAAACAAAAAAGAAGTCATTTCATGAAACG---ATCTGATCAG---------------CAAATT---------TTATGT---AG--GAGAATTC--- +s tetNig1.chrUn_random 145481797 91 - 171761319 GACTTCTATTCAACACTATAATAATTTAATAGTTGACAATCGCAACAGGACTGAATTGTCCAAGAGGTG-------------------------CTCAGA---------CGACCA---GC--GGGACACG--- +s danRer2.chr17 30166534 92 - 42274751 CAGCTCCATCCAGCAGTACAATAACTTAATAGTTGACAATCGGAAAAGGCTTCCATTCTCTAAAAGGAT-------------------------CTCGGA---------AGTGCA---GA--GGGAAGTGG-- + +a score=301329.0 +s hg17.chr14 7657408 63 - 106368585 gg---------ccAAGGCGCTGGCTGACGAGAAG--GCGCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGGCCT +s panTro1.chr15 7745550 63 - 106954593 gg---------ccAAGGCGCTGGCTGACGAGAAG--GCGCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGGCCT +s baboon.ENr322_1 324163 63 - 705101 GG---------CCAAGGCACTGGCTGACGAGAAG--GCCCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGGCCT +s rheMac1.SCAFFOLD65194 73660 63 + 139520 gg---------ccAAGGCACTGGCTGACGAGAAG--GCCCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGGCCT +s galago.ENr322_1 374474 72 - 713249 GGGCGGTGCTGCCAAGGCTCTGGCTGATGAGAAG--GCCCTTG-TGCTGGGCAAGGTCATGGAGAACGTGGGCCT +s rn3.chr6 15342275 63 - 147642806 AG---------CTGCGGCTCTGGCAGATGAGAAG--GCGCTGG-CATTGGGCAAGGTGATGGAGGACGCAGGGCT +s mm6.chr12 12400720 63 - 115788303 AG---------CTGCGGCTCTGGCGGATGAGAAG--GCTCTGG-CCCTGGGCAAGGTGATGGAGGACGCAGGGCT +s rabbit.ENr322_1 323803 53 - 557677 -g---------gcgcggggctgg-----gcgcgg--gcgcggg-cggcgggcccgg-gctgccgggcgcggg--- +s cow.ENr322_1 356293 60 - 609512 gg---------ccAAGGCGCTGGCCGACGAGAAG--GCGCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGG--- +s rfbat.ENr322_1 312546 61 - 530160 gg---------ccAAGGCGCTGGCCGAGGAGAAG--GCGCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGGC-- +s elephant.ENr322_1 238254 60 - 422862 gg---------ccAAG---CTGGCCGACGAGAAG--GCGCTGG-TGCTGGGCAAGGTCATGGAGAACGTGGGCCT +s monDom1.scaffold_15016 400111 62 - 2367050 -T---------CCAAGTCACTACCAGACGAAAAG--TCCCTCG-TTCTTGGAAAAGTGATCGAGAATGTCAGCCT +s platypus.ENr322_1 84183 63 - 159352 GT---------CCAAGTCGCTCCCTGATGAGAAG--TCCCTGG-TCCTGGGGAAAGTGATTGAGAACGTGAGCCT +s galGal2.chr5 11715571 62 - 56310377 -T---------CCAAATCACTGCCAGATGAGAAA--TCCCTTG-TCCTGGGAAAAGTGATAGAGAATGTAAGTCT +s xenTro1.scaffold_588 533734 63 - 833634 AG---------CAAAGCCAATCCATGATGAGAAG--TCCCTTG-TTCTTGGAAAAGTTATGGAGAATGTACATTT +s tetNig1.chrUn_random 145481733 61 - 171761319 -----------CCAAACAGCTGTCTGAGGAGAAGTCATCATTTGCTTTTAATAAAATGATGGAAACTCGTGG--- +s danRer2.chr17 30166473 58 - 42274751 -----------CAAAGCCTCCTTCAGATGAGAAG--ACCCTTT-CGTTAGGAAAGATGGTGGAAAATGTAGG--- + +a score=30812.0 +s hg17.chr14 7657375 33 - 106368585 GGTgcccggggtcccg-----ggcgcggggggcg------gcgc +s panTro1.chr15 7745517 33 - 106954593 GGTgcccggggtcccg-----ggcgcggggggcg------gcgc +s baboon.ENr322_1 324130 33 - 705101 GGTGGCCGGGGTCCCG-----GGCACGGGGGGCG------GCGC +s rheMac1.SCAFFOLD65194 73627 33 + 139520 ggtggccggggtcccg-----ggcgcggggggcg------gcgc +s galago.ENr322_1 374441 33 - 713249 GGTGCCGGGGGTGCCC-----GGAGCTGGGGGCG------GCGT +s rn3.chr6 15342245 30 - 147642806 GCCACCAGGGGTGGCG-----GGCGCGGGGGCTG---------C +s mm6.chr12 12400690 30 - 115788303 GCCACCGGGGGTGGCG-----GGCGCAGGGGCTG---------C +s rabbit.ENr322_1 323775 28 - 557677 -----cggcggcggcgCgctgggcgc-ggggctg---------- +s cow.ENr322_1 356257 36 - 609512 GGTggccggcgtgccg-----ggcgcgggcggcg---gcgccgc +s rfbat.ENr322_1 312507 39 - 530160 ggtgcccggggtgccc-----ggcgcgggcggcgtgggcggcgc +s elephant.ENr322_1 238222 32 - 422862 ggc-ggcgtggccgtg-----ggcgcgggcgcgg------gcgc +s danRer2.chr17 30166472 1 - 42274751 -----------T-------------------------------- + +a score=441852.0 +s hg17.chr14 7657325 50 - 106368585 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGG +s panTro1.chr15 7745467 50 - 106954593 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGG +s baboon.ENr322_1 324080 50 - 705101 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGG +s rheMac1.SCAFFOLD65194 73577 50 + 139520 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTggcgg +s galago.ENr322_1 374391 50 - 713249 TTTAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGTGGCGGCGG +s rn3.chr6 15342195 50 - 147642806 TTCAGCATGGACTCGGAGCTGGGCCGTGGCCGCGAGAATGGGGGTGGTGT +s mm6.chr12 12400640 50 - 115788303 TTCAGCATGGACTCGGAGCTGGGCCGTGGCCGCGAGAACGGAGGTGGCGT +s rabbit.ENr322_1 323725 50 - 557677 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGGGAGAAcggcggcggcgg +s cow.ENr322_1 356192 50 - 609512 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGGGAGAAcggtggtggcgg +s canFam1.chr8 6814479 50 - 77374719 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGCGTGGG +s rfbat.ENr322_1 312457 46 - 530160 TTCAGCATGGACTCGGAGCTGAGCCGCAACCGGGAGAAcggcggcg---- +s elephant.ENr322_1 238171 50 - 422862 TTCAGCATGGACTCGGAGCTGAGCCGCAGCCGCGAGAAcggcggcggcgt +s monDom1.scaffold_15016 400069 42 - 2367050 TTCAGCATGGATTCGGAGCTAAGCCGCAACCGAGAGAATGGT-------- +s platypus.ENr322_1 84142 41 - 159352 TTCAGCATGGACTCGGAGTTGAGCCGGAACCGAGAGAACGG--------- +s galGal2.chr5 11715529 42 - 56310377 TTTAGTATGGACTCAGAGCTGAGTCGTAACCGAGAAAACGGC-------- +s xenTro1.scaffold_588 533693 41 - 833634 TTCAGTATGGACTCTGAAATGAGCCGCAATCGTGAAAATGG--------- +s tetNig1.chrUn_random 145481690 43 - 171761319 TTTAGTATGGAGTCTGAGTTGTACCGTAACAGGGACAATGACT------- +s danRer2.chr17 30166430 43 - 42274751 TTCAGCATGGACTCTGAGTTCTGTCGGAATAGGGAAAATGGCT------- + +a score=7979638.0 +s hg17.chr14 7656629 696 - 106368585 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCAGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGTCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGACGGTGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCACGAGCCggaggaggaggacgaggaggaggaggaggaggaggaggagCTGCTACTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s panTro1.chr15 7744771 696 - 106954593 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCGGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGTCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGACGGCGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCACGAGCCggaggaggaggacgaggaggaggaggaggaggaggaggagCTGCTACTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s baboon.ENr322_1 323384 696 - 705101 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTTGTTGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGTGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGAAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCGGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACAGGCGCAGTCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCATGCTCGCAGGCCAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCTGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACAAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGATGGCGACTTCCGCCACCATGAGAGCGACCCGTCGCTGGGCCACGAGCCggaggaggaggacgaagaggaggaggaggaggaggaggagTTGCTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s rheMac1.SCAFFOLD65194 72881 696 + 139520 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTCGTTGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACACCGCCGCCCGTGTCCCCGGGCCGCGGAAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCGGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATTGTGCACAGGCGCAGTCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCATGCTCGCAGGCCAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCTGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACAAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGATGGCGACTTCCGCCACCATGAGAGCGACCCGTCGCTGGGCCACGAGCCggaggaggaggacgaggaggaggaggaggaagaggaggagTTGCTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s marmoset.ENr322_1 313311 695 - 740094 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCTGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATgccccccggcggcacgccgcccccgcagccgccggccAAGAGCAAGTCGTGCGAGTTCTGCGGGAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGTTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCCGCCGACGGCGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCACGAGCCggaggaggaggacgaggaggaagat-aggaggaggaggagCTGCTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s galago.ENr322_1 373695 696 - 713249 CACCTGGACCCGCAC---------CGCCTCAGTGCGGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTTGACCGAGTCATGCGCCTGAATCCCATGGCCATCGACTCTCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---TAGCTCCACACCGCCGCCCGTGTCGCCGGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCACCGCTGCCGCCCATGCCTCCCGGTGGCACGCCACCACCGCAGCCGCCGGCCAAGAGCAAGTCGTGTGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCATGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACACACATGCACAAGGCCGGCTCCCTGGCCGGCCGCTCTGATGACGGGCTCTCGGCTGCCAGCTCCCCGGAGCCTGGCACCAGCGAGCTGACCGGCGAGGGCCTCAAGGCAGCTGACGGCGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCACGAGCCCgaggaggaggacgaggaggaggaggaggaggaggaggagCTGCTACTTGAGAATGAGAGCCGACCCGAGTCGAGC +s rn3.chr6 15341508 687 - 147642806 CACTTGGACCCACAC---------CGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATAGACTCTCCCGCCATGGACTTCTCTCGGCGGCTGCGAGAACTGGCCGGTAA---CAGCTCCACACCGCCGCCCGTGTCCCCAGGCCGTGGCAACCCTATGCACCGGCT------GCTGAACCCTTTTCAGCCCAGCCCCAAGTCCCCGTTCCTCAGCACGCCACCGCTGCCACCCATGCCCACGGGC---ACGCCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTGCGGCAAGACCTTCAAATTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCGGGCTCGCTGGCTGGCCGCTCAGACGATGGGCTCTCGGCCGCCAGCTCCCCAGAGCCCGGCACCAGCGAGCTGCCAGGTGAC---CTCAAAGCGGCCGATGGCGACTTCCGCCACCATGAGAGCGACCCATCTCTGGGACCCGAGCCTgaggacga---cgaggacgaggaggaggaagaagaagagCTGCTGCTGGAGAATGAAAGCCGACCTGAGTCGAGC +s mm6.chr12 12399953 687 - 115788303 CACTTGGACCCACAC---------CGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATAGACTCTCCTGCCATGGACTTCTCCCGGCGGCTGCGAGAACTGGCCGGCAA---CAGCTCCACGCCGCCGCCCGTGTCCCCAGGCCGTGGCAACCCTATGCACCGGCT------GCTGAACCCTTTCCAGCCCAGTCCCAAGTCCCCGTTCCTCAGCACGCCACCGCTGCCACCCATGCCTGCGGGC---ACACCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCATGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCGGGCTCTCTGGCTGGCCGCTCAGACGACGGGCTCTCAGCTGCCAGCTCCCCTGAGCCGGGCACCAGCGAGCTGCCAGGTGAC---CTGAAAGCGGCCGATGGCGACTTCCGCCACCATGAGAGCGACCCATCTCTGGGCCCCGAGCCTgaggacga---cgaggacgaggaggaggaagaagaggagCTGCTGCTGGAGAACGAGAGCCGGCCTGAGTCGAGC +s rabbit.ENr322_1 323029 696 - 557677 CACCTGGACGCGCAC---------CGCCTGAGCGCCGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATGGACTCGCCCGCCATGGACTTCTCGCGGCGGCTGCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCACCCGTGTCGCCAGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCGGCCCCAAGTCCCCGTTCCTCGGCACGCCGCCGCTGCCGCCCATgccccccggcggcacgcccccgccgcagccgccggccAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACGTTCAAGTTCCAGAGCAATCTGATCGTGCACCGCCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCGGGCTCGCTGGCCGGGCGCTCGGACGACGGGCTGTCGGCCGCCAGCTCGCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGACGCGCTCAAGGCGGCCGACGGCGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCCCGAGCCCgaggaggaggacgaggaggaggaggaggaggaggaggagCTGTTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s cow.ENr322_1 355496 696 - 609512 CACCTGGACCCGCAC---------CGCCTCAGCGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGTGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCAcgccgccgctgccgcccatgccccccggtggcacgccgccgccgcagccgccgGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACGTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCTGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGACCGGCGAGGGCCTCAAGGCGGCCGACGGTGACTTCCGCCACCACGAGAGCGACCCTTCCCTGGGCCATGAGCCCgaggaggaggacgaagaggaggaggaggaggaggaggagCTGCTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s canFam1.chr8 6813783 696 - 77374719 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTCGACCGAGTCATGCGCCTCAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCCGTGTCTCCGGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATgccccccgggggcacgccgccgccgcagccgcccgccAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCCGGCGAGGGCCTCAAGGCGGCCGACGGCGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCACGAGCCCgaggaggacgacgaggaggaggaggaggaggaggaggagCTGCTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s rfbat.ENr322_1 311761 696 - 530160 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGGCTTGTCGCCCAGCACCCCAGTGCCTTTGACCGAGTCATGCGCCTGAACCCCATGGCCATTGACTCACCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAA---CAGCTCCACGCCGCCGCCTGTGTCACCGGGCCGCGGCAACCCTATGCACCGGCT------CCTCAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCACCCATGCCCCCCGGTGGCACGCCACCGCCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTGTGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAGCCACACAGGCGAGAAGCCCTATAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACATGAAGACGCACATGCACAAGGCTGGCTCGCTGGCCGGCCGCTCCGACGACGGCCTCTCGGCTGCCAGCTCCCCGGAGCCCGGCACCAGCGAGCTGGCCGGCGAGGGCCTCAAGGCGGCCGATGGCGACTTCCGCCACCACGAGAGCGACCCGTCGCTGGGCCACGAGCCCgaggaggaggaagaggaggaagacgaggaggaggaagagCTGCTGCTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s elephant.ENr322_1 237478 693 - 422862 CACCTGGACCCGCAC---------CGCCTCAGTGCCGAGGAGATGGGACTCGTCGCCCAGCACCCCAGTGCCTTTGACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGAGGCTGCGCGAGCTGGCGGGCAA---CAGCGCCACGCCGCCGCCCGTGTCGCCGGGCCGCGGCAACCCTATGCACCGGCT------CCTGAACCCCTTCCAGCCCAGCCCCAAGTCCCCGTTCCTGAGCAcgccgccgctgccgcccatgccgcccggtggcacgccgccgccgcagcccccgACCAAGAGCAAGTCCTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTGATCGTGCACCGGCGCAGCCACACAGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGGCACATGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCTGCCAGCTCCCCGGAGCCGGGCACCAGCGAGCTGGCCGCCGAGGGCCTCAAGGCGGCCGACGGCGACTTCCGCCAC---GAGAGCGACCCGTCGCTCGGCCACGAGCCCgaggaggaggacgaagaggaggaggaggaggaggaggagCTGCTACTGGAGAACGAGAGCCGGCCCGAGTCGAGC +s monDom1.scaffold_15016 399385 684 - 2367050 CATCTGGACCCACAT---------CGCCTTAGTGCCGAAGAAATGGGGTTAGTTGCCCAGCATCCCAGTGCCTTTGACAGAGTCATGCGTTTGAACCCCATGGCAATCGATTCGCCAGCGATGGATTTCTCCAGGAGGCTCCGAGAGCTGGCGGGAAA---CAACTCGACCCCTCCTCCAGTCTCACCAAACCGCAGCAACCCTATGCATCGCTT------ATTGAACCCCTTTCAGCCAAGCCCTAAATCACCTTTTTTGAGTACCCCGCCACTGCCCCCCATGCCTCCTAGCAGTACTACCCCTCCCCAACCTCAGGCGAAGAGTAAATCCTGTGAATTCTGTGGGAAAACGTTCAAGTTTCAGAGTAATCTCATTGTCCATCGCCGTAGTCACACGGGAGAGAAGCCCTACAAGTGTCAGCTCTGCGACCACGCTTGCTCCCAGGCCAGTAAACTGAAGCGTCATATGAAAACACATATGCACAAAGCCGGCTCCATGACAGGCAGGTCAGATGACGGACTCTCTACCACCAGTTCTCCAGAGCCAGGCACCAGTGAGCTTACTGGGGAGGGGCTGAAATCCAGCGAGGCTGACTTCAGGAAT---GAGAGCGATCCCTCCCTAGGCCACGACAATgaagaagaggaagaggaggaggaggaggaagagga---------ATTGGAGAATGAGAGCCGGCCGGAGTCAAGT +s platypus.ENr322_1 83458 684 - 159352 CACCTGGACCCGCAC---------CGCCTTAGTGCCGAAGAAATGGGGTTAGTCGCCCAACACCCCAGTGCCTTTGACAGAGTTATGCGTTTGAACCCCATGGCAATTGAATCGCCCGCGATGGATTTCTCCCGGAGGCTCCGAGAACTGGCGGGGAA---TAACTCCACCCCTCCCCCAGTCTCACCCAATCGCAGCAACCCTATGCATCGCTT------ACTGAACCCCTTCCAGCCGAGTCCCAAGTCACCTTTTTTAAGCACCCCACCACTGCCCCCCATGCCTCCCAGCAGCACGACCCCTCCCCAACCTCAGGCGAAGAGCAAATCCTGTGAATTCTGTGGGAAAACATTCAAGTTCCAGAGCAATCTCATAGTGCATCGGCGAAGTCACACCGGCGAGAAGCCCTACAAGTGTCAGCTCTGCGACCACGCCTGCTCCCAAGCCAGCAAGCTCAAGCGTCATATGAAAACCCACATGCATAAAGCGGGCTCCATGACGGGCCGGTCGGACGACGGGCTGTCCGCTACCAGCTCCCCTGAGCCGGGCACGAGCGAGCTGACGGGGGAAGGCCTGAAACCTGGGGAGACGGACTTCAGGAAC---GAGAGCGACCCCTCCCTGGGCCATGACAACgaagaggaggaggaggaggaggaggaagaggagga---------gCTGGAGAACGAGAGCAGGCCCGAGTCGAGC +s galGal2.chr5 11714845 684 - 56310377 CATCTGGATCCACAT---------CGCCTTAGTGCCGAAGAAATGGGGTTAGTTGCCCAGCATCCCAGTGCCTTTGACAGAGTTATGCGTTTAAACCCCATGGCAATTGAGTCCCCAGCGATGGATTTCTCCAGAAGGCTTCGAGAGCTGGCAGGAAA---CAGTTCCACCCCTCCGCCAGTCTCGCCCAGTCGCACCAACCCTATGCATCGCCT------GTTGAATCCTTTCCAGCCGAGTCCTAAATCACCTTTTTTGAGCACCCCACCACTGCCCCCCATGCCCCCAAGCAGCACTACGCCTCCCCAGCCTCAGGCCAAGAGTAAGTCCTGCGAATTCTGTGGGAAAACCTTCAAGTTCCAGAGCAACCTTATCGTCCACCGGCGTAGTCACACAGGAGAAAAGCCCTACAAATGTCAGCTATGTGACCATGCTTGCTCCCAGGCCAGCAAGCTAAAGCGTCACATGAAAACGCATATGCATAAAGCTGGCTCCATGACAGGCAGGTCAGACGATGGACTGTCCACCACGAGTTCTCCTGAGCCAGGCACGAGCGAGCTCACTGGAGAGGGACTGAAATCCAGTGAGACAGACTTCAGGAAT---GAGAGCGATCCCTCCCTGGGCCATGACAATgaagaagaggaagaggaggaggaggaagaagaaga---------GTTGGAAAATGAGAGCAGGCCAGAGTCAAGC +s xenTro1.scaffold_588 533003 690 - 833634 CATCTGGACCCGCAT---------CGCCTTAGTGCCGAAGAAATGGGGTTAGTTGCCCAGCATCCTAGTGCCTTTGACAGAGTTATGCGCTTAAACCCCATGACAATTGAATCTCCAGCAATGGATTTTTCCCGAAGGCTAAGAGAACTAGCAGGGAA---CAACTCCACTCCACCACCAGTGTCACCGAACCGCGGCAATCCTATGCATCGCCT------GTTAAACCCTTTTCAGCCAAGCCCTAAGTCACCTTTTATTAGTACACCACCATTGCCACCCATGCCCCCCAGCAGTACTACTCCACCACAGACCCAGGCAAAGAGCAAATCCTGTGAATTCTGTGGGAAAACCTTCAAGTTCCAGAGTAATTTAATAGTCCACCGTCGCAGTCACACGGGAGAAAAACCTTATAAGTGTCAGCTGTGTGATCATGCATGTTCCCAAGCAAGCAAGTTAAAACGTCACATGAAAACACATATGCACAAAGCTGGTTCAATGACTGGAAGGTCTGATGATGGACTGTCTGCTACTAGCTCACCAGAGCCAGGCACAAGTGATTTAACAGGAGAGGGTGTAAAATCCAGTGAGACAGATTTTAGAAAT---GAAAGTGATCCATCTTTAGGCCATGAAAATgaagaagaagaggaagaagaagaagaggaggaggaggagga---aATAGAGAATGAAAGTAGGCCAGAGTCAAGC +s tetNig1.chrUn_random 145481030 660 - 171761319 CATCTTGACTCCCACAGGCTAGAATGCCTTAGCACAGAAGAAATGGGTCTGATCTCGCAGCACCCCAGTGCCTTTGAAAAGGTGATGCGTCTTACACCCATGTCTATGGAGTCCCACTCAATGGACTTCTCCAGGAGGCTACGTGAATTGGCTGGCAATACCAACAGTACAACACCACCGCTGTCACCAAGCCGGGCGAACCATATGCACCGACTTATTAACCCCAACCCCTTTCAAATGGGGAGAAAGTCACCCTTTCTGTGCACCCCTCCCCTGCCGCTAGTTCCCACAAACAGCACCAGCCCTCCGCAGACACAGAACAAAATCAAATCCTGTGAGTTCTGTGGAAAAACCTTCAAGTTTCAAAGCAACTTGGTGGTGCATCGACGTAGCCACACTGGAGAAAAACCATACAAGTGCCAGCTGTGTGACCATGCATGTGCTCAGGCAAGCAAACTGAAACGCCACATGAAGACCCACATGCACAAACCTGGTTCTTTGGCTGGGCGCTCTGAGGATGGACTATCTACTACAAGCTCCCCAGAGCCAGGCACAAGCGA------------GTGCATAAAAAACCACAATGGTGACTTCCTagta---gaagg---------------------------aaacgaagaggaagaagaggaggaggagga------------aCTTGAGAATGAGAGTCGACCAGAATCAAAT +s danRer2.chr17 30165743 687 - 42274751 CATTTAGATCCCCATCGCCTGGAACGCCTTAGCGCAGAGGAAATGGGTTTAATCTCCCAGCATCCCAGTGCCTTCGAAAGAGTGATGCGCATGACACCCATGGCCATGGAGTCCCAGTCCATGGATTTCTCCCGCCGATTGAGAGAGCTTGCTGGAAA---CAACAATTCCACTCCACCATTGTCACCGAGCCGTGCTAACCCTATGCATCGCCTTCTCAATCCCAACCCCTTTCAGCCCAGCCCGAAATCACCCTTTCTGAGCACCCCTCCACTGCCTCCCATGCCCCCTAACAGCACCACCCCGCCACAGACACAGGGCAAGTCGAAATCTTGCGAGTTCTGTGGCAAGACCTTCAAGTTTCAGAGTAATCTGGTTGTTCATCGGCGAAGCCACACAGGCGAGAAACCTTACAAGTGCCAATTGTGTGACCACGCTTGTTCTCAAGCGAGCAAATTAAAACGCCACATGAAGACCCACATGCACAAATCTGGTTCCATGACAGGGCGCTCTGACGATGGCCTGTCCACCACCAGCTCACCTGAGCCAGGCACTAGTGACGTCACTGGGGAGGGTATAAAAAATCGGGATGGTGATTTCAAAGGC---GAGGGCA---------TGCTCCAAGACAATgaagaggaggaggaagaggaagaggaggagga------------gTTGGAAAATGAAAGCAGGCCTGAGTCAAAC + +a score=616570.0 +s hg17.chr14 7656579 50 - 106368585 AGGGCCGCCTGCCGGGCACGCCGCCTCTCTTCAGTCCCCCGCCGCGCCAC +s panTro1.chr15 7744721 50 - 106954593 AGGGCCGCCTGCCGGGCACGCCGCCTCTCTTCAGTCCCCCGCCGCGCCAC +s baboon.ENr322_1 323334 50 - 705101 AGGGCCGCCTGCCGGGAACGCCGCCTCTCTTCAGCCCCCCGCCGCGCCAC +s rheMac1.SCAFFOLD65194 72831 50 + 139520 AGGGCCGCCTGCCGGGCACGCCGCCTCTCTTCAGCCCCCCGCCGCGCCAC +s marmoset.ENr322_1 313261 50 - 740094 AGGGCCGCCTGCCGGGAACGCCGCCGCTCTTCAGCCCCCCGCCGCGCCAC +s galago.ENr322_1 373645 50 - 713249 AGGGCCGCCTGCCTGGTACGCCGCCACTCTTCAGCCCACCGCCACGCCAC +s rn3.chr6 15341458 50 - 147642806 AGGGCCGCCTGCCCGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCAT +s mm6.chr12 12399903 50 - 115788303 AGGGCCGCTTGCCAGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCAT +s rabbit.ENr322_1 322979 50 - 557677 AGGGCCGCCTGCCCGGCACGCCGCCGCTCTTCAGCCCGCCGCCGCGCCAC +s cow.ENr322_1 355446 50 - 609512 AGGGCCGCCTGCCTGGCACGCCGCCGCTCTTCAGCCCGCCGCCGCGCCAC +s canFam1.chr8 6813733 50 - 77374719 AGGGCCGCCTGCCCGGCACGCCGCCGCTCTTCAGCCCGCCGCCGCGCCAC +s rfbat.ENr322_1 311711 50 - 530160 AGGGCCGCCTGCCCGGCACGCCGCCGCTCTTCAGCCCGCCGCCGCGCCAC +s shrew.ENr322_5 1242 49 - 18853 AGGGCCGC-TGCCCGGCACGCCGCCCCTCTTCAGCCCGCCGCCGCGCCAC +s elephant.ENr322_1 237428 50 - 422862 AGGGCCGCCTGCCTGGCACGCCGCCGCTCTTCAGCCCGCCGCCGCGCCAC +s monDom1.scaffold_15016 399335 50 - 2367050 AGGGCCGGCTCCCCAACACTCCCCCACTTTTCAGCCCACCGCCCCGTCAC +s platypus.ENr322_1 83408 50 - 159352 AGGGTAGGATCCCCAACACCCCTCCACTCTTCAGCCCTCCGCCTCGTCAT +s galGal2.chr5 11714795 50 - 56310377 AGGGTCGGCTCCCAAACACGCCTCCACTATTCAGCCCACCACCTCGTCAT +s xenTro1.scaffold_588 532953 50 - 833634 AGGCTCGGCTCCCAAACACACCCCCACTTTTCAGCCCACCCCCACGCCAC +s tetNig1.chrUn_random 145480980 50 - 171761319 AGAACCGACTCCCCAACATGCCTCCGTTTGTTAGCCCTCCTCCCCGCCAC +s danRer2.chr17 30165693 50 - 42274751 AAAACCGTATCCCCAATACGCCTCCCTTTGTCAGCCCCCCTCCACGCCAT + +a score=3481803.0 +s hg17.chr14 7656300 279 - 106368585 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCGCGGCTCACCATCCCGCCGCCG-------CTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCGGG--CTTCGGCG +s panTro1.chr15 7744442 279 - 106954593 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCGCGGCTCACCATCCCGCCGCCG-------CTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCGGG--CTTCGGCG +s baboon.ENr322_1 323055 279 - 705101 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCACGGCTCACCATCCCGCCGCCG-------CTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCGGG--CTTCGGCG +s rheMac1.SCAFFOLD65194 72552 279 + 139520 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCACGGCTCACCATCCCGCCGCCG-------CTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCGGG--CTTCGGCG +s marmoset.ENr322_1 312982 279 - 740094 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCGCGGCTCACCATCCCGCCGCCG-------CTCGGGCCAGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCGGG--CTTCGGCG +s galago.ENr322_1 373366 279 - 713249 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCATGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACACCGCGGCTCACCATCCCGCCGCCA-------CTCGGGCCTGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------AGGCCCCATCCTACGCGA--CCACCCGGG--CTTCGGCG +s rn3.chr6 15341179 279 - 147642806 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGTAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGCAACA----------TGCGCAGAACACGCATGGCTTCCGCATCTACCTGGAGCCCGGGCCCGCCAGCACCTCGCT--CACGCCCAGGCTCACCATCCCGCCGCCG-------CTCGGGCCGGAGGCCGTGGCGCAGTCCCCACTCATGAATTTCCTCGGGGACAGCAATCC-----TTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCCGG--CTTCGGAG +s mm6.chr12 12399624 279 - 115788303 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGCAGCA----------CGCACAGAACACACATGGCTTCCGAATCTACCTGGAGCCTGGGCCGGCCAGCACCTCGCT--CACGCCCAGGCTCACCATCCCGCCACCG-------CTCGGGCCGGAGACCGTGGCGCAGTCCCCACTCATGAATTTCCTGGGGGACAGCAATCC-----TTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCTGG--CTTCGGTG +s rabbit.ENr322_1 322700 279 - 557677 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCACCAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCGCGGCTCACCATCCCGCCGCCG-------CTGGGGCCCGAGGCCGTGGCGCAGTCGCCCCTCATGAACTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGCGA--GCACCCGGG--CTTCGGCG +s cow.ENr322_1 355167 279 - 609512 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAACA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCGCGGCTTACCATCCCGCCGCCG-------CTGGGACCCGAGGCCGTGGCCCAGTCCCCACTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCAGG--CTTCGGTG +s canFam1.chr8 6813454 279 - 77374719 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCT--CACGCCGCGGCTCACCATCCCGCCGCCG-------CTGGGACCCGAGGCCGTGGCCCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCGGG--CTTCGGCG +s rfbat.ENr322_1 311432 279 - 530160 GT---AAA-GATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCATGGCTTCCGCATCTACCTGGAGCCAGGGCCGGCCAGCAGCTCACT--CACGCCACGGCTCACCATCCCGCCGCCG-------CTCGGGCCGGAGGCCGTGGCCCAGTCCCCACTCATGAATTTCCTGGGCGACAGCAACCC-----ATTC---AATCTG-CTGCGCATGAC-------------GGGCCCCATCCTGCGGGA--CCACCCAGG--CTTCGGCG +s shrew.ENr322_5 960 282 - 18853 GT---AAAAGACGAGCCTTCCAGCTACATTTGCACGACATGCA-GCAGCCCTTCACCAGCGCGTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGTTTCCGCATCTACCTGGAGCCGGGCCCGGCCAGCAGCTCGCT--CACGCCGCGGCTGACCATCCCGCCGCCG-------CTGGGGCCCGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCC-----CTTC---AAGCTGGCTGCGCATGAC-------------GGGGCCGCTGCTGCGGGA--CCACCCGGGGCTTTCGGCG +s elephant.ENr322_1 237149 279 - 422862 GT---AAA-GACGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCACCAGCGCCTGGTTCCTGCTGCAGCA----------CGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCGGGCCCGGCCAGCAGCTCGCT--CACGCCGCGCCTCACCATCCCGCCGCCG-------CTCGGGCCCGAGGCGGTGGCCCAGTCGCCGCTCATGAATTTCCTGGGTGACAGCAACCC-----CTTC---AACCTG-CTGCGCATGAC-------------GGGCCCCCTCCTGCGCGA--GCACCCGGG--CTTCGGAG +s monDom1.scaffold_15016 399056 279 - 2367050 GT---AAA-GATGAGCCTTCAAGCTATATTTGCACAACATGCAAGCAACCTTTTAACAGCGCCTGGTTCTTGCTTCAACA----------TGCCCAAAACACACATGGATTCCGCATCTATTTGGAAACAAGCCCTTCAAACAGTTCCCT--TACTCCACGGATCACCATCCCTCCTCCT-------CTGGGACCAGAGGCTGTTGCACAGTCCCCGCTGATGAACTTCCTCGGAGATAACAACCC-----TTTT---AGTCTC-TTACGAATGAC-------------AGGCCCCATCCTGCGTGA--CCACCCCGG--CTTTGGCG +s platypus.ENr322_1 83129 279 - 159352 GT---AAA-GATGAGCCTTCAAGCTATATTTGCACAACATGCAAGCAGCCTTTTAATAGCGCTTGGTTCCTGCTCCAGCA----------TGCCCAGAATACCCATGGATTCCGCATCTACCTGGAAACCAGTCCGTCCAACAGTTCCCT--TACTCCTCGCATCACCATCCCTCCTCCT-------CTGGGACCGGAGGCTGTTGCACAGTCCCCGCTGATGAATTTCCTGGGAGATAACAACCC-----CTTC---AGTCTC-CTGCGGATGAC-------------GGGCCCCATCCTGCGTGA--TCATCCCGG--CTTCGGTG +s galGal2.chr5 11714516 279 - 56310377 GT---AAA-GATGAGCCTTCAAGCTATATTTGCACAACATGCAAGCAGCCTTTTAATAGCGCTTGGTTCTTGCTTCAGCA----------TGCCCAGAACACACATGGATTCCGCATCTACCTGGAAACAAGCCCTTCCAACAGTTCCCT--TACTCCACGCATCACCATCCCTCCTCCT-------CTGGGACCAGAGACTGTTGCACAGTCCCCGCTGATGAATTTCCTTGGAGACAACAACCC-----TTTT---AATCTT-CTGCGGATGAC-------------AGGACCCATTTTGCGTGA--ACATCCTGG--CTTTGGTG +s xenTro1.scaffold_588 532674 279 - 833634 GT---AAA-GATGAGCCTTCAAGCTATATTTGCACAACATGCAAGCAGCCTTTTAACAGCGCATGGTTCCTGCTTCAGCA----------TGCTCAAAATACACATGGATTTCGTATCTACCTGGAAACAAGCCCATCTAGTAACTCTCT--TACTCCACGTATCACTATCCCTCCACCT-------CTGGGACCGGAGACTGTTGCACCATCCCCTCTGATGAATTTCCTTGGGGACACTAATCC-----CTTC---AACCTT-TTAAGAATGAC-------------AGGACCTATTCTACGTGA--TCACCCAGG--CTTTGGTG +s tetNig1.chrUn_random 145480695 284 - 171761319 GTCGTAAA-GATGAGCCTTCAAGCTATATATGTACGACATGTAAGCAGCAGTTTTCCAACGCCTGGTTCCTGCTACAGCA----------CGCTCAGAACACCCATGGCATTCGCATTTACCTGGAGTCAGATCCTTCTAACACTGCCCT--AACGCCACGCATTACTATGCCTCCACAA-------ATTGGTAATGACTGCATCCCTCATTCCCCCTTGATCAACTTTCTTGGGGAAAACAACCC-----CTTC---CAGCTC-CTGCGAATGAC-------------AGGCCCAGTAAGTCGAGAGCCTGCCCCAG--CTTTTATT +s danRer2.chr17 30165607 279 - 42274751 GT---AGA-GATGAACCCTCAAGTTACATATGCACAACGTGCAAACAACCCTTTTACAACGCCTGGTTCCTTCTGCAGCANNNNNNNNNN-----AAAAC-----CGTATCCCCAATACGCCT----------CCCTTTGTCAGCCCCCCTCCACGCCATCATTTAGATCCCCATCGCCTGGAACGCCTTAGCGCAGAGGAAATGG-------------GTTTAATCTCC-------CAGCATCCCAGTGCCTTCGAAAGAGTG-ATGCGCATGACACCCATGGCCATGGAGTCCCAGTCCATGGAT--TTCTCCCGC--CGATTGAG + +a score=1849402.0 +s hg17.chr15 41673708 149 + 100338915 ATGGCTGGTCCCTTCTCCCGT---CTGCTGTCCGCCCG----CC------------CGGGACTCAGGCTCCTGGCTTTG--GCCGGAGCGGGGTCTCTA-GCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s panTro1.chr16_random 12462177 149 + 32210112 ATGGGTGGTCCCTTCTCCCGT---CTGCTGTCCGCCCG----CC------------CGGGACTCATGCTCCTGGCTTTG--GCCGGAGCGGGGTCTCTA-GCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCGGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s baboon.ENr233_1 275767 149 + 766046 ATGGCTAGTCCCTTCTCCCGT---CTGCTGTCCGCCCG----CC------------CGGGAATCAGGCTCCTGGCTTTG--GCCGGAGCGGGGTCTCTA-GCCGCTGGGTTTCTGCTGCGACCGGAACCTGTACGAGCGGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s rheMac1.SCAFFOLD51386 39935 149 - 50003 ATGGCTGGTCCTTTCTCCCGT---CTGCTGTCCGCCCG----CC------------CGGGAATCAGGCTCCTGGCTTTG--GCCGGAGCGGGGTCTCTA-GCCGCTGGGTTTCTGCTGCGACCGGAACCTGTACGAGCGGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s marmoset.ENr233_1 268074 149 + 638869 ATGGCTGGTCCCTTCTCCCGT---CTGCTGTCTGCCCG----CC------------CGGGACTCAGGCTCCTGACTTTG--GCCGGAGCGGGGTCTCTA-GCCGCTGGCTTTCTGCTCCGACCGGAACCTGTACGAGCGGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s galago.ENr233_1 224810 146 + 677616 ATGGCTGGTCCCTTCTCCCGT------CTGTCTGCACG----CC------------CAGGACTCAGGCTCCTGGCTTTG--GCCGGAGCTGGGTCTCTA-GCCGCTGGTTTTCTGCTCCGCCCGGAACCTGTACGAGCCGCTA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s rn3.chr3 108059196 152 + 170969371 ATGGCTGGTCCCTTCTCCCGT---CTGCTGTCTGCCCG----CC------------CCGGACTCAAGCTCCTGGCTTTG--GCTGGAGCTGGGTCTCTC-GCCGCCGGGATTCTGCTCCGTCCGGAATCTGTACGAGCGGCCACCGGTGAACGGA------GGAGACTGTATCCCCCGAG +s mm6.chr2 120872699 152 + 181764313 ATGGCTGGTCCCTTCTCCCGT---CTGCTGTCTGCCCG----CC------------CTGGACTCAGGCTCCTGGCTTTG--GCTGGAGCTGGGTCTCTC-ACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGA------GGAGACTGTATCCCCCGAG +s rabbit.ENr233_1 252387 149 + 590291 ATGGCTGGTCCCTTCTCCCGT---CTGCTGTCTGCCCG----CC------------CGCGGCTCGGGCTCCTGGCTTTG--GCCGGAGCTGGGTCTCTA-GCCGCTGGGTTTCTGCTCCGCCCGGAACCTGTTCGAGCAGCCA---GCGAACGAA------GGAGGCTGTATCCCCCAAG +s cow.ENr233_1 287506 149 + 683299 ATGGCTGGTCCCTTCTCTCGT---CTGCTGTCTGCCCG----CC------------CCGGGCTCAGGCTCCTGGCTTTG--GCTGGAGCTGGTTCTCTC-GCCGCTGGGTTTCTACTCCGATCGGAACCTGTTCGAGCCGCCA---GTGAACGGC------GGAGGCTGTATCCCCCGAG +s canFam1.chr30 13349240 149 + 43165425 ATGGCTGGTCCCTTCTCTCGT---CTGCTGTCCGCGCG----CC------------CGGGGCTCAGGCTCCTAGCTTTG--GCTGGAGCTGGGTCTCTA-GCCGCTGGGTTTCTGCTCCGCCCGGAACCTGTAAGAGCCGCCA---GTGAACGAC------GGAGGCTGTATCCCCCAAG +s rfbat.ENr233_1 232312 149 + 554556 ATGGCCGGTCCTTTCTCTCGT---CTACTGTCCGCCCG----CC------------CGGGGCTCAGGCTCCTGGCTTTG--GCTGGAGCTGGGTCTCTA-GCTGCTGGGTTTCTGCTCCGCCCGGAACCTGTACGAGCCGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s shrew.ENr233_9 13897 149 + 18972 ATGGCAGGTCCCTTTTCTCGT---CTGCTATCTGCCCG----CC------------CGAGGCTCGGGCTCTTAGCTCTG--GCCGGAGCTGGGTCTCTA-GCCGCTGGGTTTCTGCTCCGCCCGGAACCTTTACGAGCTGCCA---GTGAACGAC------GGAGGCTCTATCCCCCGAG +s armadillo.ENr233_1 235169 149 + 483679 ATGGCTGGTCCCTTCTCCCGC---CTGCTGTCCACCCG----CC------------CGGGGCTCAGGCTCCTGGCTTTG--GCTGGAGCTGGATCTCTA-GCCGCTGGGTTTCTGCTCCGCCCGGAACCTGTGCGAGCCGCCA---GTGAACGAC------GGAGGCTGTATCCCCCGAG +s tenrec.ENr233_19 1520 149 - 5596 ATGGCTGGTCCCTTCTCCCGC---CTGCTGTCTGCCCG----CC------------CAGGGCTCAAGTTTGTGGCTTTG--GCCGGAGCTGGATCTCTA-GCCGCCGGGTTTCTGCTTCGCCCGGAACCTGTGCGAGCCGCTG---TTGAACGAC------GGAGGCTCTATCCTCCGAG +s monDom1.scaffold_15056 2404279 149 - 4736853 ATGGCTAGTTCCTTCTCCCGA---TTACTCTCTGCTCG----CC------------CGGGACTCGGGCTTCTTGCTGTG--GCTGGCGCAGGGTCTCTG-GCTGCTGGGTTCCTGCTCCGCCCTGACCCACTACGAGCCGCTG---GCGAGCGAA------GAAGGCTGTACCCACCCAG +s galGal2.chr10 215477 162 - 20909726 GGGGCTGCTCTCTGCTCCCATGCAATGCCAGCAGCTCT----CTTTGTGGGGACAGCATGGCTCTCCCTGCCCACCCT---GCTGCGG--GGGTCTCCATAGGGCAGGGGCACCACT------GGGGCCTGGAGTGGATGACA---GTTGATGGCCGCTCAGCAGCACTCACTGCCCTCA +s tetNig1.chrUn_random 25826102 143 + 171761319 ATGGCGAGCAGCTTCTCCAGA---CTTCTGACCTCCAGAAACCT------------CCGGA----------TGGCGTCGCTGCTGGGG--GGCTCGCTC-ACGGCCGGGGTCCTGCTGCAGCGGCACCATGTCGGCGCCGACG---GCCCCACAC------GGAGGCGGTACCCCGCCAG + +a score=1872217.0 +s hg17.chr15 58659665 89 - 100338915 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTATGA +s panTro1.chr16 59853104 89 - 101535987 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTATGA +s baboon.ENr233_1 484755 89 - 766046 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTCTGA +s rheMac1.SCAFFOLD51386 4555 89 + 50003 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTCTGA +s marmoset.ENr233_1 365317 89 - 638869 GTCGAAGTACAGCCTGGGGCCTCTGGGACTGGTCACAACCTTCCTGGTCCCTGGTATTGACAATCAGCTTCCTTGACCACCTGCTCTGA +s galago.ENr233_1 447153 89 - 677616 GTCGAAGCACAGCTTCGGGTCTCCAGGACTTGTCACAACCTTCCTGGGATCTGGCACTGACCATTAGCTTCCTTGTCCACCTGCTATCA +s rn3.chr3 62905043 89 - 170969371 GTCGAAGCTCAGCCTGGGGTCTCTGTGACTGGTTCCATGCTTCCTGGGCTCTGACACTAACCATCAGCTTTTTTGGCCACCTATTATAA +s mm6.chr2 60886399 89 - 181764313 GTCGAAACTCAGCCTGGGGTCTCTACGACTGGTTCCAAGCCTCCTGGGCCCTGGCATTGCCCGTCAGCATTTTTGGCCACCTATTATGA +s rabbit.ENr233_1 332689 89 - 590291 GTCGAAACACAGCCAGGGGCCTCCAGGACTGGTTACAAGCCTCCTGGGCCCTGTCATTGACCATCAGCTTCCTTGGCCACCTTCTCTGA +s cow.ENr233_1 390540 89 - 683299 GTCGAAGCACAGCCTGGGGTCTCCAGGACTGGTCACAACCCTCCTGGGCCCTGGCATTGACCATCTGCTTCCTTGGCAATCTGCTATGA +s canFam1.chr30 29810975 89 - 43165425 GTCGAAGCACAGCCTGGGGCCTTCAGGACTGGTCACAACCCTCCTGGGCCATGGCATTGACCATCTGCTTCCTTGGCAACCTGATATGA +s rfbat.ENr233_1 316923 89 - 554556 ATCGAAGCACAGCCTGGGGCCTCCAGAACTGGTCACGACCTTCCTGGGCCCTGGTATTAACCATCTGCTTCCTTGGCAACCTGCTATGA +s shrew.ENr233_15 34275 86 + 34619 GTCGAAGCACAGCCTGGGGCCTCCAA---TGGCCACGACCCTTCTGGGCCCTTGCATTGACCATCTGCTTCCTCAGCAACCTGCTATGA +s armadillo.ENr233_1 242733 89 - 483679 GTCGAAGCACAGCCTGGGCCCTCCAGGACTGGTCTCAGCCTTCCTGGGCTCTGGCACTGACCATCTGCTTCCTTGTCCACTTGCTCTGA +s tenrec.ENr233_15 12487 89 - 12988 GTCGAAGTACAGCCTCCGGCCTCCAGGACTGGCCACAGCTCTCCTGGGCCTTAGCATCGACCATATACCTCCGTGGCCAACTCTTCTGA +s monDom1.scaffold_15056 2326803 89 + 4736853 GGCGTAACACAGCTTGGGGCCTCCAGGAACAGACAGTTTCCTTCTGGACCCCAACATTGATTATCTTCCTACTTAGCAGCTTACCCTGA +s platypus.ENr233_14 548 88 - 1028 GTCGAAGTGCAGCCAGTATGCCTCCCGCGTGGTCGCCGTCCCCGTGGGTCCTCGCCCTGACCATCGGTCTGCTTGGTT-TCGGGGCCGA + +a score=221644.0 +s hg17.chr15 41826029 40 + 100338915 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCG--------GGTGTGGCGC------ +s panTro1.chr16 41735415 40 + 101535987 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCG--------GGTGTGGCGC------ +s baboon.ENr233_1 405108 40 + 766046 ATGCGCCTTCGCCGCCTTGCGCTATTCCCG--------GGCGTGGCGC------ +s rheMac1.SCAFFOLD76070 11415 40 + 30364 ATGCGCCTTCGCCGCCTTGCGCTATTCCCG--------GGCGTGGCGC------ +s marmoset.ENr233_1 324800 40 + 638869 ATGCGCCTCTGCCGCCTAACGCTGTTCCCG--------GGTGTGGCGC------ +s galago.ENr233_1 293301 40 + 677616 ATGCGCCTCCGCCGCCTAACCCTGGTCCGG--------GGCGTGGCGC------ +s rn3.chr3 108117268 40 + 170969371 ATGCGCTTCAGCTGCCTTGCGCTGCTCCCG--------GGCGTGGCGT------ +s mm6.chr2 120927888 40 + 181764313 ATGCGCTTCAGCTGCCTAGCTCTGCTCCCG--------GGCGTGGCGC------ +s rabbit.ENr233_1 318514 31 + 590291 ATGC---------GCCTAGCGATGTTTCCC--------GGCGTGGCGT------ +s cow.ENr233_1 334343 40 + 683299 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCA--------GGCCTGGCGC------ +s canFam1.chr30 13397631 40 + 43165425 ATGCGCCCCCGCTGCCGAGCGCTGCTCCCG--------GGCGTGGCGC------ +s rfbat.ENr233_1 274419 40 + 554556 ATGCACCTCCGCCGCCTAGCGCTGTTCTTC--------GGTGTGGAGC------ +s shrew.ENr233_15 21613 39 - 34619 atgcgcctccgc-gcctagcgctgttcccc--------ggcgtggccc------ +s armadillo.ENr233_1 313470 40 + 483679 ATGCGCCTCCCTTGCCTAGCGCTGTTCCCG--------GTCGTGGCGC------ +s galGal2.chr10 220607 42 - 20909726 gggcggc------gcggAGCAACGGGTCCGGGAGTAACGGAGTGACGG------ +s xenTro1.scaffold_358 516555 17 - 1257219 TTCTTCC------------------TCCTG--------GCTGT----------- +s tetNig1.chrUn_random 25833237 42 + 171761319 --GGACCAGCAGAGCTCACC--CGCTGCGG--------GCTACGATGCTAGCGC +s fr1.chrUn 97210623 31 - 349519338 TAGTACCGAAAAAG---------------A--------GCTACGATGCTCAAGC + +a score=1052677.0 +s hg17.chr15 41826069 127 + 100338915 TGCTTCTTGCCG---CG---GCCC---GCCTCGCCGCTGCC---------------TCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGC--G-GGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG +s panTro1.chr16 41735455 127 + 101535987 TGCTTCTTGCCG---CG---GCCC---GCCTCGCCGCTGCC---------------TCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGC--G-GGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG +s baboon.ENr233_1 405148 127 + 766046 TGCTTCTCGCCG---CG---GCCC---GCCTCGCCGCTGCC---------------TCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCGTCTCCGACACGGGCTCTGC--G-GGCCTCATGCTCGTGGAGTTCTTCGCCCCCTG +s rheMac1.SCAFFOLD76070 11455 127 + 30364 TGCTTCTCGCCG---CG---GCCC---GCCTCGCCGCTGCC---------------TCCGATGTGTTAGAACTCACGGACGACAACTTCGAGAGTCGCGTCTCCGACACGGGCTCTGC--G-GGCCTCATGCTCGTGGAGTTCTTCGCCCCCTG +s marmoset.ENr233_1 324840 127 + 638869 TGCTTCTTGCCG---CG---GCCC---GCTTAGCCGCTGCC---------------TCCGACGTGCTGGAACTCACGGACGACAACTTCGAGAGTCGCGTCTCTGACACGGGATCTGC--G-GGCCTCATGCTTGTCGAGTTCTTCGCCCCCTG +s galago.ENr233_1 293341 130 + 677616 TGTTTCTCACGGGTCTC---GCCG---GTCTCGCTGCTGCC---------------TCCGATGTGCTGGAACTCACGGACGACAACTTCGAGAGTCGCGTCTCCGATACCGGGTCCGC--G-GGCCTCATGCTGGTCGAGTTCTTTGCCCCCTG +s rn3.chr3 108117308 142 + 170969371 TGCTGctcgcct---cg---gccc---tcctcgcctccgccctcctcgcctccgccTCAGACGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCAGC--T-GGGCTCATGCTAGTCGAGTTCTTCGCCCCATG +s mm6.chr2 120927928 127 + 181764313 TGCTGCTCGCCT---CG---GCCC---GTCTCGCCGCCGCC---------------TCCGATGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCGGC--G-GGGCTCATGCTAGTCGAGTTCTTCGCCCCCTG +s rabbit.ENr233_1 318545 127 + 590291 TGCTTCTCGCCG---CA---GCCC---GCCTCGCCGCTGCC---------------TCCGACGTCCTGGAACTCACAGACGACAACTTCGAGAGTCGCATCACCGACACGGGCTCTGC--T-GGCCTCATGCTCGTCGAGTTCTTCGCCCCTTG +s cow.ENr233_1 334383 127 + 683299 TGCTCCTCGCCG---CG---GCCC---GCCTCGCTGCTGCC---------------TCCGATGTGCTGGAACTCACGGACGACAACTTCGAGAGTCGCATCACCGACACGGGCTCTTC--T-GGCCTCATGCTTGTCGAGTTCTTCGCCCCCTG +s canFam1.chr30 13397671 127 + 43165425 TGCTTTTCGCCG---CG---GCCG---GTCTCGCCTCTGCC---------------TCCGACGTGCTGGAACTCACTGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGC--G-GGCCTCATGCTCGTCGAGTTCTTCGCTCCCTG +s rfbat.ENr233_1 274459 127 + 554556 TCCTTCTCATCA---CG---GCCT---GCCTTGCAGCTGCA---------------TCCGACGTGCTGGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGC--G-GGCCTCATGCTTGTTGAGTTCTTCGCCCCCTG +s shrew.ENr233_15 21652 127 - 34619 tgcttttcgccg---cg---gccc---gcctcgTTGCTGCT---------------TCCGACGTGCTGGAACTCACGGACGACAACTTCGAGAGTCGCGTCTCGGACACGGGCTCCGC--G-GGCCTCATGCTGGTCGAGTTTTTCGCCCCCTG +s armadillo.ENr233_1 313510 127 + 483679 TGCTTCTCGCCG---CG---GACC---GCCTCGCCGCTGCC---------------TCCGATGTGCTGGAACTCACGGATGACGACTTCGAGGATCGCATCGGCGACACGGGCTCTGC--G-GGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG +s galGal2.chr10 220649 114 - 20909726 CGGAGCGAGCCG---CG---GCCC---G-------GCAGCC---------------TCGGTTAT-CTGAAGGCGGCGGGTGG-------GAGGAAGGCGTCCTCCTTTTGAGCAGAGCCTG-GTGCTGCTGCTCGGACAGAGCAGCGCCCTTCG +s xenTro1.scaffold_358 516572 111 - 1257219 -------CACCG---CC---GGCA---CTCAGGCCGCAGGT---------------TCAGACGTCCTGGATCTCACTGACGATAACTTTGAAAGCACCGT----------GTCTCAGC--ACAGCATCCTGCTAGTGGAATTCTTCGCTCCCTG +s tetNig1.chrUn_random 25833282 121 + 171761319 TGCTTTTGGCGG---CGCTCGCCG---GCTTCACGCAGGCC---------------AGCGATGTGCTGGAGTTCACGGATAACGATTTCGAAAGTAAAATC---------GGAGACCA--C-GAAATCATTCTTGTGGAGTTTTTCGCACCTTG +s fr1.chrUn 97210657 124 - 349519338 TGCTTTTAGCAG---CGCTCACCG---GCTTCACGCAGGCC------------GCCAGTGATGTGCTGGAGTTCACGGATAACGATTTCGAAAGTAAAATC---------GGAGACCA--T-GAAATTATTCTTGTGGAGTTTTTCGCACCCTG +s danRer2.chr16 26031109 124 + 42763181 TGATCTGTGCTG---TGCTGACTGTGTGGCTCGTGGAGGGC---------------AGCGATGTGCTGGAGCTCGGAGATTCTGACTTTGACCGGAGCGCA---------GGCATGCA--T-GACACTCTGCTAGTGGAGTTCTTCGCACCTTG + +a score=813756.0 +s hg17.chr16 142908 95 + 88827254 A---TGTCTCTGACCAAGACTGAGAGGACCATCATTGTGTCCATGTGGGCCAA----GATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG +s panTro1.chr18 150233 95 + 83875239 A---TGTCTCTGACCAAGACTGAGGGGACCATCATTGTGTCCATGTGGGCCAA----GATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG +s baboon.ENm008_1 126530 95 + 646721 A---TGTCTCTGACCAAGACTGAGAGGACCCTCATTGTGTCCATGTGGGCCAA----GATCTCCACCCAGGCCGACACCATTGGCACCGAGACTCTGG-AGAG +s rheMac1.SCAFFOLD56242 8130 95 + 11012 A---TGTCTCTGACCAAGACTGATAGGACCCTCATTGTGTCCATGTGGGCCAA----GATCTCCACTCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG +s marmoset.ENm008_1 263219 87 + 609522 G---TCTCCC--------GCCGACAAGAGCAACGTCAAGGCCGCCTGGGGTAA----GGTCGGCAGCCACGCTGGCGACTATGGTGCCGAGGCCCTGG-AGAG +s galago.ENm008_1 316366 95 + 764343 A---TGTCTCTGACCAAGACTGAGAGGGCCATCATTGTGTCCATGTGGGGCAA----GATCTCCACACAGGCCGACACCATTGGCACTGAGACCCTGG-AGAG +s rn3.chr10 95139962 95 - 110733352 A---TGTCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGACAA----AATGGCGCCTCATGCAGAGCCCATTGGCACTGAGACTCTGG-AGAG +s mm6.chr11 32171455 98 + 121803636 ACCATGTCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGAGAA----GATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAG-AGAG +s rabbit.ENm008_1 189022 95 + 203479 A---TGTCTCTGACCAAGAGCCAGAGGACCATCATCATGTCCCTCTGGGACAA----GGTCTCCTCCCAGTCTGAGGACATTGGCGCAGAGGCCCTGG-AGAG +s cow.ENm008_1 252523 95 + 491063 A---TGTCTCTGACCAGAGCTGAGAGGACCATCATCGTGTCCATGTGGAGCAA----GATCTCCACACAGGCGGACCTCATTGGCACCGAGACCCTGG-AGAG +s canFam1.chr6 37152261 96 - 79106041 A---TGTCTCTGACCAAGGCCGAGAGGACCATCATCCTGTCCATGTGGGGCAA----GATCTCCACCCAGGCGGATGCTATTGGCACCGAGGCCCTGGAAGAG +s rfbat.ENm008_1 159281 95 + 557006 A---TGTCTCTGACCAAGGCTGAGAGGACCATCATCACATCCATGTGGAACAA----GATCTCCACACAGGCGGACGCCATCGGCACCGAGGCCCTGG-AGAG +s shrew.ENm008_3 19118 75 - 44886 A---TGTCGCTGACCAAGGCCGAGAGGACCATCATCCTGTCCATGTGGGGCAA----GATCTCCACACAGGCGGATGTCATC--------------------- +s armadillo.ENm008_1 215339 95 + 489446 A---TGTCGCTGACCAAGGCCGAGAGGACCATCATCGTGTCCATGTGGGGCAA----GATCGCCTCGCAGGCCGACGCCATCGGCACCGAGGCCCTGG-AGCG +s elephant.ENm008_1 44698 95 + 364520 A---TGTCTCTGACCAAGGTGGAGAGGACCATCATCACGTCCATGTGGGGCAA----GGTCTCCACACAGGCTGACAGCATCGGCACCGAGGCCCTGG-AGAG +s monDom1.scaffold_13198 999078 95 + 1560775 A---TGTCTCTGACCAAGACCGACAAGGCTATCATCCTCACCATCTGGAACAA----GATCGCCACTCAGGCTGACTCTGTTGGTACTGAGGCCTTGG-AACG +s platypus.ENm008_14 23821 95 - 31480 A---TGTCTCTGACCAAGGCCGACAAGACCGCAGTCATCTCCCTCTGGGGAAA----GGCGGCCACCCAGGCTGACGCCATCGGGGCCGAGTCTCTGG-AGAG +s galGal2.chr14 13958597 95 + 20603938 A---TGGCACTGACCCAAGCTGAGAAGGCTGCCGTGACCACCATCTGGGCAAA----GGTGGCTACCCAGATTGAGTCCATTGGGCTGGAATCACTGG-AGAG +s tetNig1.chr3 11754597 95 + 14679700 A---TGTCTCTTAACGCTAATGACAAGAAAGTGATCACCACCTTCTGGGGCAA----AGCCTCGGCACAGGCTGACGCCATCGGATCGGATGCTCTGG-GAAG +s danRer2.chrUn 33997195 93 + 173451396 G---AGTCTCTC--TGATACGGACAAGGCTGTTGTTAAGGCCATCTGGGCTAAGATCAGCCCCA----AGGCCGATGAAATTGGTGCTGAAGCCCTCG-CCAG + +a score=835584.0 +s hg17.chr16 88647254 37 - 88827254 TCGGGCTTCCCGGGACCGAAGTGCGAAATACAAGTAA +s panTro1.chr18 83679420 37 - 83875239 TCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA +s baboon.ENm008_1 483258 37 - 646721 TCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA +s rheMac1.SCAFFOLD35869 32826 37 + 37522 TCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA +s marmoset.ENm008_1 335205 37 - 609522 TCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA +s galago.ENm008_1 398924 37 - 764343 CCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA +s rn3.chr10 15549542 37 + 110733352 ACGGGCTTCCAGGGACCGGAGTACAAAATACAAGTAA +s mm6.chr17 24073266 37 + 92867660 CCGGGCTTCCAGGGACCGGAGTACAAAATACAAGTAA +s rabbit.ENm008_1 6761 37 - 203479 CCGGGTTTCCCGGGACGGGAGTGCGAAATACAAGTAA +s cow.ENm008_1 204953 37 - 491063 ACGGGCATCCAGGGACCGGAGCTCGAAATACAAGTAA +s canFam1.chr6 41920007 37 + 79106041 CCGGGCTTCCAGGGACCGGAGTGCGAAATACAAGTAA +s rfbat.ENm008_1 369494 37 - 557006 CTGGGCTTCCAGGGACCAGAGTGCGAAATACAAGTAA +s shrew.ENm008_3 11072 37 + 44886 CCGGGCCTCCAGGGACCGGAGTTCGAAATACAAGTAA +s armadillo.ENm008_1 252273 37 - 489446 CCGGGCTTCCAGAGACCGGAGTTCGAAATACAAGTAA +s elephant.ENm008_1 300962 37 - 364520 CCGGGCCTCCAGGGATCGGAGCTCGAAATACAAGTAA +s tenrec.ENm008_6 29249 37 - 30140 CCGGGCCTCCAGAGACCGCAGCTCGAGACACAAGTAA +s monDom1.scaffold_13198 478522 37 - 1560775 CCGAGGTTCCAGAGACAGAAGTTCGAAACACAAGTAA +s platypus.ENm008_21 9488 37 - 16755 CCGGGGCTCCAGAGACCGCAGTTCCAAACACAAGTAA + +a score=1575168.0 +s hg17.chr16 88647119 135 - 88827254 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCG------ACGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCG +s panTro1.chr18 83679285 135 - 83875239 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCG------ACGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCG +s baboon.ENm008_1 483123 135 - 646721 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCG------ACGGAAGTTGTCCCGGTCCCGGTCGCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCG +s rheMac1.SCAFFOLD35869 32691 135 + 37522 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCG------ACGAAAGTTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCG +s marmoset.ENm008_1 335070 135 - 609522 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCG------ACGGAAGTTGTCCCGGTCCCGGTCCCGAGATAGACATAGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCG +s galago.ENm008_1 398783 141 - 764343 GTCACGCTCCCGGGACCGGCGTCGGAGGCGGTCAAGGTCTACATCCCGGGAGCGGGAGCGACGGAAGTCTTCCCGGTCCCGGTCCCGAGACAGACACCGGCGCCACCGTAGCCGTTCCCGGAGTCACAGCCGGGGACACCG +s rn3.chr10 15549407 135 + 110733352 GTCACGTTCCCGGGATCGTCGAAGGAGGCGGTCTAGGTCTACCTCCCGAGAGCG------GCGGAAGTTTTCCCGTTCCAGGTCCCGAGATAGATACCGGCGACATCGCAGCCGTTCCCGGAGCCACAGCCGGGGTCACCG +s mm6.chr17 24073131 135 + 92867660 GTCACGCTCCCGGGATCGTCGACGGAGGCGGTCTAGGTCTACCTCCAGAGAGCG------GCGGAAGTTTTCCCGTTCCAGATCCCGAGATAGATACAGGCGCCATCGCAGCCGTTCCCGGAGCCACAGCCGGGGTCACCG +s rabbit.ENm008_1 6626 135 - 203479 GTCACGTTCCCGGGAGCGGCGTCGAAGGCGGTCAAGGTCTGCCTCCCGAGAGCG------GAGGAAGTCTTCCCGGTCCCGGTCCCGAGACAGACACCGACGCCACCGCAGCCGTTCGCGGAGCCACAGCCGGGGTCACCG +s cow.ENm008_1 204818 135 - 491063 GTCGCGCTCCCGGGACCGACGTCGCAGGCGATCGAGGTCAACTTCCAGAGAGCG------GCGGAAGTCGTCCCGCTCCCGGTCCCGAGACAGACACCGGCGCCACCGAAGCCGCTCCCGGAGCCACAGCCGTGGCCATCG +s canFam1.chr6 41919872 135 + 79106041 GTCACGCTCCCGGGACCGGCGTCGGAGGAGGTCCAGATCTACCTCCAGGGAGCG------ACGAAAGTCATCCCGGTCCCGGTCCCGAGACAGACACCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGCCACCG +s rfbat.ENm008_1 369359 135 - 557006 GTCGCGTTCCCGGGACCGGCGTCGGCGGCGGTCAAGATCTACCTCCAGAGAAAG------ACGAAAATCATCCAGGTCCCGCTCCCAAGACAGACACCGGCGCCACCGCAGTCGTTCCCGGAGCCACAGCCGGGGCCACCG +s shrew.ENm008_3 10937 135 + 44886 GTCACGTTCCAGGGAGAGACGTCGGAGACGGTCCAGATCTGCCTCCAGAGAGCG------ACGGAAGTCTTCCCGGTCTCGGTCTCGAGACAGACACCGGCGCCACCGAAGCCGTTCCCGTAGCCACAGCAGGGGCCACCG +s armadillo.ENm008_1 252138 135 - 489446 GTCCCGTTCTCGAGACCGGCGCCGTAGGCGGTCCAGGTCCACCTCCCGGGAGCG------GCGGAAGTCTTCCCGGTCCCGGTCCCGAGACAGACACCGGCGCCACCGGAGCCGCTCCCGGAGCCACAGCCGGGGCCACCG +s elephant.ENm008_1 300827 135 - 364520 GTCGCGCTCTCGGGACCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGTGAGCG------ACGCAAGTCTTCCCGGTCCTGGTCCCGAGACAGACACCGGCGCCACCGGAGCCGTTCCCGGAGCCACAGTCGGGGCCACCG +s tenrec.ENm008_6 29114 135 - 30140 GTCTCGCTCTCGGGACCGGCGAAGGAGGCGGTCAAGGTCAGCCTCCAGAGAGCG------GCGGAAATCCTCGAGATCTAGGTCCCGAGACAGACACCGGCGACACCGCAGCCGGTCCAGAAGCCACAGCCGGGGCCACCG +s monDom1.scaffold_13198 478390 132 - 1560775 GTCACGATCTCGGGACAGACGACGAAGGCGGTCAAGGTCAGGCTCTCGTGAGAG------GCGAAAGT---CCCGTTCCCGATCTCGGGACAGACATAGGCGCCACCGCAGCCGCTCACGTAGCCATAGCAGGGGCCATCG +s platypus.ENm008_21 9356 132 - 16755 GTCACGATCTCGGGACAGGCGGCGGAGGCGGTCGAGGTCGGCCTCCCGCGAGCG------GCGGAAGT---CCCGCTCCCGCTCCCGCGAGCGCCACAGGCGCCATCGGACCCGCTCGCGCAGCCCCAGCCGGGGCCACCG +s galGal2.chr1 45874840 129 + 188239860 ATCTAGGTCCCGAGATCGTCGCAGACATCGCTCTCGCTCAGCCTCCAGGGAACG------GAAAAGAAGAACTCGCTCTAAATCCCGTGAGAAACGCCATCGCCACAGGTCTCGCTCCAACAGCCGCAGCCGGAG------ +s tetNig1.chr2 4561145 132 + 19247847 GTCTCGCTCTCGCGACCGCAGGAGGAGACGCTCGCGCTCCACATCACGAGACAG------GCGCCGCT---CGCGCTCGCGTTCCAGGGAGAGGAGGAGGAGGCATCGCAGCAGATCAGGCTCGCGCACCAGGGGACACCG + +a score=66271.0 +s hg17.chr16 244413 3 + 88827254 ATG +s panTro1.chr18 262355 3 + 83875239 ATG +s baboon.ENm008_1 236575 3 + 646721 ATG +s marmoset.ENm008_1 325096 3 + 609522 ATG +s galago.ENm008_1 444137 3 + 764343 ATG +s rn3.chr10 95244723 3 - 110733352 ATG +s mm6.chr17 68853941 3 - 92867660 ATG +s cow.ENm008_1 211703 3 + 491063 ATG +s canFam1.chr6 37249961 3 - 79106041 ACG +s rfbat.ENm008_1 229422 3 + 557006 ATG +s shrew.ENm008_10 12439 3 - 17082 ATG +s elephant.ENm008_1 148321 3 + 364520 ATG +s tenrec.ENm008_7 18660 3 + 30195 ATG +s monDom1.scaffold_13198 1237364 3 + 1560775 ATG +s galGal2.chr14 6505196 1 - 20603938 A-- +s tetNig1.chr2 14692253 0 - 19247847 --- +s fr1.chrUn 145488188 0 + 349519338 --- + +a score=446949.0 +s hg17.chr16 244416 121 + 88827254 TTGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAATCCAT------CAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAG------T--- +s panTro1.chr18 262358 121 + 83875239 TTGGACCACAAGGACTTAGAAGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAATCCAT------CAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAG------T--- +s baboon.ENm008_1 236578 121 + 646721 TTGGACCACCAGGACTTAGAAGCTGAAGTCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAACCCAT------CGAAAAATGAGGATAACTTGAAAAGCACACCTCCACAG------T--- +s marmoset.ENm008_1 325099 121 + 609522 TTGGACAACAAGGACTTAGAAGCCGAAATCTACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAACCCAT------CGAAAAATGAAGATAACTTGAAAAGCACGCCTCCACAA------G--- +s galago.ENm008_1 444140 121 + 764343 ATGGACAGCAGGGATCAAGAAGCTGAAATCCACCCCTTGAAAAATGAAGACAGAAAATCACAGGAAAACCTGGGAAACCAAC------TAAAAAATGAAGATAACTTGAAAAGTATGCCTCTGCAG------T--- +s rn3.chr10 95244726 121 - 110733352 ATGGATGACAAGGATCTAGAAGCTGAAATACATCCCTTGAAGAATGAGGACAAAAAGTCACAGGAAAACCTAGGAAACCTAC------CAAAGACCGAGGACAACTTGAAGAACAAGCCTGTGCCT------T--- +s mm6.chr17 68853944 121 - 92867660 ATGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAAACCCAGGAAACCTAC------CAAGAAACGAAGATAACTTGAAGAGCAAGCCTGTGCCT------T--- +s cow.ENm008_1 211706 118 + 491063 ACGGACGGCAAGGACTTGGAGGCCGAGATCCACCCGCTCAAAAGCGAGAACAGGAAGGTACCGGAGAACGCGGGGGCCCTGG------CAGGAAAGGAGCCCCG--CGGGACGCCGGCCCCG-CAG------A--- +s canFam1.chr6 37249964 121 - 79106041 ATGGACAGCAAGGACCTAGAAGCCGAAATCCACCCCCTGAGGAACGAAGACAAGAGGCTGCCCGAGACCCCGGGAAACCCGGGCCACGCAGACGAGAAGCT------GAAAAGCTCGCCCCGGCAG------C--- +s rfbat.ENm008_1 229425 121 + 557006 ATGGACAGCAAGGACCTAGAAGCGGAAATCCACCCCTTGAAGAACGAAGATGGGAAATTGCAGGAGAATCTGGAAAACCCAG------CGAAAAAGGAAGAGCACTCGAAAAGCACCCCCGTGCGG------T--- +s shrew.ENm008_10 12442 121 - 17082 ATGGAGCACAAGGACTTGGAAGCTGAGATCCGCCCCTTGAAAAATGAAGACAGGAAATTGCAGGGGACTCTGGGAACGCAGG------CGGGCAAGGAGGACCCCCTGAAGGGGACCCCACAGCTG------T--- +s elephant.ENm008_1 148324 121 + 364520 ATGGACAACAAGGATTTAGAAGCTGAAATCCACCCCTTGAAGAATGAGGACCGGACATCGCAGGAGAACCTGGGGAACCGCA------CTGAAAAGGAAGACCCCTGTAAGAGCCTGCCTCCACAG------T--- +s tenrec.ENm008_7 18663 127 + 30195 GTGGACAACAAAGACCTGGACGCGGAAATCCACCCCTTGAAGAGCGAAGACGGGAGACCGGCCGAGAGCGGGCGAAGCCCCT------CTGAGAAGGAGGAGCCCGGCCTGAGCAGCCCCGCACGGCGGCACT--- +s monDom1.scaffold_13198 1237367 115 + 1560775 ------GACAAAGAATTAGAAGCTGAAATCCACCCCTTGAAACATGATGACAAAGTACCTCAGAGCAATTTGAAAAACCAAA------CTGAAAAAGATGGTTCTTTTAAGAAAGCATCTCGGCAT------T--- +s galGal2.chr14 6505217 121 - 20603938 ATGGATAACAAAGACTCAGAAGCTGAGATCCACCCCCTGAAGACAGAGGACGTGAAAGCTCAAGAGAACCATGAGAACTCTG------TTGAGAGGAGAATCATCATCAAGCAGTCGTCGCAGCTG------T--- +s tetNig1.chr2 14692253 106 - 19247847 -TGGAGAATACAGCCAGCGCTGCAGAGGCTGACCCTCTAAAGAGAGCAGACGA-------TGGGGG----CGAGATGCCTTC------------ATCAACAGAGCTGAGGAAGAAGAGCTGCAAAG------AAGT +s fr1.chrUn 145488188 106 + 349519338 -TGGAGAATACAGTCATTGCTGCAGAGGTGGACCCTCTAAAGAGAGCAGAGGA-------TGGGGG----TGAGGTGCCTTC------------ATCAGCAGAGCTGAAGAAGAAGACCTGCAATG------GAGT + +a score=925944.0 +s hg17.chr16 244537 144 + 88827254 CCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCC--GGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTG +s panTro1.chr18 262479 144 + 83875239 CCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGCCTCATTCGTCATCCCGTGTCCAGACCGGCC--GGCGTCACAGCAAATGTGGAGGATAGACTACAGTGCCGCTG +s baboon.ENm008_1 236699 144 + 646721 CCCGGCTCTCCCGTTGCCGAACGGTGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTTGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCC--AGCGTCACAGCGAATGTGGAGGATCGACTACAATGCCGCTG +s marmoset.ENm008_1 325220 144 + 609522 CCCAGCTCTCCCGATGCCGTTCCGTGGCGTTTTTTATTTCGTTGTTTCTCTGCCTTTTTGTGGTGTTTGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCC--AGCGTCACAGCGAATGTGGAGGATGGACTACAATGCCGCTG +s galago.ENm008_1 444261 144 + 764343 CCCGGTTGTCCCGATGCCGAGCAGTGGCTTTTTTCCTTTCATTGTTTATCTGCCTTTTTGTGGTGTTTGTCATCTCATTCATCATCCCATGCCCTGACCGACC--TGCGTCACAGCGCATGTGGAGGGTCGATTATAGTGCAGCAG +s rn3.chr10 95244847 144 - 110733352 CTCGCTTGTCCCGGTGTCGCACGGTGGCATTTTTCCTTTCCCTGTTCATCTGTCTCTTTGTGGTGTTTGTCCTCTCTTTCATCATCCCATGCCCAGACCGACC--GTCCTCTGAGGACAAGTGGAGGCTGGACTACGACTATGCAG +s mm6.chr17 68854065 144 - 92867660 CCCGCTTGTCCCGGTGCCGCACAGTGGCATTTTTCCTTTCCCTGTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATCCCATGTCCAGACCGTCC--CTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAG +s cow.ENm008_1 211824 144 + 491063 CTCGCCTCTCGCACTGCCGGACCGCGGCCTTCTTCCTCTCCCTGTTTGCCTGCCTCCTCGTGGTGTTCGTGGTCTCCTTCATCATCCCGTGTCCGGACCGGCC--GGCGTTGCAGGGGGTGTGGAGGATCGATTACAATGCGGCAG +s canFam1.chr6 37250085 144 - 79106041 CCCGCCTCTCCCGGTGCCGCACCGTTGTGTTTTTTCTTTCACTGTTTGTCTGCCTGTTCGTAGTGTTCGTGGTTTCGTTCATCATCCCGTGCCCGGAACGGCC--CGTGTCGCAGGGGATGTGGCGGATAGACTACAGCGCGGCAG +s rfbat.ENm008_1 229546 141 + 557006 CCCGTCTCTCCGGATGCCGGACGGCCGTGTTTTTCCTCTCGCTGTTTATCTGCCTTTTGGTGGTGTTTGTGATTTCCTTCATCATCCCGTGTCCAGATCGACC--AGCGTCACA---GACGTGGAGAATCGATTACAACACGGCAG +s shrew.ENm008_10 12563 144 - 17082 CCCGCCTCTCCCGCTGCCGCACAGTGGTCTTCTTCCTCTCTCTCTTCATCTGCCTCTTCACAGTCTTCGTGGTCTCCTTCATCGTCCCCTGCCCAGAGAGGTC--TGCGTCCCAGGGGACGTGGAGGATCAACTTCAGCCAAGCAG +s elephant.ENm008_1 148445 144 + 364520 CCCAGCTATCCCGGTGCCGGACAGTGGCATTTTTTCTCTCCCTGTTTATCTGCCTTTTTGTGGTGTTTGTCGTCTCATTCATCATCCCGTGTCCAGACCGGCC--TGTATCACAGCAAATGTGGAGAATCAATTACGACACAGCAG +s tenrec.ENm008_7 18790 144 + 30195 CCCGGCTGTCGCGGTGCCGGGCGGTGGCCTTCTTCCTTTCCCTCTTCCTCTGCCTGCTCGTAGCCTTCATCGTGTCCTTCATCATCCCCTGTCCCGAGCGGCC--CGAGTCTCAGCGGGAGTGGAGGATTGATTACAACAGAGCAG +s monDom1.scaffold_13198 1237482 144 + 1560775 CCCGGTTTGCCCAGTGCCGCACAATGTTTTTTTTCTTTTCATTATTTACCTGCCTCTTTGTGGTATTTATCATCTCATTCATCATCCCATGTCCAGATCGACC--AGTATCACAAAAAACATGGAAAATAAATTATGACAAAGCAG +s galGal2.chr14 6505338 144 - 20603938 CTCGGCTGTCCCGCTGGCGCACCGCCGCCTTCTTCATCTCATTATTTCTGTGTCTCATCATCGTGTTTGCCTTCTCCTTTATCATTCCTTGCCCTGAGAGGCC--TGTCTCAGAGAGAACGTGGCTCCGAAACTATGACAATGCAG +s tetNig1.chr2 14692370 144 - 19247847 CCAAACTGACCCACTGGCGAACGGCGGTGTTCTTCCTCTCCCTGTTCCTTTGCCTCACCATCGTGTTTGCCTTCTCCTTCATCATTCCATGTCCCGTCAGACCACAGTATCTCATTT--CCTGGAACAGAACTTTCCTCGATGCAG +s fr1.chrUn 145488305 144 + 349519338 CCAAACTGACCCACTGGCGAACAGCGGTTTTCTTCCTCTCCATATTCCTTTGCCTCGCCATAGTGTTTGCCTTCTCCTTCATCATTCCATGTCCTGTCCGACCACAGTATCTCATTT--CCTGGAACAGAACTTTCCCCGAAGCAG + +a score=-53981.0 +s hg17.chr16 88567979 7 - 88827254 GGCCTAG +s baboon.ENm008_1 394295 7 - 646721 GGCCTAG +s rheMac1.SCAFFOLD20467 36591 7 + 46047 GGCCTAG +s marmoset.ENm008_1 271497 7 - 609522 GGCCTAG +s galago.ENm008_1 301757 7 - 764343 GGTCTAG +s rn3.chr10 15478449 7 + 110733352 GGACTAA +s mm6.chr17 24003897 7 + 92867660 GTAGTAG +s cow.ENm008_1 269608 7 - 491063 GACCTAG +s canFam1.chr6 41844530 5 + 79106041 GAC--AG +s rfbat.ENm008_1 317901 7 - 557006 GGCCTAG +s tenrec.ENm008_7 2982 7 - 30195 GGCCTAG +s monDom1.scaffold_13198 292597 7 - 1560775 GGAAGAA +s platypus.ENm008_4 12792 7 + 36466 GAAGTGG +s xenTro1.scaffold_142 1991987 7 - 2099714 AGAACAG +s tetNig1.chr15 2732532 5 + 7231322 --CATCT +s fr1.chrUn 317248718 5 - 349519338 --CAACG +s danRer2.chr1 55770458 5 - 62208023 --CAATT + +a score=-36308.0 +s hg17.chr16 88567970 9 - 88827254 AG------ATGG----------G---------------------GT +s baboon.ENm008_1 394286 9 - 646721 AG------ATGG----------G---------------------GT +s rheMac1.SCAFFOLD20467 36582 9 + 46047 AG------ATGG----------G---------------------GT +s marmoset.ENm008_1 271488 9 - 609522 AG------ATGG----------G---------------------GT +s galago.ENm008_1 301750 7 - 764343 --------ATGG----------G---------------------GA +s rn3.chr10 15478440 9 + 110733352 CA------ATGA----------G---------------------GA +s mm6.chr17 24003888 9 + 92867660 CG------ATGG----------G---------------------GA +s cow.ENm008_1 269602 6 - 491063 ---------TGG----------G---------------------GA +s canFam1.chr6 41844524 6 + 79106041 ---------TGC----------G---------------------GG +s rfbat.ENm008_1 317892 9 - 557006 TC------CTGG----------G---------------------GA +s tenrec.ENm008_7 2973 9 - 30195 GG------ATGG----------G---------------------GA +s monDom1.scaffold_13198 292578 19 - 1560775 AA------CTGAAGAATGGCCAG---------------------GA +s platypus.ENm008_4 12756 36 + 36466 AGTCTGGCATAG----------GCCAGCCCCTCTCCCGGGCACAGT +s xenTro1.scaffold_142 1991979 8 - 2099714 -------AAGAG----------G---------------------GA +s fr1.chrUn 317248678 7 - 349519338 --------AGCA----------G---------------------GA + +a score=-69441.0 +s hg17.chr16 88567942 28 - 88827254 CCACA---GC--GGCTTGTGG------C-----CCTGGGGGTGG +s baboon.ENm008_1 394258 28 - 646721 CCACA---GC--GGCTGGTGG------C-----CCTGGGGGAGG +s rheMac1.SCAFFOLD20467 36554 28 + 46047 CCACA---GC--GGCTGGTGG------C-----CCTGGGGGAGG +s marmoset.ENm008_1 271460 28 - 609522 CCACA---GC--GGCCAGTGG------C-----CCTGCGGGAGG +s galago.ENm008_1 301723 27 - 764343 CCATG---GT--GGTTGGCAG------C-----CCTCGGGGTG- +s rn3.chr10 15478412 28 + 110733352 CTGCA---GC--TACCAGCTC------C-----CCTGCAGGTGG +s mm6.chr17 24003860 28 + 92867660 CTGCA---GC--AACCAGTTC------C-----CCTGAAGGTGC +s cow.ENm008_1 269583 19 - 491063 CCGTGGGTGG--AGATGGTGA----------------------- +s canFam1.chr6 41844498 26 + 79106041 CTGTGACTGC--TGCAAGTGA------C-----CCTGCG----- +s rfbat.ENm008_1 317861 31 - 557006 GTGCGGCTGC--TCCTGGGGG------T-----CCTGGGGGTGG +s tenrec.ENm008_7 2948 25 - 30195 CCAGA---GG--AGC---TGC------C-----CCTGAGGGTGG +s monDom1.scaffold_13198 292545 33 - 1560775 CCGCT---GT--GAGGAGAGC------CAAGGACCTGGGGGCAA +s platypus.ENm008_4 12728 28 + 36466 CAGGC---AC--TGCTGAGGG------T-----CCTGACGCTAC +s galGal2.chr14 14084168 13 + 20603938 CCGAG---GC-----CAAGGG----------------------- +s tetNig1.chr15 2732498 34 + 7231322 --ATG---GAGCGGCCAGGAGAGCCGGC-----CAGGGAAGCAG +s fr1.chrUn 317248684 34 - 349519338 --ACG---GACAGGCCAAGAGAGCCGGG-----CAGGGAAGCGG +s danRer2.chr1 55770424 34 - 62208023 --ATG---GGAAGGCAAAAAACTCAAAC-----TCTGTCAAAAG + +a score=19813.0 +s hg17.chr16 88567928 14 - 88827254 CACCCCTGTGGA----GC +s baboon.ENm008_1 394244 14 - 646721 CGCCCCTGTGGA----GC +s rheMac1.SCAFFOLD20467 36540 14 + 46047 CACCCCTGTGGA----GC +s marmoset.ENm008_1 271446 14 - 609522 CACCCCTGTGGA----GC +s galago.ENm008_1 301709 14 - 764343 CACCTCTGGGGA----GC +s rn3.chr10 15478398 14 + 110733352 GACCTCTGGGGA----GC +s mm6.chr17 24003846 14 + 92867660 TACCCCCAGGGA----GC +s cow.ENm008_1 269569 14 - 491063 GGCCTCTGGGGA----GC +s canFam1.chr6 41844484 14 + 79106041 CACATCTGCAGA----GC +s rfbat.ENm008_1 317847 14 - 557006 AACCTCTGGGGA----TT +s tenrec.ENm008_7 2934 14 - 30195 TGCTTCTGGGGA----GC +s monDom1.scaffold_13198 292528 17 - 1560775 -CCTTCTGTGGAATGGGT +s platypus.ENm008_4 12714 14 + 36466 TGCGGCTCCGGG----GC +s galGal2.chr14 14084154 14 + 20603938 GCCCGCCGGTGA----CA +s xenTro1.scaffold_142 1991965 14 - 2099714 GCCCCAGGGGGA----GC +s tetNig1.chr15 2732478 14 + 7231322 CGCCCCGATGGA----GG +s fr1.chrUn 317248664 14 - 349519338 GGCCCGGATGGC----GG +s danRer2.chr1 55770405 13 - 62208023 -ACCCATACCAC----AG + +a score=324439.0 +s hg17.chr16 88567871 57 - 88827254 CGTGTTCCC---GTTTACGTGGAGGCCAC-GGCACTCG--------------AGCCCCAGCCCTGCAC--TCCTTCC +s panTro1.chr18 83596110 57 - 83875239 CGTGTTCCC---AATTACGTGGAGGCCAC-GGCACTCG--------------AGCCCCAGCCCTGCAC--TCCTCCC +s baboon.ENm008_1 394187 57 - 646721 CGTGTTCCC---GTTCTCGCGGAGGCCAC-GGCACTCA--------------GGCCCCAGCCCTGCAC--TCCTTCC +s rheMac1.SCAFFOLD20467 36483 57 + 46047 CGTGTTCCC---GTTCTCGCGGAGGCCAC-GGCACTCA--------------AGCCCCAGCCCTGCAC--TCCTTCC +s marmoset.ENm008_1 271392 54 - 609522 CATGTTCCT---GTTCACACGGAGGCCGC-G---CTTG--------------AGCCCCAGCCCTGCAC--TCCTTCC +s galago.ENm008_1 301652 57 - 764343 GGTGTTCCC---ATTCACATGGCAGCCAC-GGCACTCA--------------AGCCCCAGCCCTGCTC--TTCTTCC +s rn3.chr10 15478341 57 + 110733352 GCCATTCCC---ATTCTTGCGGAAGCCTC-TGCACTCA--------------AGTCCCAGCCCTGCTC--TCCAGTC +s mm6.chr17 24003789 57 + 92867660 GCCATTTCC---ATTCTTGCGGAAGCCTC-TGCACTCA--------------AGCCCCAGCCCTGCTC--TCCAGTC +s cow.ENm008_1 269506 57 - 491063 GGTGTTCCC---GTTCACGCGGAAGCCCC-GGCACTCC--------------AGCCCCAGCCCTGCTC--TCCTTCC +s canFam1.chr6 41844421 57 + 79106041 GGCCTTTCC---GTTCCTGCGGAAGCCGC-CACACCCG--------------AGCCCCAGCCCCACGC--TCCTTCC +s rfbat.ENm008_1 317784 57 - 557006 GGTGTTCCC---GTTCATGTGGAAGCCAC-GGCGTTCG--------------AGCCCCAGCCCTGCTC--TCCTTCC +s tenrec.ENm008_7 2883 51 - 30195 TGTGTTCCC---ATTCATGAGGAAGCCTC-GCT--------------------GCTCCAGCCCCACCC--TCCTGCC +s monDom1.scaffold_13198 292460 68 - 1560775 TCACCACTC---CATTATGTGAGAGAGTT-GGAATTGGGAATTACCATGATCAGCCTCA---CTGTAT--CCCCTTC +s platypus.ENm008_4 12643 61 + 36466 TGGCTGGCCTGGGCTGGCAGGGGGTTCACAGGCATTTG--------------GAGTCACCCGCTGCTC--TCCTCGC +s galGal2.chr14 14084097 57 + 20603938 GGTGTTCCC---CTTCATGCGCAAGCAGC-GACACTCC--------------AGCCCCAGCCCGGCCC--TGCTCCT +s xenTro1.scaffold_142 1991908 57 - 2099714 AGTTTTCCC---ATTCATGAGAAGGCAGC-GACACTCC--------------AGCCCCAGTCCAGCGT--TCTTACT +s tetNig1.chr15 2732421 57 + 7231322 CGTCTTCCC---CTTCATGAGACGCCAGC-GGCACTCC--------------AGCCCCTCCCCGGCCCAGGCGTC-- +s fr1.chrUn 317248607 57 - 349519338 CGTCTTCCC---CTTCATGAGACGCCAGC-GGCACGCC--------------AGCCCCTCCCCCGCGCAGGCATC-- +s danRer2.chr1 55770350 55 - 62208023 TGTGTTCCC---GTTCATGCGTCGGCAGC-GCCACTCC--------------AGCCCCTCGCCTGCTC--TCGTC-- + +a score=7501055.0 +s hg17.chr18 52330965 74 - 76117153 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s panTro1.chr17 53626596 74 - 73346066 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s baboon.ENr213_1 488501 74 - 647425 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s rheMac1.SCAFFOLD126155 38397 74 + 41707 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s marmoset.ENr213_1 535348 74 - 758875 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s galago.ENr213_1 487089 74 - 702536 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTCGCTGAAATGTATGGTGGAGGTGATGACTGA +s rn3.chr18 79288257 74 - 87338544 ACTATGACTACCTGAATGACTGGGGACCCCGCTTCAAGAAGCTGGCCGACATGTATGGTGGTGGTGATGACTGA +s mm6.chr18 73523476 74 - 90308396 ACTATGACTACCTGAATGACTGGGGACCCCGCTTCAAGAAACTGGCGGACATGTACGGCGGTGGTGACGACTGA +s rabbit.ENr213_1 419472 74 - 525974 ACTATGATTACCTGAACGACTGGGGACCACGCTTCAAGAAACTCGCTGACATGTACGGTGGAGGTGATGACTGA +s cow.ENr213_1 128271 74 - 283180 ACTATGACTATCTGAACGACTGGGGGCCCCGCTTCAAGAAACTCGCTGACATGTACGGTGGAGGTGATGACTGA +s canFam1.chr7 63605739 74 + 83037113 ACTATGACTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s shrew.ENr213_2 53493 74 + 70744 ACTATGACTACCTGAACGACTGGGGGCCGCGCTTCAAGAAACTCGCTGACATGTATGGTGGAGGTGATGACTGA +s armadillo.ENr213_1 348613 74 - 467874 ACTATGACTACCTGAACGACTGGGGGCCGCGGTTCAAGAAGCTCGCTGACATGTACGGTGGAGGGGACGACTGA +s elephant.ENr213_1 366442 74 - 402523 ACTATGATTACCTGAACGACTGGGGGCCCCGGTTCAAGAAACTGGCTGACATGTACGGCGGAGGTGATGACTGA +s monDom1.scaffold_13637 1060635 74 - 3280295 ACTATGATTACCTAAATGACTGGGGCCCACGCTTCAAGAAACTTGCCGATATGTACGGCGGAGGTGATGACTGA +s platypus.ENr213_1 287463 74 - 296930 ACTATGATTACCTAAATGACTGGGGACCGCGTTTCAAGAAACTCGCCGACATGTACGGCGGGGGCGACGACTGA +s galGal2.chr2 43614053 74 - 147590765 ACTATGACTACCTAAATGACTGGGGCCCACGTTTCAAGAAACTTGCTGACATGTACGGTGGAGGTGATGACTGA +s tetNig1.chr15 437763 74 - 7231322 ACTACGATTACCTCAACGACTGGGGCCCTCGCTTTAGAAAACTGGCGGACATGTACGGCGGGTGCGACGACTAG +s danRer2.chrNA 279348809 74 + 318297480 ACTATGACTACCTCAACGATTGGGGCCCTCGCTTCCGCAAACTCGCCGACATGTACGGAGGTAACGACGACTAG + +a score=1838655.0 +s hg17.chr18 52330832 133 - 76117153 GGCCTTAAAGCGGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCC-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGTGAGCAGG +s panTro1.chr17 53626463 133 - 73346066 GGCCTTAAAGCGGCTGACAATGACCCGACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCC-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGTGAGCAGG +s baboon.ENr213_1 488368 133 - 647425 GGCCTTAAAGCGGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCC-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGTGAGCAGG +s rheMac1.SCAFFOLD126155 38264 133 + 41707 GGCCTTAAAGCGGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCC-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGTGAGCAGG +s marmoset.ENr213_1 535215 133 - 758875 GGCCTTAAAGCTGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCC-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGTGAGCAGG +s galago.ENr213_1 486956 133 - 702536 GGCCTTAAAGCTGCTGACAATGATCCCACAGCTCCACCATATGACTCCCTCTTAGTCTTTGACTACGAAGGCAGTGGCTCTACGGCGGGGTCC-TTGAGCTCCCT--AAATTCCTCAAGTAGTGG-CGGTGAGCAGG +s rn3.chr18 79288124 133 - 87338544 GGCCTTAAAGCTGCTGACAATGACCCCACGGCGCCACCATATGACTCCCTTTTAGTCTTCGACTATGAGGGCAGCGGCTCCACGGCTGGCTCC-TTGAGCTCTCT--CAACTCCTCCAGCAGCGG-CGGGGACCAGG +s mm6.chr18 73523343 133 - 90308396 GGCCTTAAAGCTGCTGACAACGACCCCACGGCGCCACCGTATGACTCCCTCTTAGTCTTTGACTACGAGGGCAGCGGCTCCACGGCTGGCTCC-TTGAGCTCCCT--CAACTCCTCCAGTAGCGG-TGGGGACCAGG +s rabbit.ENr213_1 419339 133 - 525974 GGCCTTAAAGCTGCTGACAATGATCCCACAGCCCCACCCTACGACTCTCTCTTAGTTTTTGACTATGAAGGCAGTGGCTCCACCGCTGGGTCT-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGTGAGCAGG +s cow.ENr213_1 128138 133 - 283180 GGCCTTAAAGCTGCTGACAACGATCCCACCGCTCCGCCCTACGACTCCCTCTTAGTCTTTGACTATGAAGGCAGTGGCTCCACGGCCGGGTCC-TTGAGCTCCCT--TAATTCCTCCAGTAGTGG-AGGTGAGCAGG +s canFam1.chr7 63605606 133 + 83037113 GGCCTTAAAGCTGCTGACAATGATCCCACAGCTCCACCATATGACTCCCTCTTAGTCTTTGACTACGAAGGCAGTGGCTCTACCGCTGGGTCT-TTGAGCTCCCT--TAATTCTTCAAGTAGTGG-TGGCGAGCAGG +s shrew.ENr213_2 53360 133 + 70744 GGCCTTAAAGCTGCTGACAATGACCCTACAGCCCCGCCATATGACTCCCTCTTAGTCTTTGACTATGAAGGCAGTGGCTCCACTGCCGGGTCC-TTGAGCTCCCT--GAATTCCTCGAGTAGCGG-TGGCGAACAGG +s armadillo.ENr213_1 348480 133 - 467874 GGCCTTAAAGCTGCCGACAATGATCCCACTGCTCCGCCATATGACTCGCTCTTAGTCTTTGACTATGAAGGCAGTGGCTCCACGGCTGGGTCC-TTGAGCTCCCT--TAATTCCTCAAGTAGTGG-TGGCGAGCAGG +s elephant.ENr213_1 366309 133 - 402523 GGCCTTAAAGCTGCTGACAATGACCCCACAGCTCCGCCCTATGACTCCCTCTTAGTCTTTGATTACGAAGGCAGTGGTTCCACCGCCGGGTCC-TTGAGCTCCCT--AAATTCCTCAAGTAGTGG-TGGCGAGCAGG +s tenrec.ENr213_11 7864 137 - 14033 GGCCTGAAAGCTGCTGACAACGATCCCACTGCTCCACCATATGACTCCCTCTTAGTCTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCCTTTGAGCTCCCTTCAACTCCTTCAAGTAGTGGTTGGTGAACAGG +s monDom1.scaffold_13637 1060502 133 - 3280295 GGACTCAAAGCTGCTGACAATGACCCCACAGCTCCACCGTATGACTCCCTTCTAGTGTTTGATTATGAAGGCAGTGGTTCCACCGCTGGTTCT-TTGAGCTCCCT--GAACTCCTCCAGTAGTGG-TGGTGAACAGG +s platypus.ENr213_1 287330 133 - 296930 GGACTGAAAGCTGCGGACAACGATCCCACAGCACCGCCCTACGACTCTCTCCTAGTCTTCGACTACGAAGGCAGCGGCTCCACCGCGGGGTCT-TTGAGTTCCCT--GAATTCCTCAAGTAGCGG-CGGTGAGCAAG +s galGal2.chr2 43613920 133 - 147590765 GGACTTAAAGCAGCCGACAACGACCCTACAGCCCCGCCATACGATTCCCTCTTAGTCTTTGACTATGAAGGAAGCGGCTCCACTGCTGGATCC-TTGAGCTCTCT--TAATTCCTCAAGTAGCGG-TGGTGAGCAAG +s tetNig1.chr15 437630 133 - 7231322 GGACTGAAGGCAGCGGACAACGACCCCACCGCGCCCCCGTACGACTCGCTCTTGGTGTTCGACTACGAGGGCAGCGGCTCCACAGCCGGCTCC-CTCAGCTCCCT--CAACTCCTCCAGCAGCGG-GGGCGACCAGG +s danRer2.chrNA 279348676 133 + 318297480 GGCCTCAAGGCAGCCGACACCGATCCCACGGCCCCTCCGTATGACTCCCTGCTGGTGTTTGACTACGAGGGCAGCGGCTCCACGGCCGGCTCA-CTAAGCTCCCT--TCACTCGTCCAGCAGCGG-AGGAGACCAGG + +a score=572221.0 +s hg17.chr18 16661081 140 - 76117153 CTGCCACCGC---TGT-----AGTAGTAGTCGAATTATCATCTCCTTCAACTAATGAA---------GAGTTCTGTTGTAATCACCCTTTCCTATTCTTCATAAGGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCCAT--AG +s panTro1.chr17 17047191 140 - 73346066 CTGCCACCGC---TGT-----AGTAGTAGTCGAATTATCATCTCCTTCAACTAATGAA---------GAGTTCCATTGTAATCACCCTTTCCTATTCTTCATAAGGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCTGT--AG +s baboon.ENr122_1 511458 140 - 593854 CTGCCACCGC---TGT-----AGTAACAGGGTTTACATCACCTCTTTTAACTAATGAA---------GAGTTCCATTGTAATCACCCTTTCCTATTCTTCATCAGGCAAAATAAGACCAACAGCATCCTCTTCTTTGGCAGATTCTCATCCCCTT--AG +s rheMac1.SCAFFOLD81184 16099 140 + 35702 CTACCACCGC---TCT-----AGTAACAGAGCTTTCATCACCTCTTTTAACTAATGAA---------GAGTTCCATTGTAATCACCCTTTCCTATTCTTCATCAGGCAAAATAAGACCAACAGCATCCTCTTCTTTGGCAGATTCTCATCCCCTT--AG +s marmoset.ENr122_1 609017 140 - 677515 CTGCCACCGG---GGT-----GACAACAGGAATCACATCACCTCCTCCAACTAATGAA---------GAGTTCCATTGTAATCACCCTTTCCTATTCTTCATCAGGCAAAATAAGACCAACAGCATCCTCTTCTTTGGCAGATTCTCATCCCCTT--AG +s galago.ENr122_1 170022 137 + 408645 CTGGCACAGG---GAG-----TGAGGTGGG------------TTTTCGAATTAAATACCCCTCCATTGAATTCAACGTAGATCACCCATTCCTCTTCTTCATCAGGCACAACAAAACCAATAGCATCCTCTTTTATGGAAGATTCTGCTCCCCGT--AA +s rn3.chr13 98009375 137 - 111348958 CTGCCACAGG---GGT-----GGAAACCCGCATACTATC---TGCACCAAGGACCACA---------GAATTTACTTGTAATCGCCCTTTCATAGTCTTCATAAAGCCAAACAACACCAACAGCATCCTCTTCTTTGGAAGAGTATCTTCCCCTT--AA +s mm6.chr1 88146111 128 - 195109612 CTACCACGGG---GAT-----AAAATCCCATAATTTATC---TTTACAGATTACAGAA---------GATTTCTATTGTGATCATCCAT---TGGTC------AAGCACAGTAAGACCAACAGCATCCTCTTCTTTGGCACAATCTCTTCCCCTT--AA +s rabbit.ENr122_1 129367 133 + 384214 CGGCCACAGG---AAA-----CAACATTGTAGAAAAGCAACTTCCTGAATCTAC---A---------GTGTTCAGAGCTGATCACCCATTCCTATTTGTCATCAGGAAAGATGA------CATCATCTTGTTTAGTGGCAAAGTCTCTTGCCCTTGAAA +s cow.ENr122_1 688596 140 - 707333 CTGCTACCGG---TGT-----GGGTGTTGCTGTCATCACATCATTGCCGATTCGTGAG---------AGTTTCCGCTGCGATCACCCTTTCCTGTTCCTCATCAAGCACATCAAGACCAACAGCATCCTCTTCGGTGGCCGAGTCTCTTCCCCTT--AG +s canFam1.chr1 16357850 134 + 124897793 CCTCCACAGA---CGT-----AGAAGTTATTGCCAAATC---AGCACCAATCTAT------------CCTTTTCATTGCGATCACCCTTTCCTGTTCTTCATCAAGCACAATAAGACCAACAGCATCCTCTTCTTGGGCAGAGTCTCTTCCCCTT--AG +s rfbat.ENr122_1 373480 137 - 374400 CTGCTACTGG---CAT-----AGTAATTGGTCGAACATC---AGTACAGATGTATGAA---------CACTTCCATTGCGATCACCCTTTCCTTTTCTTCATCAAGCACAATGAGACCAACAGCATCCTCTTTTTTGGCAGAATCTCTACCCCTG--AC +s shrew.ENr122_3 27244 137 + 45941 CTGGCACCGG---AGT-----GGGCTTTGCCGTCA---CGCCAGCGCCAGGCTGCGAG---------GATTTCCTCTGCAATCACCCCTTCCTGTTCTTCATCAGGCACAGCGACTCCGACAGCGTCCTCTTCTTCGGCCGGTTTTCTTCTCCTT--AG +s armadillo.ENr122_1 308349 137 - 310133 CTGCCACCGG---TGT-----AGAAGCGGTTGCATTGTC---ATCACCAGTTTATGAA---------GAGTTGCGTGTTGATCACTCTTTCCTGTTCTTCATTAGGAAGAGATTAACCGACAGCATCCTCTTCCTTGGCAGAGTCTGTTCTCCTT--AG +s elephant.ENr122_1 308540 137 + 383286 CAGCCACCGC---GGTGGTC-AGGAACAGCCGGAGCCTC---AGCATAGAGCCA-------------AGGTTTTGTGCAGACCACCCTTTCCTCATGTTCATCAGACACCACAAGACCAACAGCATTCTATTCTGCGGCAGGTTCTCATCTCCGT--GA +s tenrec.ENr122_17 4442 137 + 6830 CGGCCACGGC---CGTGGTT-AGGAACTCGCGCAGCGCC---CGCACCGACCCG-------------CGCTTCTGTGCCGACCACCCATTCTTGCTGGTCATCTGCCACCGCGCCACCCACAGCCTGGTGTTCTGTGGCCGGGTCTGCTCGCCTT--GA +s monDom1.scaffold_15171 1812559 137 - 2219062 CTGGCACAGG---GGG-----TGTCATGACAGGGCGAAC---TGGTCATATTGGACTG---------CAAGTTGTGGCAGATCATCCTTTCCTTTTCTTTATCATACATAAGAAAACCAATACTATCCTTTTCTTTGGCAGATTCTGCTCCCCCT--AA +s platypus.ENr122_1 31388 137 - 72535 CTGGCATTGGGAGTGT-----CTTGACAGTACAAATGACATATCCTTTGATT---------------ACTTTTAATGCAGATCACCTGTTCCTCTTTTTCATCAGACATAACCACACTAATAACATTCTCTTCCTTGGCAGGTTCTGTTCCCCTT--AG +s galGal2.chr2 80207329 131 - 147590765 CTACTGCTGG---CAT-----TGCAATGCTTTGCATGGT---------TATAGAAGAG---------GATTTCAATGCTGACCATCCTTTCCTTTTCTTTCTTCGCCACAACCCAACGAAAAGCATAGTTTTCTTTGGCAGATATGCTTCTCCAT--GA +s tetNig1.chrUn_random 126447808 134 - 171761319 CAGCCAC------AGT-----GGCCATGGTTACATTCTG---TATGTTGAGGGAGGAA---------CACTTCACGGCAGACCATCCCTTCCTCTTCTTCATTAGACACAATAAGACCAAGTCCATCCTCTTCCTGGGGAGATACTCGTCTCCTC--AG +s danRer2.chr19 174375 125 + 52023587 CGGCCACTGC---TGCCATCGCGAAGTTTCTGTGCTATA---TTCCCCCAGTG--------------TCTTTTAATGCAGATCATCCGTTCCTTTTCTTCATCCGACACAATCCCACCAAGAGCATTCTGTTTTATGGACGCTTC-------------- + +a score=1602009.0 +s hg17.chr18 16660816 265 - 76117153 CTTGAAGAGAAACTCACTGCTGAGAAATTGATGGAATGGACAAGTTTGCAGAATATGAGAGAGAC---ATGTG---TCGATTTACACTTACCTCGGTTCAAAATGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAATGGTGAATATCTTCAAT---GGGGATGCAGACCTCTCAGGCATGACCTGGAGCCACGGTCTCTCAGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGTGGAAGCTGCAG +s panTro1.chr17 17046926 265 - 73346066 CTTGAAGAGAAACTCACTGCTGAGAAATTGATGGAATGGACAAGTTTGCAGAATATGAGACAGAC---ACATG---TCGATTTACACTTACCTCGGTTCAAAATGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAATGGTGAATATCTTCAAT---GGGGATGCAGACCTCTCAGGCATGACTGGGAGCCGCGGTCTCTCGGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGCGGAAGCTGCAG +s baboon.ENr122_1 511193 265 - 593854 CTTGAAGAGAAACTCACTGCTGAGAAATTGTTGGAATGGACAAGTTTGCAGAATATGAGAGAGGC---ACATG---TGGATTTACACTTGCCTCGGTTCAAAGTGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAAACATGGGAATGGTGGATCTCTTCAAT---GGGGATGCAGACCTCTCAGGCATGACTGGGAGCCACGGTCTCACGGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGCGGAGGCTGCAG +s rheMac1.SCAFFOLD81184 15834 265 + 35702 CTTGAAGAGAAACTCACTGCTGAGAAATTGTTGGAATGGACAAGTTTGCAGAATATGAGAGAGGC---ACATG---TGGATTTACACTTGCCTCGGTTCAAAGTGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAAACATGGGAATGGTGGATCTCTTCAAT---GGGGATGCAGACCTCTCAGGCATGACCGGGAGCCGCGGTCTCACGGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGCGGAGGCTGCAG +s marmoset.ENr122_1 608755 262 - 677515 CTTGAAGAGAAACTCACTGCTGAAAAATTGATGAAATGGACAAGTTTGCAGAATATGAGAAAGGT---GGATG---TGAATTTACGCTTACCTCGGTTCAAAGTGGAAGAGGCCTATGATCTCAAGGACACATTGAGAACCATGGGAATGGTGGATGTCTTCAGT---G---ATGCAGACCTCTCAGGCATGGCTGGGAGCCGGAATCTCGTGATATCTAAAGTTCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGCGGAGGCTACAG +s galago.ENr122_1 169754 268 + 408645 CTAGAAAAGGCCATCACCTATGAGAAGCTGAATGAGTGGACCAGT--GCAGA-CATGATGGAGTT---GTATGACGTGCAGCTGTCTCTGCCCAAGTTCAAGCTGGAAGAGAGTTATGACCTCAAGTCCACCCTGAGCAGTATGGGGATGAGCGATGCCTTCAACCCGAGCAAAGCTGATTTCTCAGGAATGTCTTTAGAGAGAAACCTATATCTGTCCAATATTTTCCACAAGGTTTTTGTGGAAATAAATGAAGAAGGTACTGAGGCTGCAG +s rn3.chr13 98009107 268 - 111348958 CTTGAAGAAAAACTAAGTGCTGACACGTTGCTAGCGTGGACAAGCCCAAAGAACATGCGGATGAC---GCAGT---TGAATTTATCTTTGCCTCGGTTCAAAGTGCAAGAGAAGTATGACCTCCCAGGTCCATTGGAGCACATGGGGATGGTCGATGCTTTCAATCCACAGAAGGCTGATTTCTCTGGCATGAGCAGCACTAAAGGTCTAGTGGTGTCTAAAGTTTTACACAAATCCTTTTTGGAGGTAAATGAAGAGGGAGCTGAAGCTGCTG +s mm6.chr1 88145843 268 - 195109612 CTTGAAGAACAACTCTCTACTGAAAAGTTACTAGAATGGACAAGAGCAGAAAATATGCATATGAC---CGAGT---TGTATTTATCTTTGCCTCGGTTCAAAGTGGAAGAGAAGTATGACCTCTCAGTTCCATTGAAACACATGGGGATGGTTGGCGCCTTTGATCCACAGAAGGCTGACTTCTCTGGCATGAACAGCACTCAAGGTCTTGTGGTGTCTAAAGTTTTACACAAGTCCTTTGTGGAGGTAAATGAAGAGGGAACAGAAGCTGCTG +s rabbit.ENr122_1 129099 268 + 384214 GTTGAAAACAAACTGACCTTTCGGAATCTAATGGACTGGACCAGTCCAAGAAGAATGAAATCTCA---GTATG---TTGAGGTGTTTCTTCCTCGGTTCAAGATAGAGAAGAATTATGAAATCAAAGAACACCTGCGAGCCCTGGGGCTGAGTGATATCTTTGATGAATCAAGAGCTGATCTCTCTGGCATCGCCTCGGGAGGTCGCCTCTACATATCGAAACTGATGCACAAATCATTCATAGAGGTTTCTGAGGAGGGAACCGAGGCAACAG +s cow.ENr122_1 688328 268 - 707333 CTTGAAGACCAGCTCACTGCTGAGAAGTTAATAGCGTGGACGAGCCCACAGAATATGGGGAAGAG---AGAAG---TGGACTTATACCTGCCTCGGTTTAAAGTGGAAGAGAGCTACGACCTCGTGCCCACACTGAAAGCCCTGGGGATGGTGGATGCCTTCAATGACAAGGTTGCCAACTTCTCGGGCATGACCGGGAGACGTGATCTGGTGGTATCAAAGGTCTTCCACAAGTCCTTTGTGGAGGTGACCGAGGAGGGCACGGAGGCCGCAG +s canFam1.chr1 16357582 268 + 124897793 CTTGAAGATCAACTCACTGCTGAGAACCTAATAGAGTGGACGAGCTCACAGAATATGAGCAATGG---GCAGG---TGGATTTATACTTACCCCGGTTCAAAGTAGAAGAGAGTTATGAGCTCAAGGCCACGCTGAAAGCCCTGGGAATGGTGGATGCCTTCAACACAAAGAGGGCCAACTTCTCAGGCATGACAGGGAGGCAGGATCTTGTGGTGTCTAAAGTCAGGCACAAGTCCTTTGTGGAGGTCACCGAAGAGGGCACGGAGGCTGCAG +s rfbat.ENr122_1 373212 268 - 374400 CTTGAAGATCAACTCACCGCTGAGAAATTAATAGAGTGGACAAGCTCACAGAATATGAGCAAGAG---AAAGG---TGGAGTTGCGCTTGCCTCGGTTCAAAGTGGAAGAGAGCTATGCCCTCGGGGACACAATGAGAGCGCTGGGGATGGGGAATGCCTTCACTCCAGGGGACGCCGACTTCTCAGGCATGACAGGGAGCCGGGGTTTCGTGCTGTCTCAAATAGTACACAAGTCCTTTGTGGAGGTGACCGAGGAGGGCACAGAGGCCGCAG +s shrew.ENr122_6 9914 268 - 63987 TTGGAAAGTGAAATAACTTTCGACAAATTCAACAAGTGGACGAGCAAAAGCACAATGACTGAAGA---TGACG---TTGAGGTGTTCATCCCTAAGTTCCGACTGGAAGAGAGTTATGAACTCAAACCCATACTGAGAAGCCTGGGGATGAAGGACGCCTTCGCCAAAGGCCAGGCCAATTTCTCAGGGATGTCAGAAGGGAATGAGCTATTTCTGTCCGAAGTGTTCCACAAAGCCATCGTGGATGTCAATGAGGAGGGCACTGAGGCAGCTG +s armadillo.ENr122_1 308087 262 - 310133 CTTGAAGATAAGCTGACCGCTGAGAAATTAAAAGAGTGGGTGAGCTCACCAGTTATGCGCGAGAG---GCACG---TGCATCTGCAGTTACCTCGGTTCCGCCTGGAGGAGAGCTACGACCTCCCACCGCCGCTGCAGCACTTGGGGATGGTGCACGCCTTT------CAGGACGCCGACTTCTCTGGCATGACCGGGGGCCGGGATCTCAGAATATCTAAAATCCTGCACAAGTCCAGTGTGGAGGTGACGGAAGAGGGCACGGAGGCGGAGG +s elephant.ENr122_1 308272 268 + 383286 GTGGAAAAGGAACTTACATATGAGAAGTTCAAAGCCTGGACAAATCCAGAAAAGATGACTCCAAG---TAAAG---TTCAAGTTTTCCTTCCCCGGTTAAAGTTGGAGGAGAGTTATGACTTGGAGTCTTTTCTTCGGCGTTTAGGAATGACTGATGCTTTTGAGGAAGTCAAGGCTGACTTTTCTGGGTTGTCAACCGAGAAGAATGTGCCCGTGTCCAGGGTTGCACACAAGTGCTTCGTGGAGGTAAATGAGGAGGGCACAGAGGCAGCTG +s tenrec.ENr122_17 4174 268 + 6830 TTAGAAGAGGAACTGACCTACGAGAAGCTGCGAGCGTGGACAGACCCCGAGACGCTGACGCCCAG---GAAAG---CGGACGTGCTTCTCCCGCGACTGAGGCTGGCGGAGAGCTACGACCTGGAGCCCATCCTTCGGGGCCTGGGCATGACCGATGCCTTTGAAGAAGTTAAGGCCGACTTCTCCGGCATGTCTACCAAAAAGAACGTGCCCGTGTCCAAGGTGGCACACAAGTGCTTCATCGAGGTCAACGAGGAGGGCACCGAGGCGGCCG +s monDom1.scaffold_15171 1812291 268 - 2219062 CTAGAAAGAGAAATAACCTATGAAAAACTTACTGCATGGATCAAAAAAGCCACAATGGAGAGTAA---TGATG---TTCATGTGTTCCTGCCCAAATTCAAGATGGAAAAGAATTATGAATTCAAGTCCATCCTGCAGAGCATGGGGATGAATGATGCCTTTAGCAAAATTCAAGCCAATTTTTCAGGAATGTCAGAGAGTAATGATCTCTTTCTGTCTGAAGTGTTCCATCAAGCTTCAGTAGATGTCAATGAAGAGGGCACTGAGGCAGCTG +s platypus.ENr122_1 31120 268 - 72535 CTGGAAAATGAAATTACATATGAGAAGTTAAATGACTGGACTTGTGCTGACATGATGGATACAGG---TGAAG---TGCAAGTATATCTACCCAGATTCAAGATGGAAGAGAGTTATGACCTCAAATCCACACTGATCAGCATGGGAATGAGAGATCCCTTCAGTCAGGGCAGAGCTGATTTCTCTGGAATATCGGAGAGAAGAGATCTGTTCCTTTCGCATGTTTTTCATAAGGCTTTTGTGGAAGTCAATGAGGAAGGCACAGAAGCAGCAG +s galGal2.chr2 80207058 268 - 147590765 CTGGAGCAGCAGCTCACCTTAGAGAAGCTCCAGGAGTGGACACGTCCAGAGCATCTATATTCCAC---TGATG---TCCATGTGCATTTGCCAAAATTTAAGCTAGAAGAAAGCTATGACCTTAAATCAGATTTATCAGCTATGGGCTTGTTGGACATATTTGACAGTGCCAAGGCTGACTTGTCAGGAATGTCAGGGGCACACGACCTTTTCCTCTCTAAAATTGTCCACAAGGCTTTTGTAGAAGTGAACGAGGAAGGCACAGAAGCTGCAG +s tetNig1.chrUn_random 126447537 271 - 171761319 CTGGAAAATGAGCTGACTCGGGAGAAGCTTGACGAATGGACCAACAGAGAAAACATGGACGTCAGCTCTGAAG---TCCTCGTCCACCTGCCCAAATTTAAGCTGGAGGAAAACTACGAGATGAAGGAAGCTCTGGCCAAACTTGGCATGACCGACGTGTTCTGCGCAGGGAAGGCCGACCTGTCTGGTATGAACTCTGATGGAGGACTGTTCTTGTCCACGGTGGCCCATAAGGCCTTTGTGGAGGTGAACGAGGAGGGGACGGAGGCTGCTG +s danRer2.chr19 174107 268 + 52023587 CTTGAGAAGGCACTGACCTACGAGAAGCTCATGGAGTGGACCAAACCTAGCATGATGTGTCAACA---GGAAG---TACAAGTCTCTCTGCCCAAATTCAAGACGGAGCAAACCTACGACATGAAGAGTCTTCTGGTCAGCATGGGGATGGAGGATGTGTTTGACCCACAGAAGGTTAATCTAACAGGCATGTCCTCCAGCAATGACCTGGTGCTGTCCAAGGTCATTCATAAAGCCTTTGTTGAAGTCAATGAAGAAGGAACCGAAGCGGCTG + +a score=1509913.0 +s hg17.chr18 59600586 137 + 76117153 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAA--GGA------AATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGC +s panTro1.chr17 56457248 137 + 73346066 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAA--GGA------AATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGC +s baboon.ENr122_1 210387 137 + 593854 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGATAATCAA--GGA------AATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGTGC +s rheMac1.SCAFFOLD75029 42469 137 + 234848 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTATTCAGAGAGATGGATGATAATCAA--GGA------AATGGAAATGTGTTCTTTTCTTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGTGC +s marmoset.ENr122_1 176627 137 + 677515 ATGGCCTCCCTTGCTGCAGCAAATGCCGAGTTTTGCTTCAACCTGTTCAGAGAGATAGATAACAATCAA--GGA------AATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCACTGCCCTGGCCCTGGTCCGCTTGGGCGC +s galago.ENr122_1 63962 137 + 408645 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTTGCTTCAACTTGTTCCGAGAGATGGATAACAATCAA--GGA------AATGGAAATATGTTCTTCTCCTCTCTGAGCCTCTTCACTGCGCTGGCCCTGATCCGTCTGGGGGC +s rn3.chr13 13464817 137 + 111348958 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGTCAA--GGA------AACGGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGAGCCTAATCCGTTTGGGTGC +s mm6.chr1 107417121 137 + 195109612 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGCCAA--GGA------AATGGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGACCCTAATCCGTCTGGGTGC +s rabbit.ENr122_1 97853 137 + 384214 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTTGCTTCAATCTCTTCAGAGAGATGGATAACAATCAC--GGC------AATGGAAATGTGTTCTTTTCCTCTTTGAGCCTCTTCACTGCCCTGGCCCTGGTCCGTTTGGGTGC +s cow.ENr122_1 153037 137 + 707333 ATGGCCTCCCTCGCTGCAGCAGACGCGGACTTTTGCTTCAACCTGTTCAGAGAGATGGACAGCAGTCAA--GGG------GGTGAAAACGTGTTCTTTTCCTCTCTGAGCCTCTTCACTGCCCTGGCCCTGGTTCGTTTGGGTGC +s canFam1.chr1 108653495 137 - 124897793 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAATCTGTTCAGAGAGATGGATAACAATCAA--GGA------AGTGAAAATGTGTTCTTTTCTTCCCTGAGCATCTTCACTGCCTTGGCCCTGGTCCGTTTGGGCGC +s rfbat.ENr122_1 91022 137 + 374400 ATGGCCTCCCTTGCGGCAGCGAATGCAGAATTTTCCATCAACTTGTTCCAAGAGATGGATAACAATCAA--GCA------AGTGGAAATGTGTTCTTTTCCTCTCTGAGCATCTTCACTGCCCTGGCCATGATCCGTTTGGGCGC +s shrew.ENr122_4 15409 137 + 35451 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTTGCTTCAACCTGTTCCGAGAGATGGACAATAACCAA--GGC------ACTGGAAACGTCTTCTTCTCTTCTCTGAGCATCTTCACGGCCCTGGCCCTGGTCCGGCTGGGCGC +s armadillo.ENr122_1 58066 137 + 310133 ATGGGTTCCCTCAGCACAGCGAGTGTTGAATTTTGCTTTGATGTGTTCAAAGAGCTGAACAGTAACAAT--GGA------GGAGATAACATCTTCTTTTCTCCACTGAGTCTGCTTTATGCCCTAAGTATGGTCTTCCTTGGTGC +s elephant.ENr122_1 104200 137 + 383286 ATGGCCTCCCTTGCTGCAGCCAATGCAGACTTTTGCTTCAACCTGTTCAGAGAGTTGGACAACAATCAA--GGG------AATGGAAATGTGTTCTTCTCCTCTCTGAGCCTCTTCACTGCCCTGGCCCTGGTCCGTCTGGGGGC +s tenrec.ENr122_6 9033 137 - 12907 ATGGCCTCCCTTAGTGCAGCCAATGCAGAGTTTTGCTTCAACTTATTCCGCGAGATGGACAACAACCAG--GGG------AGTGGCAATGTCTTCTTCTCCTCTCTCAGCATCTTCACAGCGCTGGCGCTGATCCGCCTGGGGGC +s monDom1.scaffold_15171 1669190 143 - 2219062 ATGGTCTCCCTTGCTGCAGCAAATGCAGAATTTTGCTTTGATCTTTTCAAAGAGATGAACACCAGTCAA--GGAAATAGCAATGGCAACGTCTTCTTTTCTCCCCTGAGTATCTTCATTGCTCTGTCCCTGGTGCGAATGGGTTC +s platypus.ENr122_1 20523 137 - 72535 ATGGACACCCTATCGGCTTCAAACAATCAGTTTGCTCTTGATCTTAGCAAAAGGCTGGCTG--AATCAGCTGCA------GGAAAAAACATCTTCTTTTCCCCCTGGAGCATCTCTACCTCCCTGGCTATGGTCTATTTGGGTAC +s galGal2.chr2 80110486 137 - 147590765 ATGGGCTCCATCAGTGCAGCAAATGCAGAATTTTGTTTTGATGTATTCAATGAGCTGAAAGTCCAGCAC--ACA------AATGAGAACATCTTGTATTCCCCCTTGAGCATCATTGTAGCCTTGGCCATGGTCTATATGGGAGC +s tetNig1.chrUn_random 126454462 137 - 171761319 ATGGCAGCCATCAGCAGTTCAAACACAGCTTTTGCCTTGGACCTGCTCCGCATTCTGAGCCAAGGAAAT--CCC------AGTGGGAACATCTTCATGTCCCCGCTGAGCATCAGCTCGGCCCTGGCTATAGTTTATCTGGGAGC +s danRer2.chr20 28300259 137 - 59369745 ATGGAGGGAGTCTCTCGTGCTAACAGTCTCTTCGCTCTGGATCTCTATCGGGCTCTGAGCGCCAGCAGT--GCT------GAGGGAAACATCTTCTTTTCTCCATTGAGCATCAGTGCAGCGCTCAGCATGGTCTACTTGGGGGC + +a score=273348.0 +s hg17.chr18 59600723 31 + 76117153 TCAAGATGACTCCCTCTCTCAGATTGATAAG +s panTro1.chr17 56457385 31 + 73346066 TCAAGATGACTCTCTCTCTCAGATTGATAAG +s baboon.ENr122_1 210524 31 + 593854 TCGAGGTGACTGTGTCTCTCAGATTGATAAG +s rheMac1.SCAFFOLD75029 42606 31 + 234848 TCGAGGTGACTGTGTCTCTCAGATTGATAAG +s marmoset.ENr122_1 176764 31 + 677515 TCGAGGCGACTGTGTCTCTCAGATTGACAAG +s galago.ENr122_1 64099 31 + 408645 TCGAGGTGACTGTGCTTCTCAGATTGATAAG +s rn3.chr13 13464954 31 + 111348958 TCGAGGTGACTGTGCACGTCAGATTGACAAG +s mm6.chr1 107417258 31 + 195109612 TCGAGGTGACTGTGCACGTCAGATTGACAAG +s rabbit.ENr122_1 97990 31 + 384214 CAGAGGTGACTGTGCAGCTCAGATTGATAAG +s cow.ENr122_1 153174 31 + 707333 GAGGGGTGACTGTGCTTCTCAGATTGATAAG +s canFam1.chr1 108653632 31 - 124897793 ACGGGGTGATTGTGTTTCCCAGATTGATAAG +s rfbat.ENr122_1 91159 31 + 374400 GCGAGGTGACTGTGCTTCTCAGATTGATAAG +s shrew.ENr122_4 15546 31 + 35451 GCGGGGTGATTGTGCTGCCCAGATTGATAAG +s armadillo.ENr122_1 256069 31 + 310133 AAGAGGAAACACAGCTGCCCAGATGTCTGAG +s elephant.ENr122_1 104337 31 + 383286 CCGAGGGGACTGTGCAGCTCAGATTGATAAG +s tenrec.ENr122_6 9170 31 - 12907 TCGAGGGGACTGTGCATCTCAGCTGGATCAG +s monDom1.scaffold_15171 1669333 31 - 2219062 CAGAGGTGACTGCGCAAAGCAAATTGATAAG +s platypus.ENr122_1 20660 31 - 72535 AAAAGGTAATACTGCTGCTCAGATAGTGGAG +s galGal2.chr2 80110623 31 - 147590765 AAGAGGCAACACTGAGTACCAGATGGAGAAG +s tetNig1.chrUn_random 126454599 31 - 171761319 TAAAGGAGACACGGCAGCACAGATGGCTCAG +s danRer2.chr20 28300396 31 - 59369745 CCGAGGAGACACTGCTGGAGAAATGGAGAAG + +a score=2569019.0 +s hg17.chr19 59068595 572 + 63811651 ATGCCAGTGACGGTAACCCGCACCACCATCACAACCACCACGACGTCATCTTCGGGCCTGGGGTCCCCC-ATGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGCTGGTGTCTACCTGCGTGGCCTTCTCGCTGGTGGCTAGCGTGGGCGCCTGGACGGGGTCCATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTATGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCACCACCTATGTCCAGTTCCTGTCCCACGGCCGTTCGCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGCCACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTTCGCGTTCAT +s panTro1.chr20 56482145 572 + 61571712 ATGCCAGTGACGGTAACCCGCACCACCATCACAACCACCACGACGTCATCTTCGGGCCTGGGGTCCCCC-ACGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGCTGGTGTCTACCTGCGTGGCCTTCTCGCTGGTGGCTAGCGTGGACGCCTGGACGGGGTCCATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTACGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCACCACCTATGTCCAGTTCCTGCCCCACGGTCGTTCGCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGCCACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTCGCGTTCAT +s rheMac1.SCAFFOLD6742 16271 573 - 16848 ATGCCAGTGACGGTCACCCGCACCACCATCACGACCACCACGACGTCGTCCTCGGGCCTGGGGTCCCCCCACGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGCTGGTGTCTACCTGCGTGGCCTTCTCACTGGTGGCTAGCGTTGGCGCCTGGACGGGGTCCATGGGCAACTGGTCTATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTATGCGGCCCTCTTCTGCCTCTCCGCCTCCATCATCTACCCCACCACCTACGTCCAGTTCCTGTCCCACGGCCGTTCCCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCTTGTGTGGCTTATGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTACATGGCCACCGTGCCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTCGCGTTCAT +s marmoset.ENm007_1 83810 572 + 816697 ATGCCAGTGACGGTTACCCGCACAACTGTCACGACTACCATGACGACGTCCTCGGGCCTGGGGTCCCCC-ACCATCGTGGGGTCCCCTCGTGCCCTGACCCAGCCCCTGGGTCTCCTTCGCCTGCTGCAGCTGGTGTCCACCTGCGTGGCCTTCTCTCTGGTGGCCAGCGTGGGTGCCTGGACGGGGTTCATGGGTAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACTCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACGTTCGCCTGCTATGCGGCCCTCTTCTGCCTCTCAGCCTCCATCATCTACCCCACCACCTATGTCCAGTTCATGTCCCACGGCCGTTCCCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCGTTGCCTGCGTGGCTTATGCCACCGAAGTGTCCTGGACCCGGGCACGGCCGGGCGAGATCACAGGCTACATGGCCACCGTGCCGGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTTGTCTTCAT +s galago.ENm007_1 4643 572 + 1097823 ATGCCGGTGACAGTGACCCGCACAACCATCACGACCACCACGTCGTCCTCCTCCGGCCTGGGGTCCCCA-GCCATCGTGGGGTCTCCTCGGGCCCTGGCACATCCCTTGGGCCTCCTCCGCTTGCTGCAGCTGCTGTCCACCTGCATAGCCTTCTCACTGGTGGCCAGCGTGGATGCCTGGACAGGGCCCATGGGTAACTGGTCCATGTTCACCTGGTGCTTCTGCTTTGCCGTGACCCTGGTCATCCTCATCATCGAGTTATGTGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTTGCCTGCTACGCAGCCCTCTTCTGCCTCTCAGCCTCCATCATCTACCCAACTACCTACGTCCAGTTCATGTCTCACGGCCGATCTCGGGACCACGCCATTGCCGCCACCTTTTTCTCCTGCATCGCTTGCGTGGCTTACGCCACTGAAGTGGCCTGGACCCGGGCACGGCCCGGTGAGATCACTGGCTACATGGCCACTGTGCCAGGGTTGCTCAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTCGCGTTCAT +s rn3.chr1 203863650 554 - 268121971 ATGCCGGTCACAGTCACCCGTACAACCATCACAACTACATCATCA------------------TCCTCC-ACCACTGTGGGGTCCGCCCGGGCGCTGACCCAGCCCCTGGGCCTCCTCCGCCTCCTGCAGCTAGTATCCACCTGTGTGGCTTTCTCACTGGTGGCCAGTGTGGGTGCTTGGACAGGGCCCATGGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGATTCCAGGCCCGCTTCCCCCTGTCATGGCGAAACTTCCCTATCACCTTCGCCTGTTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCACCACCTACGTGCAGTTCCTACCTCACGGACGTTCCCGGGACCACGCCATCGCTGCCACCACCTTCTCCTGCGTTGCCTGTTTGGCGTATGCTACTGAAGTGGCCTGGACTCGTGCAAGGCCTGGTGAGATCACTGGCTACATGGCTACCGTGCCAGGGCTGCTCAAAGTGTTCGAGACCTTCGTAGCCTGCATCATCTTTGCCTTCAT +s mm6.chrUn_random 15658799 554 - 81221341 ATGCCGGTAACAGTAACTCGTACAACCATCACGACTACAACGTCA------------------TCCTCC-ACCACTGTGGGGTCCGCTCGGGCGCTGACCCAGCCGCTGGGCCTCCTCCGCCTCCTGCAGCTAATATCCACCTGTGTGGCTTTCTCGCTGGTGGCCAGTGTGGGTGCCTGGACAGGGCCCATGGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGACTCCAGGCCCACTTCCCCCTGTCATGGCGAAACTTCCCCATCACCTTTGCCTGCTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCACCACCTATGTGCAGTTCCTAGCTCATGGACGTACCCGGGACCATGCCATCGCTGCCACCACTTTCTCCTGCGTTGCCTGTTTGGCGTATGCCACTGAAGTGGCCTGGACCCGTGCAAGGCCCGGTGAGATCACTGGCTATATGGCTACCGTGCCAGGGCTGCTCAAAGTTTTTGAGACCTTCGTAGCCTGTATCATCTTTGCCTTCAT +s canFam1.chr1 18886888 572 - 124897793 ATGCCTGTGACGGTGACCCGCACGACCATCACAACCACCACGTCGTCATCCTCAGGCCTGGGCTCCCCA-ACCATCGTGGGGTCCCCTCGGGCGCTGACCCAGCCCCTGGGCCTCCTCCGTCTGCTGCAGCTGCTGTCCACCTGTGTGGCCTTCTCCCTGGTGGCCAGTGTGGGTGCTTGGACCGGGGCCATGGGCAACTGGTCCATGTTCACATGGTGCTTCTGCTTCGCTGTGACCCTCATCATCCTAATAGTCGAGTTAGGTGGCCTCCAGTCCCGCTTCCCCCTGTCCTGGAGAAACTTCCCCATCACCTACGCCTGCTACGCTGCCCTCTTCTGCCTGTCGGCCTCCATCATCTACCCCACCACCTACGTTCAGTTCCTGTCTCATGGCCGCTCCCGGGACCATGCCATCGCCGCCACTGCCTTCTCCTGCATCGCTTGTGTGGCTTATGCCACCGAAGTGGCCTGGACCCGGGCCCGTCCCGGAGAGATCACCGGCTACATGGCCACTGTGCCGGGCCTGCTCAAGGTGCTGGAGACCTTTGTGGCCTGCATCATCTTCGCCTTCAT +s elephant.ENm007_39 32502 572 - 37667 ATGCCGGTGACGGTGACCCGCACGACCATCACGACCACGACATCGTCGTCCTCGGGCCTGGGCTCCCAC-ACCATTGTTGGGTCCCCTCGGGCATTGACCCAGCCCCTGGGCCTCCTCCGTCTGTTGCAGCTGCTGTCCACCTGTGTCGCCTTCTCTCTGGTGGCCAGTGTGAACGCCTGGACAGGGCCCATGGGTGACTGGTCCATGTTCACCTGGTGCTTCTGCTTTGCCGTGACCCTGATCATTCTCATCGTCGAGGTCGGCGGCCTCCAGCCCCGATTCCCCCTGTCCTGGCGCAACTTCCCCATCACGTACGCCTGCTACGCTGCCCTCTTCTGCCTCTCCACCTCCATCATCTACCCCACCACCTACGTCCAGTTCCAGCCCCACGGCCGTGTTCGGGACCACGCTATCGCCGCCACTGTCTTCTCCTGCATAGCTTTCGTGGCTTATGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCTGGTGAGATCACAGGATACATGGCTACTGTACCAGGGCTGCTCAAGGTGCTGGAGACCTTTGTGGCCTGTGTCATCTTCGCCTTTCT +s tenrec.ENm007_2 1557 572 - 7471 ATGCCGGTGACGGTGACCCGCACAACCATTACGACCACCACATCGCCGGCCGCGGGCCTGGGCTCCCCC-ACCATCGTGGGGTCCCCGAGGGCGCTGACCCAGCCCCTGGGCCTTCTGCGTCTGCTGCAGCTGCTGTCTACCTGCATCGCCTTCTCCCTGGTGGCCAGTGTGGGCGCCTGGACGGGGTCCATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTTTCCGTGACCCTGATCATCCTCATCGTGGAGGTGTTCGGCTTCCAGCAGCGATTCCCGCTCTCCTGGCGCAACTTCCCCATCACCTTCGCCTGCTACGCAGCCCTCTTTTGCCTCTCCACTTCCATCATCTACCCCACCACCTACGTCCAGTTCCTGCCCCACGGCCGCGTGCGGGACCACGCCATCGCAGCCACCACCTTCTCCTGCGTGGCCTTCCTGGCTTACGCCCTCGAGGTGACCTGGACCCGCGCCCGCCCGGGCGAGATCACGGGCTACATGGCCACCGTGCCGGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTCGCCTTCAT +s monDom1.scaffold_12105 6407 572 + 38894 ATGGCGGTGACTGTGACCCGCACCACGGTGACCACCACCACCACCACCTCCTCCAGCCTGGGCTCCCCC-TACGTGGTGGGCTCTCCTCGGGCGCTGACGTCCAAGCTGGGCCTCCTGCGCCTGCTGCAGCTCGTGTCCACGTGCGTGGCCTTCTCCCTGGTGGCGCACGTGGGGGCCTGGGACGGGGTCATGGGCCACTGGGCCATGTTCGCCTGGTGTTTCTGCTTCGCCATGACGCTGGTGATCCTGGTGGTGGAGGTGGGCGGCCTGCAGCCGCGATTCCCGCTCTCGTGGCGCAACTTCCCCATCGCCTACGCCTGCTACGCCACGCTGCTGTGCCTGTCGGCCTCCATCATCTACCCCACCACGTACGTGCAGTTCATGGGCGAGGGCCAGAGGCGGGACCACGCCATCGCCGCCACCTTCTTCTCGTGCGTGGCCTCCGTGGCCTACGCCGTGGAGGTGGCCTGGACCCGAGCCCGGCCGGGGGAGGTCACGGGCTACATGGCCACCGTCCCCGGCCTGCTCAAGGTCTTCGAGACCTTCGTGGCCTGCATCATCTTCGCCTTCGC +s platypus.ENm007_2 6254 569 - 22795 ATGCCAATCACGGTCACCCGCACGACCATCACCACCACCAATATGTCGTCCAGCGGC---GGCAATCAC-ACTATCGTGGGTTCCCCCCGGGCTCTGACGACTCCGCTGGGCATCGTCCGCCTGCTCCAGCTACTCTTCACCTGCATCGCCTTCTCCCTGGTGGCCCACATTGGTGGGTGGTTTGGCCCCATGGGAGACTGGTGCATGTTCTCCTGGTGCTTTTGCTTCGCCATGACGCTCGTCATCCTCCTGGTGGAGATGGGAGGGCTCCAGCCACGGGTCCCCGTGTCCTGGCGCAACTTTCCCATCACCTTTGCCTGCTATGCGGCCCTCTTCTGCCTCTCCGCCTCCATCATCTACCCGGTCACCTTCATCAAACACCACGATAAAAGCGAGGAGAAGGACTGTAGGATTGCCGCCACGGTCTTCTCCATCCTCGCCTTCCTGGCCTACACCACTGAGGTTTGCTGGACCCGAGCCCGCCCAGGTGAGGTGACGGGCTACATGGCGACCGTGCCGGGCCTCCTGAAGGTGGTGGAGACCTTCGTGGCTTGCATCATCTTCGTCTTCAT + +a score=1177830.0 +s hg17.chr19 59069167 392 + 63811651 CAGCGACCCCAACCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACCGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCG------CAGCCATG------CCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCTGCCCACCTGGTTTTTGTCAAGG +s panTro1.chr20 56482717 392 + 61571712 CAGCGACCCCAACCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACTGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCG------CAGCCATG------CCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCTGCCCACCTGGTTTTTGTCAAGG +s marmoset.ENm007_1 84382 392 + 816697 CAGCAGCGCCCACCTGTACCAGCACCAACCCGCCCTGGAGTGGTGCGTGGCAGTCTACGCCATCTGCTTCATCCTTGCGGCCGTCGCCATCCTGCTGAACCTGGGAGAGTGCACCAACGTGCTGCCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTACGCCACTGCCCTCGTCCTCTGGCCACTCTACCAGTTCGACGAGAAGTATGGCGGCCAGCCCCGGCGCGCGCGAGATGTGGGCTGCGGCAG------CCGGCACA------ACTACTACGTGTGTGACTGGGACCGCCGGCTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCCGACCTGGTGTACTCTGCCCACCTGGTTTTTGTCAAGG +s galago.ENm007_1 5215 392 + 1097823 CAGCAGCCCCTACCTGTACCAGCACAAACCTGCCCTGGAGTGGTGTGTGGCAGTGTACGCCATCTGCTTCATACTGGCAGCTGTTGCCATCCTGTTGAACCTGGGGGACTGCACCAACATGTTGCCCATCCCCTTCCCTAGTTTCCTTTCAGGACTGGCCTTGTTGTCTGTCCTCTTCTATGCCACTGCCCTTGTCCTCTGGCCCCTCTACCAGTTTGATGAAAGGTATGGTGGCTATCCTCGGAGGTCAAGAGATGTGGGTTGCAGTAA------CAGGCACT------CCTACTACGTGTGTGACTGGGACCGCCGACTGGCTGTGGCTATTTTGACAGCCATCAACCTGTTGGCATATGTGGCTGACTTGGTGTACTCTGCCCGCCTGGTTTTTGTTAAAG +s rn3.chr1 203864204 398 - 268121971 CAGTGAGCCGAGCCTGTACCAGCAAAGGCCGGCCCTGGAATGGTGTGTGGCAGTCTATGCCATCTGCTTCATCCTAGCAGCAGTGACCGTCCTACTCAACCTGGGGGATTGTACCAACATGCTGCCCATCCCTTTCCCTACCTTCCTGTCAGGCCTGGCCTTACTGTCTGTGCTCCTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGGTATAACAGCCAACCCCGCCGTTCAATGGATCCAAGCTGCTCTCG------TAGTTATGTACAACCCAATGAAGTGTGTAACTGGGACCGACGGCTGGCGGTGTCCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTATTCCACCCGTCTGGTGTTCGTCAAGG +s mm6.chrUn_random 15659353 404 - 81221341 CAGTGAGCCGCTCCTGTATAATCAGAAGCCAGCCCTGGAGTGGTGTGTGGCAGTCTATGCCATCTGCTTCATACTAGCAGGGGTGACCATCCTGCTCAACCTGGGGGATTGTACCAACGTGTTGCCCATCCCTTTCCCCACCTTCCTCTCAGGCTTGGCCTTACTCTCTGTTCTCTTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGATATCAGGGCCAACCCCGCCGTTCAATGGATCCAAGCTGCACTCGTAGTATTAGTTATATACAACCCAACACGGTGTGTTTCTGGGACCGACGACTGGCGGTGTCCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTACTCCACTCGTCTGGTGTTCGTCAAGG +s canFam1.chr1 18887460 392 - 124897793 CAGCAACCCCTCCCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGTGTGGCCGTCTACTCCATCTGTTTCATCCTGGCGGCTGTGGCCATCCTACTGAACCTGGGGGACTGCACCAACATGCTGCCCATCTCCTTCCCCAGTTTCCTGTCGGGCCTGGCCCTGCTCTCCGTCCTGCTGTATGCCACGGCTCTGGTTCTCTGGCCGCTCTACCAGTTCAACGAGAAGTATGGTGGCCAGCCCCGTCGGTCGAGGGATGTTAGCTGCGCCGA------CAGGCACA------CCTACTACGTGTGTACCTGGGACCGCCGCCTGGCTGTGGCCATCCTGACAGCCATCAACCTGCTGGCTTACGTGGCTGACCTGGTGTACTCGGCCCGCCTGGTTTTTGTTAGGG +s elephant.ENm007_39 33074 392 - 37667 CAGTGACCCCGGTCTGTACCAGCACCACCGGGCGCTGGAGTGGTGCGTGGCTGTGTACGCCATCTGCTTCATCTTGGCAGCCGTGGCCATCCTACTGAACCTGGGCGACTGCACCAATGCGCTGCCCATCTCCTTCCCCAGCTTTCTTTCAGGGCTGGCCTTGCTCTCCGTCCTCCTCTATGCCACCGCCCTTGTCCTCTGGCCCCTCTACCAATTCGATGAGCGCTATGGTGGCCAGCCCCAGCGGCGCAAGGATAGGTCCTGTGGCAG------CTCACACA------ACTACTATATCTGTGGCTGGGACCGCCGGCTGGCCATTGCCATCTTGACAGCCGTCAACCTGCTGGCCTATGTGGCTGACCTGGTGTACTCTGCCCGCCTGGTTTTTGTCAGGG +s tenrec.ENm007_2 2129 392 - 7471 CAGCGACCCCTACCTGTACCAGTCCCAGGCGGCGCTGGAGTGGTGCGTGGCCGTCTATGCCATCTGCTTCATCCTGGCGGCGGTGGCCATCTTGCTGAACTTAGGCGACTGCACCAATGCGCTGCCCATCTCCTTCCCCACCTTCCTCTCGGTGCTGGCCTTCCTCTCCGTCATCCTCTACGCCACCGCCCTCGTCATCTGGCCCCTCTACCAGTTCAACGAGCGCTACGGCGGCCAGCCCCGGAGAGGCAGGGATGTGTCCTGCAGCAG------ATCACACG------CCTACTACGTCTGCACCTGGGACCGCAAGCTGACGGTCGCCATCTTGACCGGCATCAACCTGCTGGCCTACTTGGTCGACCTGGCCTACTCCAGCCGCCTGGTCTTCGTCAAGG +s monDom1.scaffold_12105 6979 392 + 38894 CAGCGACCCGCCTATCTACCGGCGCCACTCGGCGCTCGAGTGGTGCCTGGCCGTCTACTGCATCTGCTTCATCCTGTCGGCCGTGGCCATCCTCCTGAGCCTGGGCGACTGCACGGGCCAGCTGCCCGTCTCCTTCCCCAGCTTCCTCACGGGCCTGGCCGTCCTGGCCGTGGCCCTCTACGCCTCGGCCCTGGTGCTCTGGCCTCTCTACCAGTTTGACGACCGCAAGGGCGGCCGGCCGCGCAGGCGGGACGACTCGGGCTGCCCCCG------GCACCACG------CCTTCGCCGTGTGCGACTGGGATCGCCGGCTGACCGTGGCCATCCTCACGGCCGTCAACTTCCTGGCCTACGTGGCCGACCTGGTGTACTCGGCCCGGCTGGTCTTCATCCGGG +s platypus.ENm007_2 6823 380 - 22795 CAGCGACACCAATTCCTACGAGCGCCACGGAGCCCTCAAGTGGTGCCTGGCCGTCTACTGCATCTTCTTCATCCTTTCTCTGGCGGCCATTCTGCTCTGTGTGGGCGAATGCACCAGCTGGCTCCCCTGCTCTTTCCACACTTTCCTCAGTGGCTACACGCTCCTGGCCGTCCTGGCCTATGCCACCGCCACGGTCCTCTGGCCACTGTACCAGTTCAGCCATCGGTATGGGGGCCAGAGCCGGC------------CAAATCACTGCCT------TCGGGAAT------ACGGTACCTTATGCTTCTGGGACAAGCTGTTGGTGGTGGCTGTGCTGACCGCCGTCAACTTGCTGGCCTACTTGGCTGACCTGATTCACTCTGCCCGGCTCATCTTCGTCCACG + +a score=-160357.0 +s hg17.chr19 59069559 5 + 63811651 TCTAA +s panTro1.chr20 56483109 5 + 61571712 TCTAA +s marmoset.ENm007_1 84774 5 + 816697 TCTAA +s galago.ENm007_1 5607 5 + 1097823 TCTAA +s rn3.chr1 203864602 5 - 268121971 TCTAA +s mm6.chrUn_random 15659757 5 - 81221341 TCTGA +s canFam1.chr1 18887852 5 - 124897793 TTTGA +s elephant.ENm007_39 33466 5 - 37667 TCTGA +s tenrec.ENm007_2 2521 5 - 7471 TCTGA +s platypus.ENm007_2 7203 5 - 22795 TGTGA + +a score=79744.0 +s hg17.chr19 4575595 30 - 63811651 TCTCATGAATATGCGGCACTGAAAGTGTAG +s panTro1.chr20 4891556 30 - 61571712 TCTCGTGAATATGCGGCACTGAAAGTGTAG +s baboon.ENm007_1 752663 30 - 895810 TCTCATGAATATGCGGCAGTGAAAGTGTAG +s rheMac1.SCAFFOLD86224 9271 30 + 11837 TCTCATGAATATGCGGCAGTGAAAGTGTAG +s marmoset.ENm007_1 582445 30 - 816697 TCTCACGAATATGTGGCACTGAAAGTGTAG +s galago.ENm007_1 965809 13 - 1097823 -----------------ACTGAAAGTATAG +s rabbit.ENm007_9 18130 30 - 43722 GCCTCTGAGCATGCGGCAGTGACCGTGTAG +s canFam1.chr1 105902916 30 + 124897793 TCTTGTGAATGTGCAGTGCGGCAGGTGAAG +s armadillo.ENm007_1 132025 30 - 133630 GACTCTGAGTATTCGGCAGTGAAGGCATAG +s elephant.ENm007_36 2 29 + 1066 -CTTGTGAATGTGCAGCCCTGAAGGTGTAG +s tenrec.ENm007_21 2731 20 + 10095 CCCGACGA----------CCGACGGAGTGG + +a score=154755.0 +s hg17.chr19 4575505 90 - 63811651 ACGGCAGACC---CCCAAGGAGTGACCTAT-GCTGAGCTAAGCACCAGCGCCCTGTCTGAGG---CAGCTTCAG-ACACCACCCAGGAGCCCCCAGGA +s panTro1.chr20 4891466 90 - 61571712 ACGGCAGACC---CCCAAGGAGTGACCTAT-GCTGAGCTAAGCACCAGCGCCCTGTCTGAGG---CAGCTTCAG-ACACCACCCAGGAGCCCCCAGGA +s baboon.ENm007_1 752573 90 - 895810 ACGGCGGACC---CCCAAGGAGTGACGTAT-GCTGAGCTAAACATCAATGCCCTGTCTGAGG---CAGCTTCTG-ACACCACCCAGGAGCCCCCAGGA +s rheMac1.SCAFFOLD86224 9181 90 + 11837 ACGGCAGACC---CCCAAGGAGTGACGTAT-GCTGAGCTAAACATCAATGCCCTGTCTGAGG---CAGCTTCTG-ACACCACCCAGGAGCCCCCAGGA +s marmoset.ENm007_1 582355 90 - 816697 ACCGCAGACC---CCCAAGGAGTGACCTCT-GCTGAGCTAAGCACCCACGCCCTGTCTGAGG---CAGCTGCTG-ACACTACCCTGGAGCCCCCAGGA +s galago.ENm007_1 965723 86 - 1097823 GCTGAAGACCTGGCCCAAGGAGTGACCTTT-GCTGAGTTAAATGCCAATGCGCCAACCGAGG---CAGTTTCTG-TCCCCACTGAGGAGTC------- +s rabbit.ENm007_9 18048 82 - 43722 --------CC---TCCAGGGAGTGACCTGT-GCTGAACTAAACCCTACTGCAC---CTGAGGACACGGCTTCTG-TGCCCACTGAGGAGCCCCCAGGC +s canFam1.chr1 105902833 83 + 124897793 --------CC---CCCAGGGAGTGAGCCAT-GCTGATCTAAACCCCAAGGCACCACCTAAGG---CAGCTTCTGTGCCCCACCGAGGAGTCCCCAGGA +s armadillo.ENm007_1 131935 90 - 133630 GCTGCAGAAC---CGGATGGGGTCGACTAT-GTTGAGCTGGACCCTGGAGCCCTAAGCCAGG---GCCCTCCAG-GCTTTAAGGAGCAGCCTCTTGAG +s tenrec.ENm007_21 2643 88 + 10095 TCTGCAGA-----CCTGGGAAGTGACCTAGAGCCAAGGTGAACTCAAGGATGCTGTGCGAGC---CAGCGTGGC-TCTTCAC-AGGGAGCCCGTACAC + +a score=135801.0 +s hg17.chr19 59297998 10 + 63811651 ATGGCTGCGA +s baboon.ENm007_1 200279 10 + 895810 ATGGCTGCGA +s marmoset.ENm007_1 275329 10 + 816697 ATGGCCGCGA +s galago.ENm007_1 197685 10 + 1097823 ATGGCTGCTA +s rn3.chr1 204132123 10 - 268121971 ATGGCTGCTA +s mm6.chr7_random 9786029 10 + 31620006 ATGGCCGGGA +s rabbit.ENm007_18 885 10 + 4309 ATGGCTGGGA +s canFam1.chr1 19108689 10 - 124897793 ATGGCCGGGA +s shrew.ENm007_17 37425 10 + 37525 ATGGCCGGGA +s armadillo.ENm007_1 50684 10 + 133630 ATGGCTGCGA +s elephant.ENm007_47 7981 10 + 14112 ATGGCGGCTA +s tenrec.ENm007_16 7619 10 + 8364 ATGGCGACGA +s monDom1.scaffold_14939 33568 10 - 261239 ATGGCAGGCA +s platypus.ENm007_3 12247 10 - 65209 ATGGCGGCGA + +a score=627044.0 +s hg17.chr19 4509373 110 - 63811651 AGGAAGACTTTGGCTTTGA-------AGCAGA--------TGAGGCCCT-GGATTCCAGTTGGGTTTCTCGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTGGCCAGCCCAGCCTCTGAC-TGA +s panTro1.chr20 4827682 110 - 61571712 AGGAAGACTTTGGCTTTGA-------AGCAGA--------TGAGGCCCT-GGATTCCAGTTGGGTTTCTCGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTGGCCAGCCCAGCCTCTGAC-TGA +s baboon.ENm007_1 692428 110 - 895810 AGGAAGACTTTGGCTTTGA-------AGCAGA--------TGAGGCCCT-GGATTCCAGCTGGGTTTCTCGGGGTCCAGATAAACTGCTGCCCTACCCAACTCTGGCCAGCCCAGCCTCTGAC-TGA +s rheMac1.SCAFFOLD11117 19131 110 - 19659 AGGAAGACTTTGGCTTTGA-------AGCAGA--------TGAGGCCCT-GGATTCCAGCTGGGTTTCTCGGGGTCCAGATAAACTGCTGCCCTACCCAACTCTGGCCAGCCCAGCCTCTGAC-TGA +s marmoset.ENm007_1 537662 110 - 816697 AGGAAGACTTTGGCTTTGA-------AGCAGA--------CGAGGCCCT-GGATTCCAGTTGGGTGTCTCGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTAGCCAGCCCACCCTCTGAT-TGA +s galago.ENm007_1 897271 110 - 1097823 AGGAAGACTTTGCCTTTGA-------AGCAGA--------TGAGGCTCT-GGATTCCAGTTGGGTTTCTCGGGGGCCAGATAAACTGCTGCCCTACCCTACCCTAGCCAGCCCACCCTTTGAT-TGA +s rn3.chr1 63986932 110 + 268121971 AGGAAGACTTTGGCTTTGA-------AGCAGA--------TGAGGCCTT-GGATTCAAGTTGGGTTTCCCGAGGGCCAGACAAATTGCTACCCTACCCTACCCTAGCTAGCCCACCCTTTGAC-TAA +s mm6.chr7_random 21830910 110 - 31620006 AGGAAGACTTTGGCTTTGA-------AGCAGA--------TGAGGCCTT-GGATTCAAGTTGGGTTTCCCGAGAGCCAGACAAATTGCTACCCTACCCTACCCTGGCCAGCCCACCCTTTGAC-TAA +s rabbit.ENm007_36 3663 126 - 45741 AGGCAGCCTGTGGCTTGGAGCTGGCCAGCAGCGGTTGGGTTGGGGCCCTCGGACCCCAGCTGCTTCCCCCAGCCGCCCACCCACCTCCCACCATAGCTGACTGTGGCAGCTTCAGCCCCAGGC-CAC +s canFam1.chr1 105786677 110 + 124897793 AGGAAGACTTTGGCTTCGA-------AGCAGA--------TGAGGCCCT-GGACTCCAGTTGGGTTTCTCGGGGGCCAGACAAACTGCTGCCCTACCCCACCCTAGCCAGTCCCCCATTTGAC-TGA +s armadillo.ENm007_1 80469 110 - 133630 AGGAAGACTTTGGCTTTGA-------AGCAGA--------CGAGGCTCT-GGATTCAAGCTGGGTTTCTCGGGGGCCAGACAAACTCCTACCATACCCCACCCTAGCCAGCCCCCCCTTTGAC-TGA +s elephant.ENm007_47 2665 110 - 14112 AGGAAGACTTTGGCTTCGA-------AGCGGA--------TGAGGCCCT-GGATTCAAGCTGGGTGTCTCGGGGGCCAGACAAACTGCTGCCCTACCCCACCTTGGCCAGCTCCCCCTTCGAC-TAA +s monDom1.scaffold_14939 226434 111 + 261239 AGGATGACTTCAGCTTCGA-------GCCAGA--------TGAGGCCCT-CACCACAGGCTGGGCAGCCCGAGGCCCTGACAAACTGCTCTCCTACCCCACTCTGGCCAGCCCTCCCTTTGACATTA +s platypus.ENm007_4 8717 110 - 9157 AAGACGATTTTGGCTTTGA-------ACCCGA--------AGAAACGCT-GGGCTCGAGCTGGGCCTCCCGGGGCTCTGACAAGCTGCTCCAGTATCCCGGCCTGGTCAGTCCTCCCTTTGAC-TGA + +a score=127897.0 +s hg17.chr19 4509363 10 - 63811651 ATTAAGGTTG +s panTro1.chr20 4827672 10 - 61571712 ATTAAGGTTG +s baboon.ENm007_1 692418 10 - 895810 ATTAAGGTCG +s rheMac1.SCAFFOLD11117 19121 10 - 19659 ATTAAGGTCG +s marmoset.ENm007_1 537652 10 - 816697 ATTAAGGTCG +s galago.ENm007_1 897261 10 - 1097823 ATTAAGGTTG +s rn3.chr1 63986922 10 + 268121971 ATTAAGGTCG +s mm6.chr7_random 21830900 10 - 31620006 ATTAAGGTTG +s canFam1.chr1 105786667 10 + 124897793 ATTAAGGTCG +s armadillo.ENm007_1 80459 10 - 133630 ATTAAGGTCG +s elephant.ENm007_47 2655 10 - 14112 ATCAAGGTCG +s monDom1.scaffold_14939 226424 10 + 261239 ATCAAAGTTG +s platypus.ENm007_4 8707 10 - 9157 ATCAAAACCG + +a score=715836.0 +s hg17.chr2 118288583 85 + 243018229 ATGTCACACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGC---------------------GGAACC------TAAAGTTTCAGG +s panTro1.chr13 4310009 85 + 134309081 ATGTCTCACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGC---------------------GGAACC------TAAAGTTGCAGG +s baboon.ENr121_1 351346 85 + 685430 ATGTCTCACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAATCTCAAATTGCGGCAGC---------------------GGAACC------TAAAGTTGCAGG +s rheMac1.SCAFFOLD80271 32809 85 + 65232 ATGTCTCACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGCAACCTCAAATTGCGGCAGC---------------------GGAACC------TAAAGTTGCAGG +s marmoset.ENr121_1 367855 106 + 725777 ATGTCTCACCTGCCGATGAAACTCCTGCGCAGGAAGATCGAGAagcggaacctcaaattgcggcagcggaacctaaagttgcagcagtggaacc------taaagttgcagG +s galago.ENr121_1 343029 85 + 644928 ATGTCTAACCTGCCCATGAAACTCCTGCGCAAGAAGATCGAGAAGCGGAACCTCAAGTTGCGGCGGC---------------------GAAACC------TAAAGCTGCAGG +s rn3.chr13 77744300 85 - 111348958 ATGTCGCAGTTACAGATGAAACTCCTGCGCAAGAAGATCGAAAAGCGGAACGCCAAGCTGCGGCAAC---------------------GGAACC------TGAAGCTGCAAG +s mm6.chr1 73778529 85 - 195109612 ATGTCGCAGTTACAGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAATGCCAAGCTGCGGCAGC---------------------GAAACC------TGAAGCTGCAAG +s cow.ENr121_1 270963 85 + 402711 ATGTCTCATTTACCGATGAAACTTCTACGCAAGAAGATCGAGAAGCGGAACCTCAAATTGCGACAAC---------------------GAAACC------TAAAGCTCCAGG +s canFam1.chr19 21837737 84 - 56914383 ATGTCCCATCTACCCATGAAACTCCTGCGCAAGAAGATAGAGAAACGGAATCTCAAGTTGCGCCAGC---------------------GAAACC------TGAAGCTCCGG- +s rfbat.ENr121_1 261821 85 + 531148 ATGTCTCATCTACCGATGAAACTCCTGCGCAAGAAGATCGAGAAGCGCAACCTCAAACTGCGACAGC---------------------GGAACC------TAAAGCTACAGG +s armadillo.ENr121_1 268362 85 + 538776 ATGTCTCACCTACAGATGAAACTCCTGCGCAAAAAGATCGAGAAGCGGAATTTAAAATTGCGGCAGC---------------------GAAATC------TAAAGCTACTGG +s elephant.ENr121_1 174761 85 + 500612 ATGTCTCACCTACCGATGAAGCTCCTGCGCAAGAAGATCGAGAAGCGGAACCTGAAGTTGCGGCAGC---------------------GAAACC------TAAAGCTCCAGG +s tenrec.ENr121_24 16184 85 - 20207 ATGTCTCACCTGCCGATGAAACTCCTGCGCAAGAAGATCGAGAAGCGGAATCAGAAATTGCGGCAAC---------------------GAAACC------TGAAGCTACAGG +s monDom1.scaffold_15141 668904 91 - 2865334 ATGTCGCACTTACCGATGAAGTTGCTGCGCAAGAAGATCGAGAAGCGCAATGAGAAGCTGCGTCAGA---------------------GGAACCAGCGGTTGAAGATGAAAG +s galGal2.chr7 7730657 78 - 37338262 -------ACCTGCCCATGCGGCTGCTCCGCAAGAAGATCCACAAGAGGAACCTGAAGCTGCGGCAGC---------------------GCAACC------TGAAGCTGCGGG +s tetNig1.chr2 18793916 84 + 19247847 ATGGCGGACTTGCAGATGAAGCTTCTTCGGAAGAAAATCCAGAAACGAAATGAAAATAGGAAAAAGC---------------------GCAAGT------TG-CTCAGTAAA +s fr1.chrUn 153487626 84 + 349519338 ATGGCGGACCTGCAGATGAAGCTTCTTCGGAAGAAAATTCAGAAAAGAAATGAAAATAAGAAAAAGC---------------------GCAAGT------TG-CCCAGTAAA +s danRer2.chr11 36964133 82 + 37613378 ATGGCGGACATGCAGATGAAGATTCTTCGCAAGAAAATTCAAAAGATAAGCGAAAAAAATAAACAAC---------------------GCAAAC------TG-CT--GCAAT + +a score=692917.0 +s hg17.chr2 124624027 54 - 243018229 GAGGGCCGCAAGAACGAGATGCTGCTGTCCAAGGTGAAAGCGAAGG---CCTCCTGA +s panTro1.chr13 129893165 54 - 134309081 GAGGGCCGCAAGAATGAGATGCTGCTGTCCAAGGTGAAAGCGAAGG---CCTCCTGA +s baboon.ENr121_1 244064 54 - 685430 GAGGGCCGCAAGAATGAGATGCTGCTGTCCAAGGTGAAAGCGAAGG---CCTCCTGA +s rheMac1.SCAFFOLD106162 12703 54 - 29563 GAGGGCCGCAAGAATGAGATGCTGCTGTCCAAGGTGAAAGCGAAGG---CCTCCTGA +s marmoset.ENr121_1 273698 54 - 725777 GAGGGCCGCAAGAATGAGATGCTGCTGTCCAAGGTGAAAGCCAAGG---CCTCCTGA +s galago.ENr121_1 222533 54 - 644928 GAGGGCCGTAAGAACGAGGTCCTGTTGTCCAAGATGAAAGCCAAGG---CCTCCTGA +s rn3.chr13 33537059 54 + 111348958 GAGGGCCGAAAGAATGAGCTATTACTGTCTAAGATCAAAGCCAAGG---CCTCCTGA +s mm6.chr1 121264397 54 + 195109612 GAGGGCCGAAAGAATGAGCTATTACTATCTAAGATCAAAGCCAAGG---CCTCCTGA +s rabbit.ENr121_1 166427 54 - 468456 GAGGGCCGAAAGAATGAGGTGTTGCTGTCCAAGGTGAAAGGCAAGG---CCTCCTGA +s canFam1.chr19 35014939 54 + 56914383 GAGGGCCGCAAGAATGAGGTGCTGCTGTCCAAGGTGAAAGCCAAGG---CCTCCTGA +s rfbat.ENr121_1 205277 54 - 531148 GAGGGCCGCAAGAACGAGGTGCTGCTGTCCAAGGTGAAAGCCAAGG---CCTCCTGA +s shrew.ENr121_2 92412 54 + 117850 GAGGGCCGCAAGAACGAGGTCCTGCTCGCCAAGGTGAAAGCCATGG---CCTCCTGA +s armadillo.ENr121_1 134595 51 - 538776 GAGGGCCGCAAGAATGAGGTGCTGTTGTCCAAGGTGAAAGCCAAAG---CCT---GA +s elephant.ENr121_1 230537 54 - 500612 GAGGGCCGCAAGAACGAGGTGCTGCTGTCCAAGGTCAAAGCCAAGG---CTTCCTGA +s tenrec.ENr121_27 6328 54 + 6946 GAGGGTCGCAGGAACGAGCTGCTGCTGTCCAGGATGGGAGCCAAGA---CTTCCTGA +s monDom1.scaffold_15141 2100651 54 + 2865334 GAATGCCGCAAGAATGAAATCCTGCTGTCCAAGGTGAAATCCCATG---TTTCCTGA +s galGal2.chr7 29585249 54 + 37338262 GAATGTCGTAAGAACGAAATGCTGCTGTCCAAGCTGAAAGCTAGTT---CTTCCTGA +s fr1.chrUn 30172281 57 - 349519338 GAATGTCGGAAAAACGAGATGCTGCTGTCCAAGCTGAGAGCTAAAGGAGCGTCGTAG +s danRer2.chr11 611238 57 - 37613378 GAGTGCCGTAAGAATGAGATGCTGTTGTCTAAACTGAGGGCTAAAGGAGCTTCATAA + +a score=218849.0 +s hg17.chr2 220190202 26 + 243018229 ATGCTCAAAGCGGTGATCCTGATT---------GG +s panTro1.chr13 110354917 26 + 134309081 ATGCTCAAAGCGGTGATCCTGATT---------GG +s baboon.ENr331_1 231517 26 + 760113 ATGCTCAAAGCGGTGATCCTGATT---------GG +s rheMac1.SCAFFOLD5684 22101 26 - 31497 ATGCTCAAAGCGGTGATCCTGATT---------GG +s marmoset.ENr331_1 239524 26 + 701030 ATGCTCAAAGCGGTGATCCTGATT---------GG +s galago.ENr331_1 97776 26 + 573868 ATGCTCAAAGCTGTGATCCTGATT---------GG +s rn3.chr9 74861356 26 + 113649943 ATGCTCAAAGCTGTGATCCTCATT---------GG +s mm6.chr1 75727522 26 + 195109612 ATGCTCAAAGCTGTGATTCTCATT---------GG +s rabbit.ENr331_1 89387 26 + 462957 ATGCTCAAGGCCGTGATCCTGATT---------GG +s cow.ENr331_1 240811 26 + 534390 ATGCTCAAAGCTGTGATCCTGATT---------GG +s canFam1.chr37 28991402 26 + 33897405 ATGCTCAAAGCTGTGATCCTGATT---------GG +s armadillo.ENr331_1 83891 26 + 582518 ATGCTCAAAGCTGTGATCCTGATT---------GG +s monDom1.scaffold_13176 1153603 35 + 2254034 CTGCCCCCTCCCTCAATCCCCCTTCCCCCTCAGTG +s xenTro1.scaffold_31 647117 26 - 3348553 ATGCTGAAAGCCGTCATCCTGATT---------GG +s tetNig1.chr2 4669484 26 - 19247847 ATGTTAAAGGCAGTAATTTTAATC---------GG +s danRer2.chr9 6164853 26 + 44268068 ATGCTGAAGGCTGTCATTCTTATC---------GG + +a score=140861.0 +s hg17.chr2 220190228 14 + 243018229 AGGCCCTCAAA--AGG +s panTro1.chr13 110354943 14 + 134309081 AGGCCCTCAAA--AGG +s baboon.ENr331_1 231543 14 + 760113 AGGCCCTCAAA--AGG +s rheMac1.SCAFFOLD5684 22127 14 - 31497 AGGCCCTCAAA--AGG +s marmoset.ENr331_1 239550 14 + 701030 AGGCCCTCAAA--AGG +s galago.ENr331_1 97802 14 + 573868 AGGCCCTCAGA--AGG +s rn3.chr9 74861382 14 + 113649943 AGGACCCCAGA--AGG +s mm6.chr1 75727548 14 + 195109612 AGGCCCCCAGA--AGG +s rabbit.ENr331_1 89413 14 + 462957 AGGCCCTCAAA--AGG +s cow.ENr331_1 240837 14 + 534390 AGGCCCTCAAA--AGG +s canFam1.chr37 28991428 14 + 33897405 AGGCCCTCAAA--AGG +s armadillo.ENr331_1 83917 14 + 582518 AGGCCCCCAAA--AGG +s monDom1.scaffold_13176 1153638 16 + 2254034 ATACACTCATGCTAAG +s galGal2.chr7 14389393 14 - 37338262 AGGCACTGAAA--AGG +s xenTro1.scaffold_31 647143 14 - 3348553 TGGCCCCCAGA--AGG +s tetNig1.chr2 4669510 14 - 19247847 AGGCCCACAGA--AGG +s danRer2.chr9 6164879 14 + 44268068 AGGCCCCCAAA--AAG + +a score=6113830.0 +s hg17.chr2 22787833 787 - 243018229 AGCTGCGGCTGAGCGTGACCTGGCCCCTGGCTTCTTGGAGGCCTTTGCCACTGCAGCACTGGAGCCTGGTGATGCTGCGGCAGCCCTGACCCTGCTGCTACTGTATGAGCCGCGCCAGGCCCAGCGCGTGGCCCATGCAGATGTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTGGAGCGGCGTTTCCCCGGTGCCCGGGTGCCATGGCTCAGTGTGCAGACAGCCGCACCCTCACCACTGCGCCTCATGGATCTACTCTCCAAGAAGCACCCGCTGGACACACTGTTCCTGCTGGCCGGGCCAGACACGGTGCTCACGCCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCCGGCTGGCAGGCCTTCTTTCCCATGCATTTCCAAGCCTTCCACCCAGCTGTGGCC---------CCACCACAAGGG----CCTGGGCCCCCAGAGCTGGGCC------GTGACACTGGCCGCTTTGATCGCCAGGCAGCCAGCGAGGCCTGCTTCTACAACTCCGACTATGTGGCAGCCCGTGGGCGC-CTGGCGGCAGCCTCAGAACAAGAAGAGGAG---CTGCTGGAGAGCCTGGATGTGTACGAGCTGTTCCTCCACTTCTCCAGTCTGCATGTGCTGCGGGCGGTGGAGCCGGCGCTGCTGCAGCGCTACCGGGCCCAGACGTGCAGCGCGAGGCTCAGTGAGGACCTGTACCACCGCTGCCTCCAGAGCGTGCTTGAGGGCCTCGGCTCCCGAACCCAGCTGGCCATGCTACTCTTTGAACAGGAGCAGGGCAACAGCACCTGA +s panTro1.chr13 23913590 787 - 134309081 AGCTGCGGCTGAGCGTGACCTGGCCCCTGGCTTCTTGGAGGCCTTTGCCACTGCAGCACTGGAGCCTGGTGATGCTGCGGCAGCCCTGACCCTGCTGCTACTGTATGAGCCGCGCCAGGCCCAGCGCGCGGCCCACGCAGATGTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTGGAGCGGCGTTTCCCCGGTGCCCGGGTGCCATGGCTCAGTGTGCAGACAGCCGCACCCTCACCACTGCGCCTCATGGATCTACTCTCCAAGAAGCACCCGCTGGACACACTGTTCCTGCTGGCCGGGCCAGACACGGTGCTCACGCCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCCGGCTGGCAGGCCTTCTTTCCCATGCATTTCCAAGCCTTCCACCCAGCTGTGGCC---------CCACCACAAGGG----CCTGGGCCCCCAGAGCTGGGCC------GTGACACTGGCCGCTTTGATCGCCAGGCAGCCAGCGAGGCCTGCTTCTACAACTCCGACTACGTGGCAGCCCGTGGGCGC-CTGGCGGCAGCCTCAGAACAAGAAGAGGAG---CTGCTGGAGAGCCTGGATGTGTACGAGCTGTTCCTCCACTTCTCCAGTCTGCATGTGCTGCGGGCGGTGGAGCCGGCGCTGCTGCAGCGCTACCGGGCCCAGACGTGCAGCGCGAGGCTCAGTGAGGACCTGTACCACCGCTGCCGCCAGAGCGTGCTTGAGGGCCTCGGCTCCCGAACCCAGCTGGCCATGCTACTCTTTGAACAGGAGCAGGGCAACAGCACCTGA +s baboon.ENr331_1 488314 787 - 760113 AGCTGCGGCTGAGCGTGACCTGGCCCCTGGCTTCCTGGAGGCCTTTGCCACTGCAGCACTGGAGCCTGGTGATGCTGCGGCAGCCCTGACCCTGCTGCTACTGTATGAGCCACGCCAGGCCCAGCGCGCAGCCCACGCAGATGTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTGGAGCGGCGTTTCCCCGGCGCCCGGGTGCCATGGCTCAGTGTTCAGACAGCCGCACCCTCACCACTGCGCCTCATGGATCTACTCTCCAAGAAGCACCCACTGGACACACTGTTCCTGCTGGCCGGGCCAGACACGGTGCTCACGCCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCCGGCTGGCAGGCCTTCTTTCCCATGCACTTCCAAGCCTTCCACCCAGCTGTGGCC---------CCACCACAAGGG----CCTGGGCCCCCAGAGCTGGGCC------GTGACACTGGCCGCTTTGATCGCCAGGCAGCCAGCGAGGCCTGCTTCTACAACTCCGACTACGTGGCAGCCCGTGGTCGC-CTGGCGGCAGCCTCAGAACAAGAAGAGGAG---CTGCTGGAGAGCCTGGACGTGTACGAGCTGTTCCTCCACTTCTCCAGTCTGCATGTGCTGCGGGCAGTGGAGCCGGCGCTGCTGCAGCGCTACCGGGCCCAGACATGCAGCGCGAGGCTCAGTGAGGACCTATACCACCGCTGCCGCCAGAGTGTGCTTGAGGGCCTCGGATCCCGAACCCAGCTGGCCATGCTACTCTTTGAGCAGGAGCAGGGCAACAGCACCTGA +s rheMac1.SCAFFOLD120758 11603 787 + 41722 AGCTGCGGCTGAGCGTGACCTGGCCCCTGGCTTCCTGGAGGCCTTTGCCACTGCAGCACTGGAGCCTGGTGATGCTGCGGCAGCCCTGACCCTGCTGCTACTGTATGAGCCGCGCCAGGCCCAGCGCGCAGCGCACGCAGATGTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTGGAGCGGCGTTTCCCCGGCGCCCGGGTGCCATGGCTCAGTGTTCAGACAGCCGCACCCTCACCACTGCGCCTCATGGATCTACTCTCCAAGAAGCACCCACTGGACACACTGTTCCTGCTGGCCGGGCCAGACACGGTGCTCACGCCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCCGGCTGGCAGGCCTTCTTTCCCATGCACTTCCAAGCCTTCCACCCAGCTGTGGCC---------CCACCACAAGGG----CCTGGGCCCCCAGAGCTGGGCC------GTGACACTGGCCGCTTTGATCGCCAGGCAGCCAGCGAGGCCTGCTTCTACAACTCCGACTACGTGGCAGCCCGTGGTCGC-CTGGCGGCAGCCTCAGAACAAGAAGAGGAG---CTGCTGGAGAGCCTGGACGTGTACGAGCTGTTCCTCCACTTCTCCAGTCTGCATGTGCTGCGGGCAGTGGAGCCGGCGCTGCTGCAGCGCTACCGGGCCCAGACATGCAGCGCGAGGCTCAGTGAGGACCTATACCACCGCTGCCGCCAGAGTGTGCTTGAGGGCCTCGGATCCCGAACCCAGCTGGCCATGCTACTCTTTGAGCAGGAGCAGGGCAACAGCACCTGA +s galago.ENr331_1 439435 787 - 573868 GGCTGCAGCTGAGCGTGACCTGGCCCCTGGCTTCCTGGAGGCCTTTGCCACTGCAGCATTAGAGCCTGGTGATGCTGCAGCAGCCCTGACCCTGTTGCTACTGTATGAGCCACGCCAGGCCCAGCGGGCAGCCCATGCAGATGTCTTTGCACCTGTCAAGGCCCACGTGGCAGAGCTGGAACGGCGTTTCCCCGGTGCCCGGGTGCCATGGCTCAGTGTGCAGACATCTGTACCCTCACCACTGCGCCTCATGGATCTGCTCTCCAAGAAGCACCCACTGGACACCTTGTTCCTGCTGGCCGGGCCAGACACGGTGCTCACACCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCTGGTTGGCAGGCCTTCTTCCCCATGCACTTCCAAGCCTTCCACCCAGCTGTGGCC---------CCACCACAAGGC----CCTGGGCCACCAGAGCTGGGCC------GCGACACAGGCCGCTTTGATCGCCAGGTGGCCAGCGAGGCCTGCTTCTACAACTCTGACTACGTGGCAGCCCGTGGGCGA-CTGGCAGCGGCCTTAGAGCAGGAGGAGGAG---CTGCTGGAGAGCCTGGATGTATACGAGCTGTTCCTGCGTTTCTCGGGACTGCATGTGCTGCGGGCAGTGGAGCCAGCACTACTACAGCGCTACCGGGCCCAGACATGCAGTGCCCGGCTCAGTGAAGATCTGTACCACCGCTGCCGCCAGAGCATGCTTGAAGGCCTTGGCTCCCGAACCCAGCTGGCCATGCTGCTCTTTGAGCAGGAGCAGGGCAACAGCACCTGA +s rn3.chr9 38751749 784 - 113649943 GGCTGCAGCAGAGTGTGACCTGGCATCTGGCTTCCTAGAAGCCTTTGCCACTGCAGCACTGGAACCTGGCGATGCCGC---AGCCTTGACCCTGCTGCTGCTGTATGAGCCACGCCAGGCCCAGCGGGCAGCCCACGCAGATGTCTTCGCACCCGTCAAAGCCCACGTGGCCGAGCTAGAGCGGCGTTTCCCTGGTGCCCGAGTGCCCTGGCTCAGTGTACAGACATCCGCGCCCTCTCCGCTGCGCCTCATGGATCTACTCTCCAAGAAGCACCCGCTGGACACTCTGTTCCTGCTGGCCGGGCCAGACACAGTGCTCACACCCGACTTCCTGAACCGCTGCCGCATGCACGCCATCTCGGGCTGGCAAGCCTTCTTTCCCATGCACTTCCAGGCCTTCCACCCTGCTGTGGCT---------CCACCTCAGGGC----CCTGGGCCACCAGAACTGGGCC------GTGACACCGGCCACTTTGATCGTCAGGCTGCCAGCGAGGCATGCTTCTACAACTCCGACTATGTGGCGGCCCGTGGACGG-CTGGTGGCAGTCTCCGAGCAGGAGGAGGAG---CTGCTGGAGAGCCTGGATGTGTATGAGTTGTTTCTACGCTTCTCTAGCTTGCATGTGCTGAGGGCAGTGGAACCAGCCTTGCTGCAGCGCTACCGGGCCCAGCCATGCAGCGCTCGGCTCAGCGAGGACCTTTATCACCGCTGTCGCCAGAGCGTGCTTGAGGGCCTTGGCTCCCGCACCCAGCTTGCCATGCTGCTCTTTGAACAGGAACAGGGTAACAGCACCTAA +s mm6.chr1 119343135 784 - 195109612 GGCTGCAGCGGAACGAGACCTGGCTTCTGGCTTCTTAGAAGCCTTTGCCACTGCAGCCCTGGAACCTGGTGATGCAGC---AGCCTTGACCCTGCTGCTGCTGTATGAGCCACGCCAGGCCCAGCGGGCAGCCCACTCAGACGTCTTCGCACCTGTCAAGGCCCACGTGGCAGAGCTAGAGCGGCGTTTCCCTGGTGCCCGGGTGCCCTGGCTCAGTGTGCAGACAGCAGCGCCCTCTCCACTGCGTCTCATGGATCTGCTGTCCAAGAAGCACCCACTAGACACTCTGTTCCTGCTGGCCGGGCCAGACACGGTACTCACACCTGATTTCCTGAACCGCTGCCGCATGCATGCCATCTCTGGCTGGCAGGCCTTCTTCCCCATGCACTTCCAGGCCTTCCACCCTGCTGTGGCT---------CCACCTCAGGGC----CCTGGGCCACCAGAGCTGGGCC------GTGACACCGGTCACTTTGATCGCCAGGCTGCCAGTGAGGCATGCTTCTACAACTCCGACTATGTGGCGGCCCGTGGCCGG-CTGGTGGCGGCCTCGGAGCAGGAGGAGGAG---CTGCTGGAGAGCCTGGATGTGTACGAGTTGTTTCTGCGCTTCTCCAACTTGCACGTGCTGAGAGCAGTAGAGCCAGCCTTGCTGCAGCGCTACCGGGCCCAGCCGTGCAGTGCACGGCTCAGTGAAGACCTTTACCACCGCTGTCGCCAGAGCGTACTTGAGGGCCTTGGCTCCCGCACCCAGCTTGCCATGCTGCTCTTTGAGCAGGAACAGGGGAACAGCACCTAA +s rabbit.ENr331_1 342005 787 - 462957 GGCCGCGGCGGAGCGTGACCTGGCCGCCGGCTTCCTGGAGGCCTTCGCCACGGCGGCCCTGGAGCCCGGGGACGCCGC---AGCCCTGACCCTGCTGCTGCTGTACGAGCCCCGCCAGGCTCAGCGTGCCGCGCACTCGGACGTCTTCGCACCCGTCAAGGCCCAGGTGGCTGAGCTGGAGCGGCGATTCCCCGGCGCGCGGGTGCCCTGGCTCAGCGTGCAGACGGCCGTGCCTGCCCCCCTGCGCCTCATGGATCTCCTCTCCAAGAAGCACCCGCTGGACACACTGTTCCTGCTGGCCGGGCCGGACACGGTGCTCACCCCCGACTTCCTGAACCGCTGTCGCATGCACGCCATCTCTGGCTGGCAGGCCTTCTTCCCCATGCACTTCCAGGCCTTCCACCCGGCCGTAGCC---------CCGCCTCAGGGG----CCGGGGCCGCCCGAGCTGGGCC------GGGACACAGGTCACTTCGACCGCCAAGCGGCCAGCGAGGCCTGCTTCTACAACTCTGACTACGTGGCGGCCCGTGGGCGG-CTGGCAGCCGCCGCGGAGCAGGAGGAGGAGGAGCTACTGGAGAGCCTGGACGTGTACGAGCTGTTCCTGCGCTACTCCAGCCTGCACGTGCTGCGGGCCGTGGAGCCGGCACTGCTGCAGCACTACCGCGCCCAGACGTGCAGCGCGCGGCTCAGCGAGGACCTGTACCACCGCTGCCGCCAGAGCGTGCTGGAGGGCCTGGGCTCGCGCACCCAGCTGGCCATGCTACTCTTCGAACAAGAGCAGGGCCACAGCACCTGA +s cow.ENr331_1 437563 787 - 534390 AGCCGCAGCCGAGCGTGACCTGGCCCCTGCCTTCCTGGAGGCCTTCGCCACGGCGGCGCTGGAGCCTGGCGATGCTGCCGCAGCCCTGACCCTACTGCTACTGTATGAGCCCCGACAGGCCCAGCGGGCGGCCCACGCCGATGTCTTTGCCCCCGTCAAGGCCCATGTGGCAGAGCTGGAGCGGCGTTTCCCCGGTGCCCGGGTGCCCTGGCTCAGCGTGCAGACAGCCGCACCCTCACCACTGCGCCTCATGGATCTCCTCTCCAAGAAGCACCCGCTGGACACGCTGTTCCTGCTGGCCGGGCCAGACACGGTGCTCACGCCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCTGGCTGGCAGGCCTTCTTTCCCATGCACTTCCAGGCCTTCCACCCGGCCGTGGCC---------CCACCCCAGGGC----CCGGGACCCCCCGAACTGGGCC------GCGACACAGGCCGTTTCGATCGCCAGGCGGCCACCGAGACCTGCTTCTACAACTCTGACTACGTGGCGGCCCGAGCACGG-CTGGCAGCGTCCTCGGACCAGGAGGAGGAG---CTGATGGAGAGCCTGGATGTGTACGAGCTGTTCCTGCGTTTCTCCAGCCTGCATGTGCTGCGGGCGGTGGAGCCGGCGTTGCTGCAGCGCTATCGGGCACAGACGTGCAGTGCGCGGCTCAGCGAAGACCTATACCACCGCTGCCGCCAGAGCGCGCTCGAGAGCCTCGGCTCCCGCACGCAGCTGGCCATGCTGCTCTTTGAGCAGGAGCAGGGCAACAGCACCTGA +s canFam1.chr37 4867817 787 - 33897405 GGCTGCGGCCGAGCGGGACCTGGCCCCTGGCTTCCTGGAGGCCTTCGCCACCGCGGCGCTGGAGCCGGGTGACGCGGCTGCAGCCCTGACCCTGCTGCTCCTGTACGAGCCACGACAGGCCCAGCGGGCGGCCCACGCAGATGTCTTTGCGCCTGTCAAGGCCCACGTGGCGGAACTCGAGCGGCGTTTCCCGGGTGCCCGGGTGCCCTGGCTCAGCGTGCAGACAGCTGCACCCTCGCCGCTGCGCCTCATGGACCTGCTCTCCAAGAAGCACCCGCTGGACACGCTGTTCCTGCTGGCCGGGCCCGACACGGTGCTCACGCCCGACTTCCTGAACCGCTGCCGCATGCACGCCATCTCTGGCTGGCAGGCCTTCTTCCCCATGCACTTCCAGGCCTTCCAcccggccgtggcg---------cccccccagggc----cccgggcccccggAGCTGGGCC------GAGACACGGGCCGCTTCGACCGCCAGGCGGCCAGCGAGGCCTGCTTCTACAACTCCGACTACGTGGCAGCCCGCGGACGG-CTGGCAGCGGCCTCGGAGCAGGAAGAGGAG---CTGCTGGAGAGCACGGACGTGTACGAGCTGTTCCTGCGCTTCTCGGGCCTACACGTGCTGCGCGCCGTGGAACCAGCGCTGCTGCAGCGCTACCGGGCGCAGGCGTGCAGCGCGCGGCTCAGCGAGGACCTGTACCACCGCTGCCGCCAGAGCGAGCTGGAGGGCCTGGGCTCCCGCACCCAGCTGGCCATGCTGCTCTTTGAGCAGGAGCAGGGCAACAGCACCTGA +s rfbat.ENr331_1 395725 787 - 579985 GGCTGCGACTGAGCGTGACCTGGCCCCTGGCTTCCTGGACGCCTTTGCCTCAGCAGCACTGGAGCCTGGTGATACTGCAGCAGCCCTGACCCTGCTGCTACTGTATGAGCCACGACAGGCCCAGCGGGCAGCCCATGCAGATGTCTTTGCACCTGTCAAGGCCCACGTGGCAGAGCTGGAGCAGCGTTTCCCTGGTGCCCGGGTGCCCTGGCTCAGTGTGCAGACAGCTGCCCCCTCACCACTGCGCCTCATGGATCTGCTCTCCAAGAAGCACCCGCTGGACACACTGTTCCTGCTGGCTGGGCCAGACACAGTGCTCACGCCGGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCTGGCTGGCAGGCCTTCTTTCCCATGCACTTCCAGGCTTTCCACCCAGCCGTGGCC---------CCACCACAGGGC----CCGGGGCCCCCGGAGCTGGGCC------GAGACACGGGCCACTTTGATCGCCAGGCAGCCAGTGAGGCCTGCTTCTACAACTCCGACTATGTGGCAGCCCGTGGGCGG-CTGGCTGCTGCCTTGGAGCAGGAGGAGGAG---CTCCTGGAGAGCATGGATGTGTATGAGCTGTTCCTGCGCTTCTCTGGCCTGCATGTGCTGCGGGCAGTGGAGCCAGCGCTGCTGCAGCGCTACCGGGCCCAGACATGCAGCGCGCGGCTCAGCGAGGACTTGTACCATCGCTGTCGCCAGAGCACGCTCGAGGGCCTGGGCTCCCGCACCCAGCTCGCCATGCTGCTCTTTGAGCAGGAGCAAGGCAACAGCACCTAA +s armadillo.ENr331_1 461362 787 - 582518 GGCCGCGGCCGAGTGTGACCTGGCCCCTGGCTTCCTGGAGGCCTTCGCGGCTGCAGCCCTGGAGCCTGGTGACACCGCAGCCGCCCTGACCCTGCTGCTACTGTATGAGCCTCGCCAGGCCCAGCGCGCAGCCCACGCTGACATTTTCGCACCCGTCAAAGCCCACGTGGCAGAGCTGGAGCGGCGTTTCCCTGGCGCCCGGGTGCCCTGGCTCAGTGTGCAGACGGCTGCACCCTCAACCCTGCGCCTCATGGACCTGCTCTCCAAGAAGCACCCCCTGGACACGCTGTTCCTGCTGGCCGGGCCGGACACAGTGCTCACGCCTGACTTCCTGAACCGCTGCCGCATGCATGCCATCTCCGGCTGGCAGGCCTTCTTTCCCATGCACTTCCAGGCCTTCCACCCGGCGGTGGCC---------CCCCCACAGGGC----CCCGGGCCACCGGAGCTGGGCC------GCGACACGGGCCGCTTCGACCGCCAGGCGGCCAGCGAGGCCTGCTTCTACAATTCCGACTACGTGGCGGCCCGCGGGCGA-CTGGCAGCGGCCTTGGAGCAGGAGGAGGAG---CTGCTGGAGAGCCTGGACGTGTATGAGCTGTTCCTGCGCTTCTCGGAGCTGCACGTGCTGCGGGCCGTGGAGCCCTCGCTGCTGCAGAGATACCGGGCCCCGATGTGCAGCGCGCAGCTCAGCGAGGACCTGTACCACCGCTGCCGCCAGAGCGCACTGGAGGGCCTCGGCTTGCGCACCCAGCTCGCCATGCTGCTCTTCGAGCAGGAGCAGGGCAATAGCACCTGA +s monDom1.scaffold_13176 1058656 787 - 2254034 GGCGGCCAGCGATCTCGATATGGCGCCCCGCTTCCTGGAGGCCTTTGCCGCTGCTGCTCTTGAGCCGGGGGACACTGCGGTGGCTCTGACCCTGCTGCTGCTCTACGAGCCCCGTCAAGCCCAGCATGTGACCCATGCTGACATCTTCGCTTCAGTGAAGAGCCGTGTGGCAGAGCTGGAGCGACGCTACCCTGGCTCCCAAGTCCCCTGGCTCAGCGTGCAGACAGCTGTCCCAACGCCCCTTCGTCTGCTGGACCTGCTCTCCAAGAAACACCCCCTGGACACGCTCTTCCTGCTGGCGGGGCCAGCCACGGTCCTCACTTCTGATTTCCTGAACCGATGTCGGATGCACGCCATCGCGGGATGGCAGGCTTTCTTCCCCATGCACTTCCAGGCCTACCATCCTGCCGTGGCG---------CCCCCACAGGCC----CCAGGGACCCCTGAGCTGGGCC------GGGATACGGGACACTTTGACCGCCACGTAGCCAGCGAAGCCTGCTTCTACAACTCGGACTACGTGGCAGCCCGAGGCCAG-CTGGCAAAAGCCTGGGAGCAGGAAGAGGAG---ATGCTGGAGGGCCTGGATCTATATGAATTCTTCCTGAAGTTCTCCAGCCTGCATGTGCTTCGAGCTGTGGAGCCGGCCCTGCGGCAGCCCTACCGACACCAGCCCTGCAGTGCCCAGCTCAGTGAGAGCCTGTATCACCACTGCCGCCAGAGCGTCTTCGAGGGTCTGGGCTCCCGCTCCCAGCTAGCCATGCTGCTCTTCGAGCAAGAGCAGGGAAACAGCACCTGA +s galGal2.chr7 22907113 790 + 37338262 CACTGCCCACGAACGGGACCATGCCGCACGCTTCCTGGAGGCCTATGCGGCAGCTGCCTTTGAGAGCAGCGAGAACGC---GGTGCTCACCTTCCTGTTCATCTACGATCCATTCGAGGCCCAGCAGGTGACCCAGAACGACATCTTTGCCCCTGTGAAGGCCCAGATCACAGAGTATGAGCGCAAGTATGCCGAGGTGAAGATCCCGTGGATCAGCGTGAAGACAGATGCCCCCTCCCAAATCAAGGTCATGGACATCATCTCCAAGAAGCATCCCGTGGACACGCTGTTCTTTGTGGCCGGTGTGGGCACAGAGGTCACCGTCGACTTCCTGAACCGCTGCCGGATGAACACCATCAACAACTGGCAGGTCTTCTTCCCCATCCACTTCCAGGGCTACAACCCCGCCGTCGCCTA-------CCACAACCAGGC----ACCG--CCTGCCACACTGGACCTCCTGCGGGATGCAGGGCGCTTTGACCGCGATGTCTTCCATGAGGCCTGCTTCTACAATGCTGACTACATGGCAGCACGCACCCGC-ATGGCGGGTGACGTGCAGGAGAATGAGGAC---ATCCTGGAGACCCTGGACATCTACGATATGTTCATCAAGTACTCCAACCTTCACGTCTTCCGGGCCGTGGAGCCCGCCCTGCTGCAGCACTACCGGCACCAGGCCTGCAACCCGCGGCTCAGTGAGGAGATCTACCACCGCTGCGTGCAGAGCAGCCTGGAGGGCGTTGGGTCCCGCTCCCAGTTGGCCATGGTGCTCTTTGAGCAGGAGCAGGGGAACAGCACCTGA +s xenTro1.scaffold_1262 138034 787 + 226782 GACGGCGCAGGATCGGGAACACGCCGCTCGGTTCCTCCAGGCCTTCACGG--ACATCCAAGGCAACGAGAACTCCCTC-------CTCACCTTGCTTTTTATCTACGACCCGTTCCAAGCCCAGCAGGTCAGCCAGAACGACATATTTGGCCAAGTCAAAAGTATCATCGCAGAATACGAGCGCAAATACCGTGACCTTAAAATCCCTTGGATCAGCGTGAAGACCGACGCTCCCTCCCAGATCCGTTTAATGGACATCATCTCCAAAAAGCACCCGGTAGACACGCTCTTCTTCCTCGCCGGCGTGGGCAGCCACTTGAACACCGAGTTCCTCAACCGCTGTCGTATGAACACCATCAACAACTGGCAGGTCTTCTTCCCCATCCACTTCCAAGGCTACAACCCCGAGGTGTCGGAGCACGGGCAGCAGCCGCAT----TCTGCCACGCTGGAGCTGTTGC------GGGACGCCGGGCGCTTCGACAGGGACGTGTTCGAGGAGTCCTGCTTCTACAATGCCGACTACATGTCCGCCCGCTCCAAA-ATGAGCGCCGACGCTCAAGAAAACGAAGAG---ATTCTGGAGATGTTGGACATTTACGAGATGTTCATCCGCTACTCCGGGCTCCACGTCTTCCGGGCCGTGGAACCGGCGCTGCTTCAGCAATACAGGTCGAGGGCCTGTAACCCGCGGCTCAGCGAGGAGATCTATCACCGGTGCGTGCAGAGCAATCTGGAGGGTCTGGGCTCTCGGTCTCAGCTTGCCATGCTGCTGTTTGAGCAAGAGCAGGGGAATAGCACTTGA +s tetNig1.chr2 14458621 791 + 19247847 CACCCTGCAGGAGCGCGGTTTCGCCAGCCGTTTCCTGGAAGTGTTTGCCTCCAAAGCTTTGGAGACCAGCGAAAACGC---TATCCTGACATTTCTGTTCATCTACGACCCCGTGGAGGCGCAGCAGGTTAACCAGAACGACATCTTCGCCGGCGTGAAGAGCCAGATCAGCGCGTACGAACACAAGCACCCCGCTGCCAAGATTCCCTGGATCAGCGTCAAGACGGAAACGCCGTCCCAGATTAAGTTCATGGACATCATCTCCAAGAAGCACCCCGTGGACACGCTCTTCTTCCTGGCTAACGCTAACACGGAAATCAACTCGGAGTTCCTCAACCGCTGCCGCATGAATTCCATCAACAACTGGCAGGTGTTCTTCCCAGTCCACTTCCAGGACTACAAGCCGGAAGTGGCCTA-------TCACAAGCAGCCGCCGCCCGTCGCCACCCACCTGGTCA------AGGAGGCGGGGCATTTCGACCGCCTGTCTTTCGGAGAGGCCTGTTTTTACAACTCGGACTACATGGCGACGCGCACGCGGAATGGTGGCAGACGTGCAGGAGAACGAGGAG---ATCCTGGAGACGCTGGACATCTACGACATGTTCGTGAAGTACTCGGACCTGCACGTGTTCAGGGCGGTGGAGCCGGCGCTGCACCAGAAGTACGCGTACCAGGTGTGCAACCCACGGCTGAGCGAGGACACCTACCACCGGTGCATCCAGAGCAACCTGGAGGGCCTGGGCTCCCGCTCGCAGCTCGCCATGCTGCTCTTTGAGCAGGAACAAGGGAACAGTACCTGA +s danRer2.chr9 37579402 790 - 44268068 TACTCTTCAAGATCGAGATTACGTTCATCAGTTTTTAGAAGTGTATGCCACAAATGCATTCGAAACCAGCGAGAATGC---GATCTTGACGTTCCTCTTCATCTACGATCCAATAGAGGCCCAACAAGTCAACCAGAATGACATCTTCTCCAGCATCAAAGCACAAATCAGTACGTACGAACATCGATATCCTGCAGTCAAAATCCCCTGGATTAGTGTTAAAAGCGAAAGTCCGTCTCAAATCAAATTCATGGACATCATCTCCAAGAAGCACCCGGTTGACACGTTGTTCTTCATTGCGACGGTAAAAACAAGCATCAGTTCAGAGTTCCTCAATCGCTGTCGGATGAACTCCATCAACAACTGGCAGGTGTTCTTTCCAATCCACTTCCAGTACTACAATCCTGACATCGCTTA-------TCACAACCAGCCTCTTCCCAGTGCGTTGGATTTGGTCA------AAGAGGCTGGTCTTTTCGATCGCAGCTCCTTCACCGAAGCTTGCTTCTACAACTCGGACTACATGGCGACCCGTACCCGG-ATGTCATCGGATGTGCTGGAGAATGAGGAG---ATCCTGGAGAACCTTGATATCTATGACATGTTCGTCAAATACTCTGGCCTCCATGTTTTCCGAGCAGTGGAGCCGGCCCTGCATCAGAAATACAGCTACCAAACGTGTAATCCTCGCCTTAGTGAAGAAATCTACCAGAGGTGTGTACAAAGCACCCTGGATAGCCTTGGATCACGCTCTCAGCTCGCCATGCTGCTGTTTGAACAGGAACAGGGCAACAGTACTTAA + +a score=4269263.0 +s hg17.chr2 22787360 473 - 243018229 TGGGAGATCCAGAATACCAGCCATCTGGCCGTTGATGGGGACCAGGCAGCTGCTTGGCCCGTGGGTATTCCAGCACCATCCCGCCCGGCCTCCCGCTTTGAGGTGCTGCGCTGGGACTACTTCACGGAGCAGCACGCTTTCTCCTGCGCCGATGGCTCACCCCGCTGCCCACTGCGTGGGGCTGACCGGGCTGATGTGGCCGATGTTCTGGGGACAGCTCTAGAGGAGCTGAACCGCCGCTACCACCCGGCCTTGCGGCTCCAGAAGCAGCAGCTGGTGAATGGCTACCGACGCTTTGATCCGGCCCGGGGTATGGAATACACGCTGGACTTGCAGCTGGAGGCACTGACCCCCCAGGGAGGCCGCCGGCCCCTCACTCGCCGAGTGCAGCTGCTCCGG-CCGCTGAGCCGCGTGGAGATCTTGCCTGTGCCCTATGTCACTGAGGCCTCACGTCTCACTGTGCTGCTGCCTCT +s panTro1.chr13 23913117 473 - 134309081 TGGGAGATCCAGAATACCAGCCGTCTGGCCGTTGATGGGGACCGGGCAGCTGCTTGGCCCGTGGGCATTCCAGCACCATCCCGCCCGGCCTCCCGCTTTGAGGTGCTGCGCTGGGACTACTTCACGGAGCAGCACGCTTTCTCTTGCGCCGATGGCTCACCCCGCTGCCCACTGCGTGGGGCTGACCGGGCTGATGTGGCCGATGTTCTGGGGACAGCTCTAGAGGAGCTCAACCGCCGCTACCACCCGGCCTTGCGGCTCCAGAAGCAGCAGCTGGTGAATGGCTACCGACGCTTTGATCCGGCCCGGGGTATGGAATACATGCTAGACTTGCAGCTGGAGGCACTGACCCCCCAGGGAGGCCGCCGGCCCCTCACTCGCCGAGTGCAGCTGCTCCGG-CCACTGAGCCGCGTGGAGATCTTGCCTGTGCCCTATGTCACTGAGGCCTCACGTCTCACTGTGCTGCTGCCTCT +s baboon.ENr331_1 487841 473 - 760113 TGGGAGATCCAGAATACCAGCCGTCTGGCCATTGATGGTGACCGGGCAGCTGCCTGGCCTGTGGGCATTCCAGCACCATCCCGCCCGGCCTCCCGCTTTGAGGTGCTGCGCTGGGACTATTTCACAGAGCAGCACGCTTTCTCCTGCGCCGATGGCTCACCCCGCTGCCCACTGCGTGGGGCTGATCGGGCTGATGTGGCTGATGTTCTGGGAACAGCTCTAGAGGAGCTCAACCGCCGCTACCACCCGGCCTTGCGGCTCCAGAAGCAGCAACTGGTGAATGGCTACCGACGCTTTGATCCAGCCCGGGGTATGGAATACACACTGGACTTACAACTGGAGGCACTGACCCCCCAGGGAGGCCGCCGGCCCCTCACTCGCCGAGTACAGCTGCTCCGG-CCACTGAGCCGCGTGGAGATCTTGCCTGTGCCCTATGTCACTGAGGCCTCACGTCTCACTGTGCTCCTGCCTCT +s rheMac1.SCAFFOLD120758 11130 473 + 41722 TGGGAGATCCAGAATACCAGCCGTCTGGCCGTTGATGGTGACCGGGCAGCTGCCTGGCCTGTGGGCATTCCAGCACCATCCCGCCCGGCCTCCCGCTTTGAGGTGCTGCGCTGGGACTATTTCACGGAGCAGCACGCTTTCTCCTGCGCCGATGGCTCACCCCGCTGCCCACTGCGTGGGGCTGATCGGGCTGATGTGGCTGATGTTCTGGGGACAGCTCTAGAGGAGCTCAACCGCCGCTACCACCCGGCCTTGCGGCTCCAGAAGCAGCAACTGGTGAATGGCTACCGACGCTTTGATCCAGCCCGGGGTATGGAATACACACTGGACTTGCAACTGGAGGCACTGACCCCCCAGGGAGGCCGCCGGCCCCTCACTCGCCGAGTACAGCTGCTCCGG-CCGCTGAGCCGGGTGGAGATCTTGCCTGTGCCCTATGTCACTGAGGCCTCACGTCTCACTGTGCTCCTGCCTCT +s galago.ENr331_1 438962 473 - 573868 TGGGAAATCCAGAACACCAGCCATCTGGCAGTTGATGGGGAGCGGGCAGCTGCCTGGCCTGTGGGCATCCCAGCACCATCCCGCCCAGCCTCTCGCTTTGAGGTGCTGCGCTGGGACTACTTCACGGAGCAGCATGCTTTCTCCTGCGCTGATGGCTCACCCCGCTGCCCATTGCGTGGGGCTGATCGGGCTGATGTGGCTGATGTCCTGGGAGCAGCCCTGGAGGAACTCAATCGCCGCTACCACCCGGCCCTGCGGCTCCAGAAGCAGCAGCTGGTTAATGGTTACCGCCGTTTTGATCCAGCCCGGGGTATGGAGTACATGCTGGACTTGCAGCTGGAGGCCCTGACCCCTCAGGGTGGCCGGTGGCCCCTCACTCACCGGGTGCAGCTGCTCCGG-CCTCTGAGCCGTGTGGAGATCTTACCTGTGCCCTATGTCACTGAGGCCTCCCGTCTCACTGTGCTGCTGCCTCT +s rn3.chr9 38751276 473 - 113649943 TGGGAGATCCAGAATACCAGCAGACTGGCTGCTGATGGGGAGAGGGCTTCTACCTGGCCAGTGGGCATTCCAGCGCCGTCTCGCCCTGCCTCGCGCTTTGAGGTTCTGCGCTGGGACTACTTCACGGAACAGCACACTTTCTCCTGTGCTGACGGCTCACCCCGCTGCCTGCTGCGTGGGGCCGACCAGGCCGATGTGGCTGATGTCCTAGGAACAGCCTTAGAGGAGCTCAACCGCCGTTACCAGCCAGCACTGCGGCTCCAGAAGCAACAGCTGGTGAATGGCTACCGGCGTTTTGATCCAGCCCGAGGTATGGAGTACACACTAGACTTGCAGCTGGAAGCGCTGACGCCCCAGGGTGGCCGCTGGCCCCTCACCCACAGGGTACAGCTCCTTCGG-CCCTTGAGCCGAGTGGAGATCTTGCCTGTGCCCTATGTCACCGAGGCTTCTCGGGTCACTGTGCTGCTGCCTCT +s mm6.chr1 119342662 473 - 195109612 TGGGAGATCCAGAATACCAGCCGACTGGCTGCTGATGGGGAGAGAGCCTCTGCCTGGCCAGTGGGCATCCCAGCACCGTCTCGCCCTGCCTCACGCTTTGAGGTTCTGCGCTGGGACTACTTCACAGAACAATACGCGTTCTCCTGCGCCGATGGCTCTCCCCGCTGCCCGTTGCGTGGGGCCGACCAGGCTGATGTGGCTGACGTCCTGGGGACAGCCTTAGAGGAGCTCAACCGCCGTTACCAGCCAGCGCTGCAGCTCCAGAAGCAACAGCTGGTGAACGGCTACCGGCGTTTTGATCCAGCCCGAGGCATGGAGTACACACTAGACCTGCAGCTGGAAGCGCTGACACCCCAGGGTGGCCGCTGGCCCCTCACCCGCAGGGTGCAGCTCCTTCGG-CCCTTGAGCCGAGTGGAGATCTTGCCTGTACCCTATGTCACCGAGGCTTCTCGGCTCACTGTGCTACTGCCGCT +s rabbit.ENr331_1 341532 473 - 462957 TGGGAGATCCAGAACACCAGCCGCCTGGCCGCTGACCGGGAGCGGGCCACCGCCTGGCCCGTGGGGATCCCGGCGCCCTCGCGGCCGGCGTCCCGCTTCGAGGTGCTGCGCTGGGACTACTTCACGGAGCAGCACGCCTTCTCCTGTGCCGACGGCTCGCCCCGCTGCCCGCTGCGTGGGGCCGATCGGGCGGATGTGGCCGACGTACTGGGAGCCGCCCTGGAGGAGCTCAATCGCCGCTACCACCCGGCCCTGCGGCTCCAGAAGCAGCAGCTGGTGAACGGCTACCGGCGCTTTGACCCGGCGCGGGGTATGGAGTACACGCTGGACTTGCAGCTGGAGGCGCTCACCCCGCAGGGCGGCCGCCGGCCCCTCACCCGCCGGGTGCAGCTGCTCCGG-CCCCTGAGCCGTGTGGAGATCTTGCCCGTGCCCTACGTCACCGAGGCCTCACGCCTCACCGTGCTGCTGCCTCT +s cow.ENr331_1 437090 473 - 534390 TGGGAGATCCAGAACACCAGCCGCCTGGCAGCGGATGGGGAGCGGGCAGCTGCCTGGCCAGTGGGCATTCCAGCACCGTCTCGCCCCGCCTCCCGCTTTGAGGTGCTGCGCTGGGACTATTTCACAGAGCAACATGCTTTCTCCTGCGCTGATGGCTCCCCACGCTGCCCGCTGCGTGGGGCTGACCGGGCTGATGTGGCGGACGTTCTGGGGGCAGCCCTAGAGGAGCTCAACCGCCGATACCACCCAGCCCTGCGGCTCCAGAAACAGCAACTGGTTAATGGCTACCGACGCTTCGATCCTGCCCGGGGGATGGAGTACACGCTGGACTTGCAGCTGGAGGCACTGACCCCCCAGGGGGGCCGCAGGCCCCTCACCCGCCGGGTGCAGCTGCTACGG-CCACTGAGTCGCGTGGAGATCTTGCCCGTGCCCTACGTCACCGAGGCCTCGCGTCTCACTGTGTTACTCCCACT +s canFam1.chr37 4867344 473 - 33897405 TGGGAGATCCAGAACACCAGCCACCTGGCAGCTGACGGCGAGCGGGCGGCCGCCTGGCCCGTGGGCATTCCCGCACCATCCCGCCCGGCCTCTCGCTTCGAGGTGCTGCGCTGGGACTATTTCACAGAGCAGCACGCCTTCTCCTGCGCCGACGGCTCGCCCCGCTGCCCGCTGCGAGGGGCCGACCGGGCCGACGTGGCCGACGTGCTGGGTGCCGCCCTGGAAGAGCTCAACCGCCGCTACCACCCGGCCCTGCGGCTCGAGAAGCAGCAGCTGGTCAACGGCTACCGGCGCTTCGATCCTGCCCGCGGCATGGAGTACACGCTGGACCTGCAGCTGGAGGTGCTGACCCCGCAGGGCGGCCGCCGGCCCCTCACCCGCCGGGTGCAGCTGCTGCGG-CCCCTGAGCCGCGTGGAGATCCTGCCTGTGCCCTACGTCACCGAGGCGTCGCGTCTCACCGTGTTGCTGCCTCT +s rfbat.ENr331_1 395252 473 - 579985 TGGGAGATCCAGAACACTAGCCGCCTGGCAGCTGATGGGGAGCGTGCAGCCTCCTGGCCCATAGGCATTCCAGCACCATCTCGTCCAGCTTCCCGCTTTGAGGTGCTACGTTGGGACTATTTCACTGAGCAGCATGCTTTCTCCTGTGCTGATGGCTCGCCCCGCTGCCCTCTGCGTGGGGCTGACCGGGCTGACGTGGCTGACATTCTGGGGGCAGCCTTGGAAGAGCTCAACCGCCGCTACCACCCAGCCCTGCGGCTCCAGAAGCAGCAGCTGGTTAATGGCTACCGACGCTTTGATCCTGCCCGGGGTATGGAGTACACACTGGACTTGCAGCTGGAGGCACTGACCCCCCAGGGCGGCCGCTGGCCCCTCACCCGCCGGGTGCAGCTGCTACGG-CCACTGAGCCGTGTGGAGATCTTGCCTGTGCCCTATGTCACCGAGGCCTCACGTCTCACCGTGTTACTTCCTCT +s shrew.ENr331_31 384 473 + 4063 TGGGAGATCCAGAACACCAGCCGTCTGGCCGCTGATGGGGATCGGGCAGCCGCCTGGCCCGTGGGCATCCCCGCCCCCTCGCGCCCCGCCTCCCGCTTCGAGGTGCTGCGCTGGGACTATTTCACGGAGCAGCACGCGTTCTCCTGCGCGGACGGCTCGCCCCGCTGCCCGCTCCGAGGGGCCGACCGCGCCGACGTGGCGGACGTCCTGGGGGCTGCTCTGGAAGAGCTCAACCGCCGCTACCACCCAGCTCTGCGGCTCCAGAAGCAGCAGCTGGTGAACGGCTACCGCCGCTTTGACCCGGCGCGAGGCATGGAGTACACGCTGGACTTGCAGCTGGAGGCGCTGACTCT-CAGGGCGGGCGGCAGCCGCTCACCCGCCGGGTGCAGCTGCTCCGGGCTGCTGAGCCGCGTGGAAATCTTGCCGGTACCATATGTCACCGAAGCGTCGCGTCTCACCGTGTTGCTGCCTCT +s armadillo.ENr331_1 460889 473 - 582518 TGGGAGATCCAGAACACCAGCAGCCTGGCAGCCGACGGGGACCAGGCAGCTGCGTGGCCTGTGGGCATTCCAGCCCCATCCCGCCCGGCTTCCCGCTTTGAGGTGCTGCGCTGGGACTACTTCACGGAGCAGCACGTGTTCTCCTGCGCCGATGGTTCACCCCGCTGTCCGCTGCGGGGAGCTGACCGGGCTGACGTGGCCGACATTCTGGGGACAGCGCTGGAGGAGCTCAACCGCCGCTACCATCCAGCCCTGCGGCTCCAGAAGCAGCGACTGGTTAACGGCTACCGCCGCTTCGATCCTGCCCGGGGCATGGAGTACACGCTGGACTTGCAGCTGGAGGCGCTGACCCCCGAGGGCGGCCGCCAGCCCCTCACCCGCCGGGTGCAGCTGCTACGG-CCGCTGAGTCGCGTGGAAATCCTGCCCGTGCCCTACGTCACCGAGGCCTCACGCCTCACGGTGCTGCTGCCACT +s monDom1.scaffold_13176 1058183 473 - 2254034 TGGGAGATCCAGAACACAAGCCGGCTCTCTGTGGACGGGGAACAGGAGGCATCCTGGCCGCTAGGCATCCCAGCCCCATTCCGTCCCTCTTCTCGATTCGAGGTGTTGAGCTGGGACTACTTCACGGAGCAGCACGTTTTCTCATGCGCGGATGGCTCCCCTCGTTGCCCCTTGCGGGGAGCCGACCGGGATGATGTAGCAGATGTCCTGGGGGCGGCCTTGGAAGAGCTGAATCGCCGCTACCACCCGGCTCTTCAGCTTCGCAAACAACAGCTGCTCAACGGCTACCGCCGCTTTGACCCAACGAGAGGCATGGAGTACACGCTGGACTTGGAGTTGGAGGCGCTGACCCCAGAGGGGGCCCGCCAGCACCTCACCCGTCGAGTGCAGCTCCTGAGG-CCCCTGAGCCGGGTGGAAATCCTGCCGGTGCCCTACGTTACTGAGGCGTCCCGCCTTACGGTGCTGCTGCCGCT +s galGal2.chr7 22906640 473 + 37338262 CTTGAGATCCAGAATGCCAGCAGCCTGTCTGCAGATGGGGACCACAGTGCCGCGTGGCCTGTCGGCATCCCTCCTCCATTCCAGCCCAAAACTCGCTTCGAGGTGCTGCGCTGGGACTACTTCACAGAGGATCAGGTCTATGCCTGCGTGGATGGCTCCCCCAAATGCGAGCTGCAGGGCGCAGACCTAGCTGATGTGGCTGACGTGGTGGCCACAGCCATGGAGGAGCTGAACCGCAAGTACCAGCCGGTGCTGCATGTCCGCAAGCAGCAGCTGGTGAATGGCTACCGGCGCTTTGACCCTACGCGCGGCATGGAGTACACGCTGGACCTGCAGGTGGAGGTGGTCACGCAGAAGGGTCACAGCCGCTCTGTCACCAAGCGCGTGCACCTGGTGCGG-CCCCTCAGCGAGGTGGAGATCATCCCTATGCCCTATGTGACGGAGGCCAGCCGCATCAACGTCATCTTGCCGCT +s xenTro1.scaffold_1262 137561 473 + 226782 AGGGAGATACAGAACACCAGCAGCCTGTCGGTAGAGGGGGAACATTCTGCTACCTGGCCCCTAGGGATCAATTCTCCCTTCCAGCCACGGACGCGGTTTGAAGTTCTACGCTGGGACTACTTCACCGAGGACCAAACCTTCTCCTGCACCGATGGCTCCCCAAAGTGCGAGCTGATTGGGGCAGACCTTGCCGATGTCACAGACGTCATAAGCACGGCAGTGGATGAGTTGAACCGCAAGTACCAGCCGGTGCTACACGTGCGCAAACAGCAGCTGCTGAACGGCTACCGGCGCTTTGACCCAACGCGGGGCATGGAGTACACCTTGGATCTGCAGCTGGAGTTGGTGACCCAGAGGGGACACAGTCGCTCTATCACCAAACGTGTGCACCTTGTGCGG-CCGCTCAGCGAGGTGGAGATCATCCCGATGCCGTATGTGACCGAAGCCAGCCGGATCAATATCATCCTCCCTCT +s tetNig1.chr2 14458148 473 + 19247847 GCAGAAATCATGAACGTGAGCGCCGACGCCTTCGAGGGCAGCTGGAGCTCCCAGTGGCCAGTGGGAGTGAACCCGCCTTTTCAGCCGCAGTCTCGATTCGAAGTCCTAAAATGGGAGTATTTTACAGAGGAGGAGATTTATTCCTGCGTGGACGGCTCTCCCAAGTGCGAGCTGAGGGGCATCGATCGTCTGGACGTGGCTAACGTGATCGACGCAGCGATGGGGGAGCTGAACAGGAAGTACAAGCCCGTCCTGCACCTCAAAAAGCAGCAGCTCATTAATGGTTACAGGCGCTTCGACCCCACGCGGGGCATGGAGTACACCCTGGACCTCCAGGTGGAGGCCGTCAACCAGAAAGGCCACAGCCGCTCCATCACCAAGCGGGTTCACCTGGTGCGA-CCGCTGAGCAAGACTGAGATCATTCCCATGCCCTACGTCACCGAGGCAACGCGGGTTCACGTCATTCTGCCGCT +s danRer2.chr9 37578929 473 - 44268068 GCGGAAATTAGAAATGTCAGTGTAGTGGCTTTTGAGGGCAACCGCAGTGCTTTGTGGCCAGTTGGAATCAATCCACCCTTTGAGCCCAAAACACGATTCGAGGTCCTGCGGTGGGATTACTTCACTGAGGATCAGGTTTACTCTTGCATCGATGGCTCTCCGAAATGCGAGCTTCGTGGAGTTGACAAGCTAGACGTAGCCGATGTCATTGAGACAGCAATGGGTGAACTGAATAAAAAGTACAAGCCTGTGTTGTACCTAAAGAAGCAACAGCTAATCAATGGATACAGACGTTTTGACCCCACCAGAGGTATGGAGTACACCCTGGACCTACAATTGGAGGTAGTTAACCAAAAAGGACACAGTCGCTCTATTACCAAGAGGGTCCACTTAGTAAGA-CCTCTCAGTCGCATCGAGATCATCCCTATGCCTTACGTTACAGAAGCAACTAGAGTTCATATCATCTTACCCGT + +a score=1338359.0 +s hg17.chr20 29105541 10 - 62435964 ---------CCTCACCTGA +s panTro1.chr21 30130007 10 - 65473740 ---------CCTCACCTGA +s baboon.ENr333_1 576800 10 - 736337 ---------CCTCACCTGA +s rheMac1.SCAFFOLD75573 25486 10 + 63072 ---------CCTCACCTGA +s marmoset.ENr333_1 640773 10 - 790936 ---------CCTCACCTGA +s galago.ENr333_1 503915 10 - 573009 ---------CCTCACCTGA +s mm6.chr2 26487264 10 - 181764313 ---------CCTCACATGA +s rabbit.ENr333_1 401904 10 - 443838 ---------CCTTACCTGA +s cow.ENr333_1 506404 10 - 562778 ---------CCTCACCTGA +s canFam1.chr24 23543357 10 - 50732077 ---------CCTCACCTGA +s rfbat.ENr333_1 334089 10 - 446645 ---------CCTTACCTGA +s shrew.ENr333_14 3779 10 + 19671 ---------CCTCACCTGA +s armadillo.ENr333_1 571206 10 - 702150 ---------CCTCACCTGA +s elephant.ENr333_1 504940 10 - 535973 ---------CCTTACCTAA +s platypus.ENr333_3 5031 19 - 23526 GCCGCTGTACCCGGACTGA + +a score=847132.0 +s hg17.chr20 33513606 95 + 62435964 ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGC +s panTro1.chr21 35533536 95 + 65473740 ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGC +s baboon.ENr333_1 340416 95 + 736337 ATGGAGACAAGAAACCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTGCTGGAAGAGCAGGTACTGGCACTACAGCAGCAGATGGC +s rheMac1.SCAFFOLD80437 46216 95 - 61260 ATGGAGACAAGAAACCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTGCTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGC +s marmoset.ENr333_1 341462 95 + 790936 ATGGAGACAAGAAGCTCTGGGTTGAATAACATGAAGCCCCCGTCACTGCGGCTGATGCTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGC +s galago.ENr333_1 263831 95 + 573009 ATGGAAGCAGGAAGCCCTGGGTTGAACAACATGAAGTCCCAGTCACTGCAGCTAGTGCTGGAGGAGCAAGTGCTAGCACTACAGCAGCAGATGGC +s mm6.chr2 155418909 92 + 181764313 ATGGAGACAGGGAGCCCCGGGTTG---AACATGAAGCCCCAGTCCTTGCAGCTGGTGCTGGAGGGGCAGGTGCTGGCGCTGCAGCAGCAGATGGC +s cow.ENr333_1 457166 95 + 562778 ATGGAGACAGGGGGCCCTGGGTTGAACAATATGAAGCCCCGGTCCCTGCAGCTGGTGCTGGAAGAGCAAGTGCTGGCACTGCAGCAGCAGATGGC +s canFam1.chr24 27350813 95 + 50732077 ATGGAGACGCGAGGCCCTGGGTTGAACAATATGAAGCCCCAGTCACTGCAGTTGGTGCTGGAGGAGCAAGTACTAGCACTACAGCAGCAGATGGC +s shrew.ENr333_5 1658 95 + 2244 ATGGAGCCGGGCAGCGCCGAGCACGGCACCATGAGGTCCCCGCCCCTGCAGCTGGTCCTGGAGGAGCAAGTGCTGGCCCTCCAGCAGCAAATGGC +s armadillo.ENr333_1 317729 95 + 702150 ATGGAGACAAGAGGTGCTGGGTTGAACACCATGAAGCCCCAGTCACTGCAGCTGGTGCTGGAAGGGCAAGTGCTAGCTCTACAGCAACAGATGGC +s monDom1.scaffold_15037 457774 92 - 4718213 ATGGAGGCAAGAGACCAAGGGC---ACAACATGAAGCCCCAGCCTCTGAATATGGTGCTGGAGAAGCAGATCCTGGCACTGCAGCAGCAAATGGC + +a score=583786.0 +s hg17.chr20 33513701 91 + 62435964 AGAGAAT--CAGGCAGCCTCCTGGCGGAAGCTGA----AGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCA---------GGCCAAG +s panTro1.chr21 35533631 91 + 65473740 AGAGAAT--CAGGCAGCCTCCTGGCGGAAGCTGA----AGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCA---------GGCCAAG +s baboon.ENr333_1 340511 91 + 736337 AGAGAAT--CAGGCAGCCTCCTGGCGGAAGCTGA----AGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCA---------GGCCAAG +s rheMac1.SCAFFOLD80437 46311 91 - 61260 GGAGAAT--CAGGCAGCCTCCTGGCGGAAGCTGA----AGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCA---------GGCCAAG +s marmoset.ENr333_1 341557 91 + 790936 TGAGAAT--CAGGCAGCCTCTTGGCGGAAGCTGA----AGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCA---------GGCCAAG +s galago.ENr333_1 263926 91 + 573009 AGAGAAT--CAGGCAGCCTCCTGGCGGAAGCTGA----AGAACTCCCAAGAGGCCCAGCAGAAGCAAGCAACCCTTGTGAGGAAGCTACA---------GGCCAAG +s mm6.chr2 155419001 91 + 181764313 CGAGAAT--CAGGCTGCCTCCTGGCGGAAACTGA----AGAACTCCCAAGAGGCCCAGAAGAGACAAGCAACCCTCGTGAGGAAGCTGCA---------GGCCAAG +s cow.ENr333_1 457261 91 + 562778 CGAGAAC--CAGGCAGCCTCATGGAGGAAGCTGA----AGAGCTCCCAGGAGGCCCAGCAGAGGCAAGCAGCTCTCGTGAGGAAGCTGCA---------GGCCAAG +s canFam1.chr24 27350908 91 + 50732077 AGAGAAC--CAAGCAGCCTCCTGGCGGAAGCTGA----AGAACTCCCAGGAGGCCCAGCAGAGGCAAGCAACCCTCGTGAGGAAGCTGCA---------GGCCAAG +s shrew.ENr333_5 1753 91 + 2244 CGAGAAC--CAGGCTGTGTCCTGGAGGAAGCTGA----AGAGCTCCCAGGAGGCGCAGCAAAGGCAGGCAAGCCTAGTGAGGAAGCTGCA---------GGCCAAG +s armadillo.ENr333_1 317824 91 + 702150 CGAGAAC--CAGGCAACCTCCTGGCGGAAGCTGA----AGAACTCCCAAGAGGCCCAGCAGAGGCAAGCAACCCTCGTGAGGAAGCTGCA---------GGCTAAG +s monDom1.scaffold_15037 457866 91 - 4718213 CGAGAAC--CAGGCTGCTTCCTGGCACAAGCTGA----AGATCTCCCAGGAGGCCCAACAGAGACAAGCAGTACTTGTGAGAAAGTTGCA---------AGCCAAG +s galGal2.chr20 12376081 96 - 13506680 AAAGAATGACAGGAGGCCTTGTGCAAGGAGTTCACCTGAAACATCACAGGAGG---AAAGAAGATGGACCA-------GTGGGAATTGCATCCCACAGGAGCCTAG + +a score=110145.0 +s hg17.chr20 28856437 27 - 62435964 ATT--TTGGAAGATGGTCTGGTTCCCTAG +s panTro1.chr21 29873839 27 - 65473740 ATT--TTGGAAGATGGTCTGGTTCCCTAG +s baboon.ENr333_1 324965 27 - 736337 ATT--TTGGAAGACGGTCTGGTTCCCTAG +s rheMac1.SCAFFOLD100460 7855 27 + 69370 ATT--TTGGAAGATGGTCTGGTTCCCTAG +s marmoset.ENr333_1 374702 27 - 790936 ATT--TTGGAAGATGGTCCAGTTCCCTAG +s galago.ENr333_1 319433 24 + 573009 ATT--TC---AGATGGTCCAGTACCCTGG +s rn3.chr3 24652290 26 - 170969371 ATT--TTGGAAGACG-TCTGATTCCCTAG +s mm6.chr2 26304889 27 - 181764313 ATT--TTGGAAGATGGTCTGATTCCCTAG +s rabbit.ENr333_1 155457 27 - 443838 ATT--TTGGAAGATGGTCTGGCTCCCTAG +s cow.ENr333_1 195343 27 - 562778 ATT--TCTGAAGGTGGTCCAGTTCCCTAG +s canFam1.chr24 23320253 27 - 50732077 ATT--TTGGAGGGTGGTCCAGTGCCCTCG +s shrew.ENr333_11 24243 26 - 31768 ATT--TT-GAAAAAGATTCATCCCTCCAG +s armadillo.ENr333_1 300111 24 - 702150 ATT--TC---AGTTATTTCAGTTCCCTGC +s tenrec.ENr333_25 6648 24 + 10962 ATT--TC---AGATAGTCCGGTTCCGTAA +s monDom1.scaffold_15037 4213878 24 + 4718213 ACCCATTGGAAGGT--TCCCACTC---AG +s galGal2.chr20 1064381 16 + 13506680 -----------GCTG--CCAGCTCCTCTC + +a score=1374686.0 +s hg17.chr20 33593260 88 + 62435964 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG +s panTro1.chr21 35611606 88 + 65473740 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG +s baboon.ENr333_1 425615 88 + 736337 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s rheMac1.SCAFFOLD100460 4061 88 - 69370 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGTGCCACGG +s marmoset.ENr333_1 454589 88 + 790936 ATGGAGGCGTTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGTGGGGGCGCCACGG +s galago.ENr333_1 345539 88 + 573009 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG +s rn3.chr3 146322266 88 + 170969371 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s mm6.chr2 155465078 88 + 181764313 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGTGCCACGG +s rabbit.ENr333_1 293571 88 + 443838 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTATCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s cow.ENr333_1 377662 88 + 562778 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTATCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s canFam1.chr24 27422888 88 + 50732077 ATGGAGGCGCTGGGGAAGCTCAAGCAGTTCGATGCCTACCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s shrew.ENr333_11 10613 88 + 31768 ATGGAGGCGCTGGGGAAGCTCAAGCAGTTCGATGCCTACCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACAG +s armadillo.ENr333_1 420266 88 + 702150 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTCTGGAAGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s elephant.ENr333_1 205306 88 + 535973 ATGGAGGCTCTGGGGAAACTGAAGCAGTTCGATGCCTACCCCAAGACTCTGGAAGACTTCCGGATCAAGACCTGCGGGGGCGCCACGG +s tenrec.ENr333_27 2450 88 - 7185 ATGGAGGCGCTGGGGAAATTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG +s monDom1.scaffold_15037 539882 88 - 4718213 ATGGAGGCGCTGGGGAAATTGAAGCAGTTCGATGCCTACCCAAAGACCCTGGAGGACTTCCGGGTCAAGACATGCGGCGGGGCCACAG +s tetNig1.chrUn_random 159954985 88 - 171761319 ATGGATACTTTTAGCAAACTGAAACAGTTTGACGCTTACCCGAAAACTCTCGAGGATTTTAGAGTGAAGACTTGGGGCGGAGCGACCG +s danRer2.chr20 12624529 88 - 59369745 ATGGATGCGTTAAATAAACTCAAACAATTTGACGCGTATCCGAAAACTCTAGAGGACTTCAGGATCAAAACATGTGGAGGAGCCACGG + +a score=1153346.0 +s hg17.chr21 32707032 79 + 46944323 ATGCTTCTGCCGGGAC----GCGCACGCCAACCGCCGACGCCCCAGCC--------------CGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGC +s panTro1.chr22 32678009 79 + 47338174 ATGCTTCTGCCGGGAC----CCGCACGCCAACCGCCGACGCCCCAGCC--------------CGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGC +s baboon.ENm005_1 38130 79 + 1530599 ATGCTCCTGCCGGGAC----CTGCACGCCAGCCGCCGGCGCCCCAGCC--------------CGCGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGC +s rheMac1.SCAFFOLD20175 129125 79 + 143704 ATGCTCCTGCCCGGAC----CTGCACGCCAGCCGCCGGCGCCCCAGCC--------------CGCGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGC +s marmoset.ENm005_1 156820 79 + 1506416 ATGCTTCTGCCGGGAc----ccgcgcgcccgccgccggcgccccAGCC--------------CGCTCAGCATCCCGGCCTCCGCAGGCAGGTAGAGC +s galago.ENm005_1 164352 79 + 1691059 ATGCTCCTGCCGGGAC----Acgcgcgcccgccgcccgcgccccagcc--------------cgcgcAGCATCCTGGCCTCCGTCGGCAGGTAGAGC +s rn3.chr11 30818860 79 + 87800381 ATGGTCTTGCCCGGAC----ACCCGCGTCTGCCGCCCGGGCCACAGCC--------------ACCGCAGAATCCCGGCCTCCGCAGGCAGGTAGAGC +s mm6.chr16 89988309 79 + 97408558 ATGCTCCTGCCAGGAC----ACCCGCGTCCACCACCCGCGCCCCAATC--------------GGCGCAGAATCAGGGCCTCCGCAGGCAGGTAGAGC +s rabbit.ENm005_90 447 79 + 1899 ATGCTCCTGCTGGGAC----Acgcgcgcccgccgcccgcgccccagcc--------------cgcccAGCATCCCGGCCTCCGCAGGCAGGTAGAGC +s cow.ENm005_1 153686 79 + 2199270 ATGCTGCTGCCGGGCC----ACGCGCGCCCACCGTCCGCCCCGCAACC--------------CGCGCAGCATCCCGGCCTCCGCAGGCAGGTAGAGC +s canFam1.chr31 30192155 79 + 41215879 ATGCTTCTGCCTGGAC----Acgcgcgcccgccgcccgcgccgcagcc--------------cgcgcAGCATCCCGGACTCCGCCGGCAGGTAGAGC +s rfbat.ENm005_1 170396 79 + 1483291 ATGCTCCTGCCCGGAC----CCGCGCGCCCGCCGCCCGCACCCCAGCC--------------CGCGCAGCATCCTGGCCTCCGCAGGCAGGTAGAGC +s armadillo.ENm005_1 58509 79 + 1490896 ATGCTCCAGCCGGGAC----CCGAgcgcccgccgcccgcgccccagcc--------------ggcgcAGCATCCCGGCCCCCGCCGGCAGGTAGAAC +s elephant.ENm005_1 82159 79 + 1396438 ATGCTCCCGCGGGGAC----GCGAGCGCCAGTCTCTCGCGCCCCAGCC--------------GGCTCAGCATCCTGGCCTCCGCAGGCAGGTAGAGC +s tenrec.ENm005_3 448 79 + 3605 ATGCTTCTGCGGGGAC----TCGAGCGCCGGTCTCCGGGGCCCCTGCC--------------CGCTCAGCATCCCAGCCTCCGCAGGCAGGTAGAGC +s monDom1.scaffold_13487 1286340 70 + 4289508 ATGTTTCAGCGGGATC----G---GTGGCAGCTCACGTCGCCCCAG--------------------CAGCATCCCAGCCTCCGGAGACAGGTAGATC +s galGal2.chr1 98706217 97 + 188239860 CGGCACCGGGCAGGGCTGCTCCGCCCCCCCGCTGCCCTCTCCCGCACCATGAGGGGAGGGGACGCGGGGCAGCACCCACGCCGGCGGCAGGTAGAGC +s xenTro1.scaffold_390 770127 60 + 1157250 ATGTGAGTGCCAGGTC-------CGCATC--------ATGACCCAGCG--------------AGATGGGCACCAAG------GGAGACAGGTGA--T + +a score=936869.0 +s hg17.chr21 32707111 81 + 46944323 CGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCT---CCAAAGAGATCTCAGCGCTCACCGACTTCTCTG +s panTro1.chr22 32678088 81 + 47338174 CGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCT---CCAAAGAGATCTCAGCGCTCACCGACTTCTCTG +s baboon.ENm005_1 38209 81 + 1530599 CGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTCGTCTGCT---CCAAAGAGATCTCAGCGCTCAGCGACTTCTCTG +s rheMac1.SCAFFOLD20175 129204 81 + 143704 CGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTCGTCTGCT---CCAAAGAGATCTCAGCGCTCAGCGACTTCTCTG +s marmoset.ENm005_1 156899 81 + 1506416 CGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTGCTGGTCTGCT---CCAAAGAGATCTCAGCGCTCACCGACTTCTCTG +s galago.ENm005_1 164431 81 + 1691059 AGCCGGGGCAGCTCCTCCGCCTCTTCTACTGCACTGTCCTGGTCTGCT---CCAAAGAGATCGCAGCGCTCTCGGACTTCTCCG +s rn3.chr11 30818939 81 + 87800381 CTCCAGGGCAGCTTCTGCGCCTCTTCTACTGCACGGTCCTAGTGTGCT---CCAAAGAGACCTCCGCGCTCACCGATTTTTCCG +s mm6.chr16 89988388 81 + 97408558 CTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCT---CCAAAGAGACCTCCGCGCTCACCGATTTCTCTG +s rabbit.ENm005_90 526 81 + 1899 CGCCGGGGCAGTTCCTGCGCCTCTTCTACTGCACCGTCCTGGTGTGCT---CCAAAGAGATCGCAGCGCTCACGGACTTCTCCG +s cow.ENm005_1 153765 81 + 2199270 CTCCGGGGCAGCTCCTGCGTCTGTTCTACTGCACCGTCCTGGTTTGCT---CCAGAGAGATCGCGGCGCTCACGGACTTCTCCG +s canFam1.chr31 30192234 81 + 41215879 CTCCCGGGCAGCTCCTGCGCCTCTTCTACTGCACCGTCCTGGTCTGTT---CCAAGGAGATCGCGGCGCTCACGGACTTCTCCG +s rfbat.ENm005_1 170475 81 + 1483291 CGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCT---CCAAAGAGATCGCAGCGCTCACGGACTTCTCCG +s hedgehog.ENm005_1 33512 78 + 709315 CCCCGGGGGGG---CTGCGCCTCTTCTACTGCGCGGTGCTGGTCTGCT---CCCGGGAGATCGCGGCGCTCACCGACTTCTCCG +s armadillo.ENm005_1 58588 81 + 1490896 CTCCCGCGCAGCTCCTGCGTCTCTTCTACTGCACTGTCCTGGTCTGTT---CCAAAGAGATCGCAGCGCTCACGGACTTCTCCG +s elephant.ENm005_1 82238 81 + 1396438 CGCCGGGGCAGTTCCTGCGCCTCTTCTACTGTACCGTCCTGGTCTGCT---CCAAAGAGATCGCGGCGCTCACGGACTTCTCTG +s tenrec.ENm005_3 527 81 + 3605 CTCCGGGGCAGCTCCTGCGCCTTTTCTACTGCACTGTCCTGGTCTGCT---CCAGAGAGATCGCCGCGCTCACGGACTTTTCTG +s monDom1.scaffold_13487 1286410 78 + 4289508 ---CTGTGCTACTATTTCGCCTCTTCTATTGTACCTTCTTGGTGTGCA---CCAAAGAGATCGCAGCCCTCACTGACTTCTCCG +s galGal2.chr1 98706314 78 + 188239860 ---GCGGGAGGCTGCTGCCTCTCCTCTCCTGCGCCATCCTCGCGTGCT---GCGCCGAGGTGGCGGCGCTCCGGGACTTCTCAG +s xenTro1.scaffold_390 770187 74 + 1157250 ---TGGCACAA-------GCCTTCTGTACTGCATCCTCCTCCTCCTCTGGGCTAAAGAGCTCTCTGCCCTGGCTGACTTCTCAG + +a score=378843.0 +s hg17.chr21 14074301 381 - 46944323 ATGGAGCGCCCTCTCATCTGGCACCTTCCTGGCCTCTTTCCCAGGCCCCAGTTCTGTCCATGCAGCTGTGGGTGCTTCCTGCATTGCGGGTCTCACGGGGAGGAGACGAGAGTGCCCCTGGTTGAGTCAGGAAAGAATTCTATCTTCACGTCGCTGCCAGCAAATGACCACAGCAGCTTCACGACCTCTGCAGGAACCTATCTTGGTAAAGAAACGGGGCCTATGTGgtggccgagcctcaggtgtggccgagcttcaggtgtggccCTTATGCACAGCACAGCCCAAGCCTGTGGGCACCACTCGCCCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCGAGGTCTGCGTGGCCCTTCAGGGCCGAATCTGA +s panTro1.chr22 14495269 381 - 47338174 ATGGAGCGCCCTCTCATCTGGCACCTGCCTGGCCTCTTTCCCAAGCCCCAGTTCTGTCCATGCAGCTGTGGGTGCTTCCTGCATTGCGGGTCTCACGGGGAGGAGCCAAGAGTGCCCCTGGTTGAGTCAGGAAAGAATTCTATCTTCACGTCGCTGCCAGCAAATGACCACAGCAGCTTCACGACCTCTGCAGGAACCTATCTCGGTAAAGAAACAGAGCCTATCTGgtggctgagcctcaggtgtggccgagcttcaggtgtggccCTTATGCACAGCACAGCCCAAGCCTGTGGGCACCACTCGCCCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCGAGGTCTGCGTAGCCCTTCAGGGCCGAATCTGA +s baboon.ENm005_1 1332018 381 - 1530599 ATGGAGTGCCCTCTCGTGTGGCACCTGCCTGGCCCCTTTCCCACGCCCCAGTTCTGTCCATGCAGCTGTGGGTGCTTCCTGCATTGGGGGTCCTGCCGGGAGGAGCCAAGAGTGCCCCTAGGGGAGTCAGGAAAGAATTCCCTCTTCACCTCGCTGCCAGAAAATGACCATAGCAGCTTCACAACCCCTGCAGGAACCTATCTCGGTAAAGAAATAGAGCCTATGTGgtggccgagcctcaggtgtggccaagcttcaggtgtggccCTTATGCACAGCACAGCCCAAGCCTGCGGATACCATTCGCTCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCAAGGCCTGTGTGGCCCTTCAGGGCTGAACCCGA +s rheMac1.SCAFFOLD20377 39438 294 - 119232 ATGGAGTGCCCTCTCGTGTGGCACCTGCCTGGCCCCTTTCCCAAGCCCCAGTTCTGTCCATGCAGCTGTGGGTGCTTCCTGCATTGGGGGTCCCGCCGGGAAGAGCCAAGAGTGCCCCTGGGGGAGTCAGGAAAGAATTCCCTCTTCACCTCGCTGCCAGAAAATGACCATAGCAGCTTCGCCACCCCTGCAGGAACCTATCTCGGTAAAGAAATGGAGCCTATGTGGTGGCCGAGCCTCAGGTGTGGCTAAGCTTCGGGTGTGACCCTTATGCACAGCACAGCC-------------------------------------------AC--------------------------------------------AACCCGA + +a score=776439.0 +s hg17.chr21 33321040 80 + 46944323 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCCCGGAGTAA +s panTro1.chr22 33286911 80 + 47338174 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCCCGGAGTAA +s baboon.ENm005_1 604977 80 + 1530599 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCCCGGAGTAA +s rheMac1.SCAFFOLD95266 35303 80 + 85465 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCAGCCCGGAGTAA +s marmoset.ENm005_1 665850 80 + 1506416 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCCCGGAGTAA +s galago.ENm005_1 699777 80 + 1691059 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCGGAACCCGATGACCTTTTTCTACCTGCTCGGAGCAA +s rn3.chr11 31244293 80 + 87800381 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCGTCGTCGCCAGAACCCGATGATCTTTTTCTGCCGGCCCGGAGCAA +s mm6.chr16 90383436 80 + 97408558 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCCGATGATCTTTTTCTGCCCGCCCGGAGCAA +s rabbit.ENm005_59 9006 80 + 43844 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCGGAACCCGATGACCTTTTCCTGCCGGCCCGGAGCAA +s cow.ENm005_1 1041619 80 + 2199270 ATGGACTCGGACGCCAGCCTGGTGTCTAGCCGGCCGTCGTCGCCGGAGCCCGATGACCTTTTCCTGCCGGCCCGGAGCAA +s canFam1.chr31 30690225 80 + 41215879 ATGGACTCGGACGCCAGCCTGGTGTCCAGTCGCCCGTCGTCACCAGAGCCCGATGACCTGTTTCTGCCGGCCCGGAGCAA +s rfbat.ENm005_1 573600 80 + 1483291 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTCCTGCCGGCCCGGAGCAA +s armadillo.ENm005_1 570431 80 + 1490896 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCCGAGCCCGATGACCTTTTCCTGCCGGCGCGGAGCAA +s elephant.ENm005_1 587237 80 + 1396438 ATGGACTCTGACGCCAGCTTGGTGTCTAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTCCTGCCGGCTCGGAGCAA +s monDom1.scaffold_13487 2075962 80 + 4289508 ATGGACTCCGATGCCAGTCTGGTGTCCAGCCGCCCGTCCTCACCGGAGACGGATGACATCTTCCTTACCACCCGGAGCAA +s xenTro1.scaffold_390 1097815 78 + 1157250 ATGGACTCAGACGCCAGCCTGGGCTCTAGCCGAGCCTCCTCCCCGGAGACAGATGACCTGTTCCTACACTCACGGAAA-- + +a score=1032384.0 +s hg17.chr21 33321120 153 + 46944323 GGGCAGCA---------GCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACCCCGAGTGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGCGCTATGGGCTCTGCGGGCGCGCATCCTGGGGACAAGCTA---GGA---------GGCAGTGGCTTCAAGTCATC +s panTro1.chr22 33286991 153 + 47338174 GGGCAGCA---------GCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACCCCGAGCGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGCGCTATGGGCTCTGCGGGCGCGCATCCTGGGGACAAGCTA---GGA---------GGCAGTGGCTTCAAGTCATC +s baboon.ENm005_1 605057 153 + 1530599 GGGCAGTA---------GCGGCAGCGCCTTCACTGGGGGCACAGTGTCCTCGTCCACCCCGAGCGACTGCCCGCCGGAGCTGAGCGCTGAGCTGCGCAGCGCTATGGGCTCTGCGGGCGCGCATCCTGGTGACAAGCTA---GGA---------GGCAGCGGCTTCAAGTCATC +s rheMac1.SCAFFOLD95266 35383 153 + 85465 GGGCAGTA---------GCGGCAGCGCCTTCACTGGGGGCACAGTGTCCTCGTCCACCCCGAGCGACTGCCCGCCGGAGCTGAGCGCTGAGCTGCGCAGCGCTATGGGCTCTGCGGGCGCGCATCCTGGTGACAAGCTA---GGA---------GGCAGCGGCTTCAAGTCATC +s marmoset.ENm005_1 665930 153 + 1506416 GGGCAGCA---------GCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACGCCGAGCGACTGCCCGCCGGAGCTGAGCGCTGAGCTGCGCGGCGCTATGGGCTCCGCAGGCGTGCATCCTGGGGACAAGCTA---GGA---------GGCAGTGGCTTCAAGTCATC +s galago.ENm005_1 699857 153 + 1691059 GAGCAGCA---------GCGGCGGCGGCTTTACCGGGGCCACAGTGTCCTCGTCCACGCCAAGCGACTGCCCGCCGGAGCTAAGCGCGGAGCTGCGCGGCGCCATGGGCTCAGCGGGAGCGCACTCTGGGGACAAGCTG---GGA---------AGCGGAGGCTTCAAGTCATC +s rn3.chr11 31244373 153 + 87800381 GGGGGGAA---------GCAGCAGCGGCTTCACAGGAGGAACCGTGTCCTCATCCACGCCGAGCGACTGCCCGCCAGAGCTGAGCTCCGAGCTGCGAGGAGCCATGGGCACGGCGGGCGCGCATCCCGGGGACAAACTG---GGC---------GGCGGTGGCTTCAAGTCATC +s mm6.chr16 90383516 153 + 97408558 GGGGGGAA---------GCAGCAGCGGCTTCACAGGAGGGACTGTGTCCTCGTCCACGCCGAGCGACTGCCCGCCAGAGCTGAGCTCCGAGCTACGAGGGGCCATGGGCGCGTCAGGCGCGCATCCCGGGGACAAACTG---GGC---------GGCGGTGGCTTCAAGTCATC +s rabbit.ENm005_59 9086 156 + 43844 GGGCAGCA---------GCGGCGGCGGCTTCACGGGGGGCACTGTGTCCTCGTCCACGCCGAGCGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGAGCCATGGGCGCGGCGGGTGCGCACCCCGGGGACAAGCTGGGCGGC---------GGCGGCGGCTTCAAGTCCTC +s cow.ENm005_1 1041699 162 + 2199270 GGGCAGCG---------GGGGCGGCGGCTTCACGGGAGGCACCGTGTCGTCGTCCACGCCGAGCGACTGCCCGCCGGATCTGAGCGCCGAGCTGCGCGGTGCCATGGGCGCGGCGGGCGCGCACCCGGGGGACAAGCTG---GGCGGCGGCGTTGGCGGCGGCTTCAAGTTATC +s rfbat.ENm005_1 573680 153 + 1483291 GGGCAGCG---------GCGGCAGCGGCTTCACAGGGGGCACGGTGTCTTCGTCCACGCCGAGCGACTGCCCGCCAGAGCTGAGCGCCGAGCTGCGCGGCGCCATGGGCGCTGCGGGCGTGCACCCCGGGGACAAGCTG---GGC---------GGCGGCGGCTTCAAGTCGTC +s armadillo.ENm005_1 570511 150 + 1490896 ------AG---------GCAGCGGCGGCTTCTCCGGAGGCACGGTGTCGTCGTCCACCCCGAGCGACTGCCCGCCAGAGCTGAGCACCGAACTGCGCGGCGCCATGGGCGCGGCGGGCGCGCACCCCGGGGACAAGCTGGGCGGC---------GGCGGCGGCTTCAAGTCCTC +s elephant.ENm005_1 587317 153 + 1396438 GGGCAGCG---------GCGGCAGCGGCTTCTCGGGGGGCACCGTGTCCTCCTCTACACCAAGCGACTGTCCGCCTGAGCTGAGCACCGAGCTGCGCGGCGCCATGGGCGCGGCGGGTGCGCACGCCGGGGACAAGCTG---GGC---------GGCGGTGGCTTCAAGTCCTC +s monDom1.scaffold_13487 2076042 162 + 4289508 GGGTAGCAGCAGCGGGGGCGGCGGCGGATTCTCCGGTGGCACGGTCTCCTCCTCTACACCAAACGACTGCCAGCCGGAGCTGAGCGCGGAGCTTCGAAACGCCATGGGCGCGGCGGGCGTGCACCCAGGGGACAAGCTG---GGC---------GGCGGCTGCTTTAAGtcctc +s xenTro1.scaffold_390 1097893 124 + 1157250 -------------------------GGCTTCTCTGG---CGCAGTGTCTTCCTCCACTATGAGCGACTCCCCCGCGGAGCTGAGTGCGGAGCTCCGTAACGCCATGG---CTATGGCTGCGGCAGCGGGCGACAAGTTG---GGC---------G-----CGTTTAAAGCTG-- + +a score=386002.0 +s hg17.chr21 33321273 57 + 46944323 CTCGTCCAGCAC------CTCGTCGTCTACGTCGTCG------GCGGCTGC--GTCGTCCACCAAGAAGGA +s panTro1.chr22 33287144 57 + 47338174 CTCGTCCAGCAC------CTCGTCGTCTACGTCGTCG------GCGGCTGC--GTCGTCCACCAAGAAGGA +s baboon.ENm005_1 605210 57 + 1530599 CTCGTCCAGCAC------CTCGTCGTCCACGTCGTCG------GCGGCCGC--GTCGTCCACCAAGAAGGA +s rheMac1.SCAFFOLD95266 35536 57 + 85465 CTCGTCCAGCAC------CTCGTCGTCCACGTCGTCG------GCGGCCGC--GTCGTCCACCAAGAAGGA +s marmoset.ENm005_1 666083 57 + 1506416 CTCGTCCAGCAC------CTCGTCGTCCACCTCGTCG------GCGGCCGC--ATCGTCCACCAAGAAGGA +s galago.ENm005_1 700010 57 + 1691059 GTCATCCAGCAC------CTCATCGTCCACGTCGTCG------GCGGCCGC--ATCGTCCACCAAGAAGGA +s rn3.chr11 31244526 57 + 87800381 TTCCTCCAGCAC------CTCCTCGTCCACGTCGTCG------GCGGCCAC--GTCTTCCACCAAGAAAGA +s mm6.chr16 90383669 57 + 97408558 TTCCTCCAGCAC------CTCCTCGTCCACGTCCTCG------GCGGCCAC--GTCTTCCACCAAGAAAGA +s rabbit.ENm005_59 9242 57 + 43844 CTCGTCCAGCAC------CTCGTCATCCACGTCGGCG------GCGGCCGC--GTCGTCCACCAAGAAAGA +s cow.ENm005_1 1041861 57 + 2199270 CTCGTCCAGCAC------CTCTTCGTCCACGTCGTCG------GCGGCCGC--GTCGTCCACCAAGAAGGA +s canFam1.chr31 30734310 47 + 41215879 ------------------cccggcgcgcacgcgggcg------gcggctcccgggcggACCCCAAAGAGGA +s rfbat.ENm005_1 573833 57 + 1483291 CTCGTCCAGCAC------GTCGTCGTCCACGTCGTCG------GCGGCTGC--GTCGTCCACCAAGAAGGA +s armadillo.ENm005_1 570661 57 + 1490896 CTCGTCCAGCAC------CTCTTCGTCCACGTCGTCG------GCGGCGGC--GTCGTCCACCAAGAAGGA +s elephant.ENm005_1 587470 57 + 1396438 CTCGTCCAGCAC------CTCCTCGTCCACATCGTCG------GCCGCCGC--ATCGTCCACCAAGAAGGA +s monDom1.scaffold_13487 2076204 69 + 4289508 gtcctccaccacttcgtcttcctcttccacctcatcgtcttcctcGGTCGC--ATCTTCTACCAAGAAGGA +s galGal2.chr1 98916206 43 + 188239860 ---GGCGTGGAC-----------TTTCCAAGTTGGCA------G-----AC--GTTGT-CACCATGCAAAA +s xenTro1.scaffold_390 1098017 37 + 1157250 --------------------------CTGCAGCGGCC------GCAGCGGC--TGTCGCGGCCAAGAAGGA + +a score=1280125.0 +s hg17.chr21 33321330 139 + 46944323 CAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTCCGCGAGGTCA---TGCCGTAC------GCACACGGCC------CTTCGGTG +s panTro1.chr22 33287201 139 + 47338174 CAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTGCGCGAGGTCA---TGCCGTAC------GCACACGGCC------CTTCGGTG +s baboon.ENm005_1 605267 139 + 1530599 CAAGAAGCAAATGACAGAGCCAGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGCGAGGTCA---TGCCGTAC------GCGCACGGCC------CTTCGGTG +s rheMac1.SCAFFOLD95266 35593 139 + 85465 CAAGAAGCAAATGACAGAGCCAGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGCGAGGTCA---TGCCGTAC------GCGCACGGCC------CTTCGGTG +s marmoset.ENm005_1 666140 139 + 1506416 CAAGAAGCAAATGACGGAGCCGGAGCTGCAGCAGCTTCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGCGAGGTCA---TGCCTTAC------GCGCACGGCC------CTTCGGTG +s galago.ENm005_1 700067 139 + 1691059 CAAGAAGCAGATGACTGAGCCGGAGCTGCAGCAGCTGCGCCTCAAAATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATAGCCATGGACGGCCTGCGCGAGGTCA---TGCCATAC------GCGCACGGCC------CGTCGGTG +s rn3.chr11 31244583 139 + 87800381 TAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGAGGGAGGTCA---TGCCGTAC------GCGCACGGCC------CGTCGGTG +s mm6.chr16 90383726 139 + 97408558 CAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGGGAGGTCA---TGCCTTAC------GCGCACGGGC------CGTCGGTG +s rabbit.ENm005_59 9299 139 + 43844 CAAGAAACAGATGACCGAGCCGGAGCTGCAGCAGCTGCGGCTGAAAATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGGCTGCGCGAGGTCA---TGCCGTAC------GCGCACGGCC------CGTCGGTG +s cow.ENm005_1 1041918 139 + 2199270 TAAGAAACAGATGACGGAGCCCGAGCTGCAGCAGCTGCGCCTCAAGATCAACAGCCGCGAGCGCAAGCGGATGCACGACCTCAACATCGCCATGGACGGGCTGCGCGAGGTCA---TGCCGTAC------GCGCACGGCC------CGTCGGTG +s canFam1.chr31 30734357 133 + 41215879 ---------------------GCAGCAACAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAACCTGGCCATGGACGCGCTGCGCGAGGTCATCCTGCCCTACTCGGCGGCGCACTGCCAGGGCGCGCCCGGC +s rfbat.ENm005_1 573890 139 + 1483291 CAAGAAGCAGATGACGGAGCCGGAGCTGCAGCAGCTCCGCCTGAAGATCAACAGCCGCGAGCGCAAGCGCATGCATGACCTCAACATCGCCATGGACGGGCTGCGCGAGGTCA---TGCCGTAC------GCTCACGGCC------CGTCGGTG +s armadillo.ENm005_1 570718 139 + 1490896 CAAGAAGCAGATGACGGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGGCTGCGCGAGGTCA---TGCCCTAC------GCGCACGGCC------CTTCGGTG +s elephant.ENm005_1 587527 139 + 1396438 CAAGAAGCAGATGACGGAACCCGAGCTGCAGCAGCTGCGCCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGGCTGCGCGAGGTCA---TGCCCTAC------GCGCACGGCC------CGTCGGTG +s monDom1.scaffold_13487 2076273 139 + 4289508 CAAGAAGCAGATGACTGAGCCAGAGCTCCAGCAGCTTCGGCTCAAGATCAACAGCCGGGAGCGCAAGCGGATGCACGACCTCAACATCGCCATGGACGGCCTTCGTGAAGTCA---TGCCGTAC------GCGCACGGAC------CCTCGGTG +s xenTro1.scaffold_390 1098054 139 + 1157250 CAAGAAGCAGATGAACGAGTGCGAGTTGCAGCAGCTGAGGCTGAAGATTAACAGCCGGGAGCGCAAGCGAATGCACGATCTGAATATCGCCATGGACGGGCTGCGGGAGGTGA---TGCCCTAC------GCACACGGGC------CCTCGGTG + +a score=968430.0 +s hg17.chr21 33321469 93 + 46944323 CGCAAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s panTro1.chr22 33287340 93 + 47338174 CGCAAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s baboon.ENm005_1 605406 93 + 1530599 CGCAAGCTTTCCAAGATCGCCACGCTGCTCCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s rheMac1.SCAFFOLD95266 35732 93 + 85465 CGCAAGCTTTCCAAGATCGCCACGCTGCTCCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s marmoset.ENm005_1 666279 93 + 1506416 CGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s galago.ENm005_1 700206 93 + 1691059 CGCAAGCTCTCCAAGATCGCCACGCTACTACTGGCGCGCAACTACATCCTCATGCTCACCAACTCACTGG-AGGAGATGAAACGACTGGTGAGC +s rn3.chr11 31244722 93 + 87800381 CGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACATCCTGATGCTCACCAACTCGCTGG-AGGAGATGAAGAGACTGGTGAGC +s mm6.chr16 90383865 93 + 97408558 CGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s rabbit.ENm005_59 9438 94 + 43844 CGCAAGCTCTCCAAAATCGCCACGCTGCTGCTGGCGCGTAACTACATCCTCATGCTCACCAACTCGCTGGAAGGAGATGAAGCGCCTGGTGAGC +s cow.ENm005_1 1042057 93 + 2199270 CGCAAGCTCTCCAAGATCGCCACATTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGACTGGTGAGC +s canFam1.chr31 30734490 93 + 41215879 CGCAAGCTCTCCAAGATCGCCACGCTGCTGCTCGCCCGCAACTACATCCTGCTGCTGGGCAGCTCGCTGC-AGGAGCTGCGCCGCGCGCTGGGC +s rfbat.ENm005_1 574029 93 + 1483291 CGCAAGCTCTCCAAGATCGCCACGCTGTTGCTGGCGCGCAACTACATTCTCATGCTCACCAACTCCCTGG-AGGAGATGAAGCGACTGGTGAGC +s armadillo.ENm005_1 570857 93 + 1490896 CGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCTCTGG-AGGAGATGAAGCGACTGGTGAGC +s elephant.ENm005_1 587666 93 + 1396438 CGCAAGCTCTCCAAGATCGCCACCCTGCTGCTGGCACGCAATTACATCCTCATGCTCACCAACTCGCTGG-AGGAGATGAAGCGGCTGGTGAGC +s tenrec.ENm005_54 1327 93 - 10647 CGGAAGCTCTCCAAGATCGCCACGCTGCTGCTCGCCCGTAACTACATCCTGCTGCTGGGCAGCTCGCTGC-AGGAGCTGCGCCGCGCCCTGGGA +s monDom1.scaffold_13487 2076412 93 + 4289508 CGCAAGCTCTCCAAGATAGCTACTCTTCTTCTAGCCCGCAACTACATCCTCATGCTCACCAACTCCTTAG-AGGAAATGAAGCGGCTGGTCAGC +s xenTro1.scaffold_390 1098193 93 + 1157250 CGCAAACTATCAAAGATCGCAACGCTGCTACTAGCGCGCAATTACATCCTGATGCTAAACAACTCGCTGG-AGGAGATGAAGCGCCTGGTCAGT + +a score=792867.0 +s hg17.chr21 33321562 133 + 46944323 GAGATCTACGGGGGCCACCAC------------------------------GC--TGGCTTCCACCCGTCGGCCTG---CGGCGGCCTGGCG-CACTCCGCGCCCCTGC-CCGCCGCCACCGCGCACCCGGCAGCAGCAGCGCACGCCGCACATCACC---------------------------CCGCGGTGCACC +s panTro1.chr22 33287433 133 + 47338174 GAGATCTACGGGGGCCACCAC------------------------------GC--TGGCTTCCACCCGTCGGCCTG---CGGCGGCCTGGCG-CACTCTGCGCCCCTGC-CCGCCGCCACCGCGCACCCGGCAGCAGCAGCGCACGCCGCACATCACC---------------------------CCGCGGTGCACC +s baboon.ENm005_1 605499 133 + 1530599 GAGATCTACGGGGGCCACCAC------------------------------GC--TGGCTTCCACCCGTCGGCCTG---TGGGGGCCTGGCG-CACTCCGCGCCCCTGC-CCGCAGCCACCGCGCACCCGGCAGCAGCAGCGCACGCAGCACATCACC---------------------------CCGCGGTGCACC +s rheMac1.SCAFFOLD95266 35825 133 + 85465 GAGATCTACGGGGGCCACCAC------------------------------GC--TGGCTTCCACCCGTCGGCCTG---TGGGGGCCTGGCG-CACTCCGCGCCCCTGC-CCGCAGCCACCGCGCACCCGGCAGCAGCAGCGCACGCAGCACATCACC---------------------------CCGCGGTGCACC +s marmoset.ENm005_1 666372 133 + 1506416 GAGATCTACGGGGGCCATCAC------------------------------GC--TGGCTTCCACCCGTCGGCCTG---CGGCGGCCTGGCG-CACTCCGCTCCCCTGC-CCGCTGCCACCGCGCACCCGGCAGCCGCAGCGCATGCCGCACATCACC---------------------------CCGCGGTGCACC +s galago.ENm005_1 700299 130 + 1691059 GAGATCTATGGCGGCCACCAT------------------------------GC--TGGCTTCCACCCGTCGGCCTG---TGGCGGCCTGGCT-CACTCCGCGCCGCTGC-CCGCCACCACCGCGCACCCCGCGGCC---GCGCACGCCGCGCACCACC---------------------------CGGCAGTGCACC +s rn3.chr11 31244815 133 + 87800381 GAGATTTACGGGGGTCACCAC------------------------------GC--CGGCTTCCACCCGTCGGCCTG---TGGCGGGCTGGCA-CACTCGACGCCTCTAC-CCACCGCCACGGCGCACCCTGCAGCCGCCGCGCACGCCGCGCACCACC---------------------------CGGCGGTGCATC +s mm6.chr16 90383958 133 + 97408558 GAGATCTACGGGGGTCACCAC------------------------------GC--CGGCTTCCACCCATCGGCCTG---TGGCGGGCTGGCA-CACTCGGCGCCTCTAC-CCACCGCCACGGCGCACCCCGCGGCCGCCGCGCACGCCGCGCACCACC---------------------------CGGCCGTGCACC +s rabbit.ENm005_68 490 130 + 8945 gagggc-gccgggcccgccgc------------------------------gccACGCCTGCTGCTGGCCGGCCTGCCCTTGCTGGCCGCCG-CGCCCGG---CTCTGTGCTGCTGGCGCCGGGCGCCGTGGGACCGCCGGACGCACTGCG-----CC---------------------------CCGCCAAGTACC +s cow.ENm005_1 1042150 133 + 2199270 GAGATCTACGGAGGCCACCAC------------------------------GC--CGGCTTCCACCCATCGGCCTG---CGGCGGCCTGGCG-CACTCTGCGCCCCTGC-CTGCCGCCACGGCTCATCCGGCGGCCGCGGCGCACGCGGCGCACCACC---------------------------CGGCGGTGCACC +s canFam1.chr31 30734583 103 + 41215879 GAGGgc-gccgggcccgccgc------------------------------gccgcgcctgctgctggccggcctg--------------------------cccctgc-tggccgcc-----gcgcccggc----tccgtgctgctggcgcctggcg---------------------------ccgtggggcccc +s rfbat.ENm005_1 574122 133 + 1483291 GAGATCTACGGCGGCCACCAC------------------------------GC--GGGCTTCCACCCGTCAGCCTG---CGGCGGCCTGGCG-CACTCAGCGCCCCTGC-CCGCCGCCACTGCGCACCCCGCGGCCGCCGCCCACGCGGCGCACCACC---------------------------CCGCGGTGCACC +s armadillo.ENm005_1 570950 133 + 1490896 GAGATCTACGGCGGTCACCAC------------------------------GC--CGGCTTCCACCCCTCGGCCTG---CGGCGGCTTGGCG-CACTcggcgcccctgc-ccgccgccaccgcgcaccccgcggccgccgcgcacgccgcgcACCACC---------------------------CGGCCGTGCACC +s elephant.ENm005_1 587759 130 + 1396438 GAGATCTACGGCGGCCACCAC------------------------------TC--CGGCTTCCACCCGTCGGCCTG---CGGGGGCCTGGCG-CACTCTgcgcccctgc-cggccgccacggcgcacccggcggcc---gcgcacgccgcgcACCACC---------------------------CAGCGGTGCACC +s tenrec.ENm005_54 1420 162 - 10647 GAGGGC-GCCGGGCCCGCCGC------------------------------TCCGCGCCTGCTGCTGGCCGGCCTG---CCGCTGCTCGCCGCCGCGCCGGGCTCGGTG-CTGCTGGCGCCCGGCGCCGTGGGGCCCCCGGATGCGCTGCGCCCCGCCAAGTACCTGTCCCTGGCGCTGGACGAGTCGCCCTGCGGC +s monDom1.scaffold_13487 2076505 130 + 4289508 GAGATCTATGGCGGCCACCAC------------------------------GC--TGGTTTCCACCCCTCAGCCTG---CGGAAGTTTGGCA-CATTCGGCGCCTCTGC-AGGCAGCCGCTGCGCACCCAGCAGCA---GCGCACGCCTCCCACCATC---------------------------CCGCAGTCCATC +s xenTro1.scaffold_390 1098286 124 + 1157250 GAGATCTACGGGGGGCACCACCACCATGCGGCCGCCGCAGCCGCAGCAGCAGC--CGCCTACCATCCCTCGGCCTG---CGGGGGGATGAGC-CATGGGGCCCCCTTGC----------CCGGACACCCAGTGGCC------------------CACC--------------------------------------- + +a score=176126.0 +s hg17.chr21 33321695 42 + 46944323 A-CCCCATCctgccgcccgccgccgcagcggctg-ctgccgccg +s panTro1.chr22 33287566 43 + 47338174 AACCCCATCctgccgcctgccgccgcagcggctg-ctgccgccg +s baboon.ENm005_1 605632 42 + 1530599 A-CCCCATCctgccgcccgccgccgcagcggctg-ctgcagccg +s rheMac1.SCAFFOLD95266 35958 42 + 85465 A-CCCCATCctgccgcccgccgccgcagcggctg-ctgcagccg +s marmoset.ENm005_1 666505 42 + 1506416 A-CCCCATCctgccgcccgccgccgccgcggctg-ctgcggccg +s galago.ENm005_1 700429 42 + 1691059 A-CCCCATCCTGCCGCCCGCAgctgctgccgccg-ctgctgccg +s rn3.chr11 31244948 42 + 87800381 A-CCCCATCCTCCCTCCAgcagccgcggccgcag-ccgccgcag +s mm6.chr16 90384091 42 + 97408558 A-CCCCATCCTCCCTCccgcagccgccgccgccg-ccgcagccg +s cow.ENm005_1 1042283 33 + 2199270 A-TCCCATCCTGCCTCCGGCCGCCGCCGCCGCCG---------- +s canFam1.chr31 30734686 38 + 41215879 ----ccgacgcgctgcgccccgccA-AGTACCTG-TCGCGGGCG +s rfbat.ENm005_1 574255 42 + 1483291 A-TCCCATCCTGCCTCccgcagccgcggccgccg-ccgctgcag +s armadillo.ENm005_1 571083 42 + 1490896 A-CCCCATCCTgccgcccgccgccgcggccgccg-cggccgccg +s elephant.ENm005_1 587889 39 + 1396438 A-CCCCATCCTGCCACCGGCAGCCGCCGCTG----CAGCCGCCG +s tenrec.ENm005_54 1583 30 - 10647 A-GTTCGCACTCCCAGGCGGCGGCGCTGGGG------------- +s monDom1.scaffold_13487 2076635 42 + 4289508 A-CCCAATATTGCCGCCCgctgcggcagcagcag-ctgcagctg +s xenTro1.scaffold_390 1098410 43 + 1157250 A-CCCTCTCCTGCCCACCCCAGCCTCCCTGGCAGCTTCCAGCCT + +a score=170439.0 +s hg17.chr21 33321737 48 + 46944323 ct------gcagccgcggctgTGTCCAG----CGCCTCTCTGCCCGGATCCGGGCTGC +s panTro1.chr22 33287609 48 + 47338174 ct------gcagccgcggctgTGTCCAG----CGCCTCTCTGCCCGGATCCGGGCTGC +s baboon.ENm005_1 605674 48 + 1530599 ct------gccgctgcggcGGTGTCCAG----CGCCTCTCTGCCCGGTTCGGGGCTGC +s rheMac1.SCAFFOLD95266 36000 48 + 85465 ct------gccgctgcggcGGTGTCCAG----CGCCTCTCTGCCCGGTTCGGGGCTGC +s marmoset.ENm005_1 666547 48 + 1506416 ct------gccgcagcggcAGTGTCCAG----CGCCTCTCTGCCCGGCTCCGGGCTGT +s galago.ENm005_1 700471 48 + 1691059 ct------gcggccgctgcGGTGTCCAG----CGCCTCTTTGCCTGGCTCCGGGCTGT +s rn3.chr11 31244990 48 + 87800381 cc------gctgccgcagcGGTGTCCAG----CGCTTCTCTGCCGGGCTCCGGGCTGT +s mm6.chr16 90384133 48 + 97408558 cc------gccgccgcAGCGGTGTCCAG----CGCCTCTCTACCGGGCTCCGGGCTGT +s canFam1.chr31 30734724 54 + 41215879 CTCGACGAGCCGCCCT----GCGGCCAGTTCGCGCTccccggcggcggcgcgggcggc +s rfbat.ENm005_1 608451 54 + 1483291 CTCGAGGAGCCTCCGT----GCGGCCAGTTCTCGCTccccggcggcggcgcgggcggc +s armadillo.ENm005_1 571125 48 + 1490896 cc------gccgccgccgccgTCTCCAG----CGCCTCCCTGCCGGGCTCCGGGCTGT +s elephant.ENm005_1 587928 48 + 1396438 CC------GCAGCTGCGGCGGTGTCCAG----CGCCTCCCTGCCCGGCTCGGGGCTGT +s tenrec.ENm005_54 1635 46 - 10647 CT------GCACCTGC-GCTGTCTGCAA-----GTTCCCTCACCTGGTTCCCGCCGGC +s monDom1.scaffold_13487 2076677 48 + 4289508 ca------gcagccgccgcggTTTCCAG----CGCCTCTCTTCCAGGCTCGGGCCTTT +s xenTro1.scaffold_390 1098455 42 + 1157250 CT------GGGGTGAGGGCAGCACCCCC----ACCGCCTCCACCCCCTCCTG------ + +a score=327365.0 +s hg17.chr21 33321785 88 + 46944323 CGT-CGGTCGGCTCCATCC--GTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTgccgcggccgccccgctggggggcgggggcggcgg +s panTro1.chr22 33287657 88 + 47338174 CGT-CGGTCGGCTCCATCC--GTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTGCCGCAgccgccccgctggggggcgggggcggcgg +s baboon.ENm005_1 605722 88 + 1530599 CGT-CGGTCGGCTCCATCC--GTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTgccgcggccgccccgctggggggcgggggTGGCGG +s rheMac1.SCAFFOLD95266 36048 88 + 85465 CGT-CGGTCGGCTCCATCC--GTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTgccgcggccgccccgctggggggcgggggTGGCGG +s marmoset.ENm005_1 666595 88 + 1506416 CGT-CTGTCGGCTCCATAC--GTCCACCGCACGGCCTGCTCAAGTCTCCGTCTgccgccgccgccgcccctctgggaggcgggggcggcgg +s galago.ENm005_1 700519 88 + 1691059 CGT-CGGTCGGATCCATTC--GGCCTCCGCACAGCCTGCTAAAGTCTCCGTCTGCAGCCGCGGCCGCCCCGCTcgggggcgggggcggtgg +s rn3.chr11 31245038 88 + 87800381 CCT-CGGTCGGATCCATCC--GGCCTCCTCACGGCCTGCTCAAGTCTCCATCGGCAGCCGCGGCCGCCCCTCTCGGAGGCGGGGGTGGAGG +s mm6.chr16 90384181 88 + 97408558 CCT-CGGTCGGATCCATCC--GGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGGAGGCGGGGGTGGAGG +s canFam1.chr31 30734778 76 + 41215879 ggcgcgggcggcccgggccTGTGCACCTGCGCGGTCTGC--AAGTTCCCGCACCTGGTCCCCGCCGGCCT------GGGCCTGG------- +s rfbat.ENm005_1 608505 76 + 1483291 ggcccgggcggccccggccTCTGCACCTGCGCTGTCTGT--AAGTTCCCGCACCTGGTCCCGGCCGGCCT------GGGCCTGG------- +s armadillo.ENm005_1 571173 88 + 1490896 CGT-CGGTCGGCTCGATCC--GGCCTCCGCACGGCCTTCTCAAGTCTCcgtcggcggccgcggcggcgccgctcggggcggggggcggcgg +s elephant.ENm005_1 587976 88 + 1396438 CAT-CGGTTGGCTCCATCC--GTCCCCCTCATGGCCTGCTCAAGTCTCcgtcggcggccgcggcggcccctctgggggccgggggcggcgg +s monDom1.scaffold_13487 2076725 88 + 4289508 CCG-CGGTCAGCTCCATAC--GACCCCCGCATGGCTTGCTCAAGTCGCCCTCGGCGTCCGTGGCCACCCCGTTGGGCAGTGGAGGGGGAGG +s xenTro1.scaffold_390 1098497 63 + 1157250 CCC-CACCTGCCTCCCATC--CATCTTCCCACGGTTTGCTGAAGTCTCC-----CAGTC--------------------CGGGGGCGCTGG + +a score=403510.0 +s hg17.chr21 33321873 69 + 46944323 cAGTGGGGCGAGCGGGGGCTTCCAGCACTGGGGCGGCATGCCCTGCCCC----TGCAGCATGTGCCAGGTGCC +s panTro1.chr22 33287745 69 + 47338174 cAGTGGGGCGAGCGGGGGCTTCCAGCACTGGGGCGGCATGCCCTGCCCC----TGCAGCATGTGCCAGGTGCC +s baboon.ENm005_1 605810 69 + 1530599 CAGTGGGGGCAGCGGGGGTTTCCAGCACTGGGGCGGCATGCCCTGCCCC----TGCAGCATGTGCCAGGTGCC +s rheMac1.SCAFFOLD95266 36136 69 + 85465 CAGTGGGGGCAGCGGGGGTTTCCAGCACTGGGGCGGCATGCCCTGCCCC----TGCAGCATGTGCCAGGTGCC +s marmoset.ENm005_1 666683 69 + 1506416 cagcgggggcagcgggggcTTCCAGCACTGGGGCGGCATGCCTTGTCCT----TGCAGCATGTGCCAGGTGCC +s galago.ENm005_1 700607 69 + 1691059 cagcgggggtagcgggggcTTCCAGCACTGGGGAGGTATGCCCTGTCCC----TGCAGCATGTGCCAGGTGCC +s rn3.chr11 31245126 69 + 87800381 CAGCGGTGGCAGCGGTGGCTTCCAGCACTGGGGTGGCATGCCGTGCCCC----TGCAGCATGTGCCAGGTGCC +s mm6.chr16 90384269 69 + 97408558 CAGCGGTGGCAGCGGTGGCTTCCAGCACTGGGGCGGCATGCCGTGCCCC----TGCAGCATGTGCCAGGTGCC +s canFam1.chr31 30734854 71 + 41215879 CCGCGGTGCAGGCGCAGTTTTCCA--AGTGAggggccccgcgcgggcccggggcgcgACCTAGGCCCGGCCTC +s rfbat.ENm005_1 574433 69 + 1483291 cagcgggggcagcggcggcTTCCAGCACTGGGGCGGCATGCCCTGCCCC----TGTAGCATGTGCCAGGTGCC +s armadillo.ENm005_1 571261 69 + 1490896 cagcgcgggcagcggcggTTTCCAGCACTGGGGTGGCATGCCCTGCCCC----TGCAGCATGTGCCAGGTGCC +s elephant.ENm005_1 588064 69 + 1396438 cagcgggggcagcagcagcTTCCAGCACTGGGGCGGCATGCCCTGCCCC----TGCAGCATGTGCCAGGTGCC +s monDom1.scaffold_13487 2076813 60 + 4289508 ---------CGGTGGTAGTTTCCAGCACTGGGGTGGGATGCCCTGCCCG----TGTAGCATGTGCCAGGTGCC +s xenTro1.scaffold_390 1098560 57 + 1157250 -----------GTGGGGGGTTCCCCCATTGGAGCGGAATGCCCTGTCCG----TGCAGTATGTGCCAAGTGC- + +a score=184225.0 +s hg17.chr21 33321942 33 + 46944323 GCCGCCG-----CACCACCACGTGTCGGCTATGGGCG-C +s panTro1.chr22 33287814 33 + 47338174 GCCGCCG-----CACCACCACGTGTCGGCCATGGGCG-C +s baboon.ENm005_1 605879 33 + 1530599 GCCGCCG-----CACCACCACGTGTCGGCCATGGGCG-C +s rheMac1.SCAFFOLD95266 36205 33 + 85465 GCCGCCG-----CACCACCACGTGTCGGCCATGGGCG-C +s marmoset.ENm005_1 666752 33 + 1506416 ACCTCCG-----CACCACCATGTGTCGGCCATGGGCG-C +s galago.ENm005_1 700676 33 + 1691059 ACCGCCA-----CACCACCACGTGTCGGCCATGGGCG-C +s rn3.chr11 31245195 33 + 87800381 GCCGCCA-----CACCACCACGTGTCGGCTATGGGCG-C +s mm6.chr16 90384338 33 + 97408558 GCCGCCG-----CACCACCACGTGTCGGCTATGGGCG-C +s canFam1.chr31 30691121 31 + 41215879 GCCGCCG-----CACCCCCACGTGCCGGCCATGGGC--- +s rfbat.ENm005_1 574502 33 + 1483291 ACCGCCG-----CACCACCACGTGTCGGCCATGGGCG-C +s armadillo.ENm005_1 571330 33 + 1490896 ACCGCCG-----CACCACCACGTGTCGGCCATGGGCG-C +s elephant.ENm005_1 588133 32 + 1396438 ACCGCCG-----CACCATCACGTGTCGGCCATGGGCG-- +s monDom1.scaffold_13487 2076873 33 + 4289508 TCCACCC-----CACCACCATGTTTCTGGTATGAGCA-C +s xenTro1.scaffold_390 1098617 28 + 1157250 -CCGCCAGTGCCCATCACCA---------TCTGAGCAG- + +a score=559815.0 +s hg17.chr21 33321975 37 + 46944323 C-GGCAGCCTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s panTro1.chr22 33287847 37 + 47338174 C-GGCAGCCTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s baboon.ENm005_1 605912 37 + 1530599 C-GGCAGCCTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s rheMac1.SCAFFOLD95266 36238 37 + 85465 C-GGCAGCCTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s marmoset.ENm005_1 666785 37 + 1506416 C-GGCAGCCTGCCGCGCCTCACCTCCGATGCCAAGTGA--------- +s galago.ENm005_1 700709 37 + 1691059 G-GGCAGCCTGCCCCGCCTCACTTCCGACGCCAAGTGA--------- +s rn3.chr11 31245228 37 + 87800381 C-GGCACCTTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s mm6.chr16 90384371 37 + 97408558 C-GGCACCTTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s cow.ENm005_1 853320 37 + 2199270 C-GGCAGCCTGCCGCGCCTCACCTCGGACGCCAAGTGA--------- +s canFam1.chr31 30691155 36 + 41215879 --GGCAGCCTGCCGCGCCTTGCCTCCGACGCCAAGTGA--------- +s rfbat.ENm005_1 574535 37 + 1483291 C-GGGAGCTTGCCGCGCCTCACCTCTGACGCCAAGTGA--------- +s armadillo.ENm005_1 571363 37 + 1490896 C-GGCAGCCTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s elephant.ENm005_1 588165 38 + 1396438 CGGGCAGCCTGCCGCGCCTCACCTCCGACGCCAAGTGA--------- +s monDom1.scaffold_13487 2076907 36 + 4289508 --ACCAGCCTCCCCAGACTCACTTCTGACGCCAAATGA--------- +s xenTro1.scaffold_390 1098645 46 + 1157250 C-GCCACCCTGTCCCGGCTCAGCGCAGATACCAAGTGACTGCCCCAT + +a score=1681795.0 +s hg17.chr21 13199283 46 - 46944323 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCTGA +s panTro1.chr22 13617237 46 - 47338174 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCTGA +s baboon.ENm005_1 495696 46 - 1530599 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTATGGACCTGA +s rheMac1.SCAFFOLD88249 2926 46 + 20534 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTATGGACCTGA +s marmoset.ENm005_1 559337 46 - 1506416 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGTTATGGACCTGA +s galago.ENm005_1 549204 46 - 1691059 CACTCTGATCTATAAATTTGGAAGAACTGAAGAGCTATGGACCTGA +s rn3.chr11 56225824 46 - 87800381 CACTCTGATCTACAAATTCGGAAGAACTGAAGAGCTCTGGGCCTGA +s mm6.chr16 6675235 46 - 97408558 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTCTGGGCCTGA +s rabbit.ENm005_60 8264 46 + 52615 CACTCTGATCTACAAGTTTGGAAGAACTGAAGAGCTATGGACCTGA +s cow.ENm005_1 585999 46 - 2199270 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTGTGGACCTGA +s canFam1.chr31 10137555 46 - 41215879 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTTTGGACCTGA +s rfbat.ENm005_1 527825 46 - 1483291 CACTCTGATCTACAAATTTGGAAGAACTGAAGAACTATGGACCTGA +s shrew.ENm005_8 7331 46 + 9131 CACTCTGATCTACAAATTCGGAAGGACGGAGGAGCTGTGGAGCTGA +s armadillo.ENm005_1 463744 46 - 1490896 CACTCTGATCTACAAATTTGGAAGAACTGAGGAGCTGTGGACCTGA +s elephant.ENm005_1 338758 46 - 1396438 CACTCTGATCTACAAGTTTGGAAGAACTGAGGAGCTATGGACCTGA +s monDom1.scaffold_13487 1613530 46 - 4289508 CACCCTCATCTACAAATTTGGACGAACAGAAGAATTATGGGGATAA +s platypus.ENm005_22 11594 46 - 23874 TACTCTAATCTACAAGTTTGGAAGACTAGAAGAATTATGAGCGGGA +s galGal2.chr1 89195096 46 - 188239860 TACTCTGATCTACAAGTTTGGAAGAACAGAGGAGTTATGGGGATGA + +a score=967135.0 +s hg17.chr22 19394206 85 - 49554710 GTTTGGCTCAGATGTGCTACAGCAACCCCTGCCCTCCATGCCCGCC---AAAGTTATCAGTGTAGATGAATTGGAATACCGACAGTGA +s panTro1.chr23_random 9155376 85 + 16744317 GTTTGGCTCAGATGTGCTACAGCAACCCCTGCCCTCCATGCCCGCC---AAAGTTATCAGTGTAGATGAATTGGAATACCGACAGTGA +s baboon.ENm004_1 1700418 85 - 1847427 GTTTGGCTCAGATGTGCTACAGCAACCCCTGCCTTCGATGCCTGCC---AAAGTTATCAGTGTAGATGAATTGGAATACCGACAGTGA +s rheMac1.SCAFFOLD66396 1762 85 - 18526 GTTTGGCTCAGATGTGCTACAGCAACCCCTGCCTTCGATGCCTGCC---AAAGTTATCAGTGTAGATGAATTGGAATACCGACAGTGA +s marmoset.ENm004_1 1550138 85 - 1756918 GTTTGGCTCAGATGTGCTACAGCAACCCCTGCCCTCCATGCCCACC---AAAGTTATCAGTGTAGATGAATTGGAATACCGACAGTGA +s rn3.chr14 83860507 85 + 112220682 GTTTGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCATGCCCACC---AAAGTCATCAGTGTAGATGAACTGGAATATAGACAGTGA +s mm6.chr11 3138792 85 + 121803636 GTTTGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCATGCCCACC---AAAGTCATCAGTGTAGATGAACTGGAATATAGACAGTGA +s cow.ENm004_1 1803695 85 - 1995970 GTTTGGCTCAGATGTGCTACAGCAGCCCCTGCCCTCCATGCCCACC---AAAGTCATCAGTGTAGATGAACTGGAGTACCGACAGTGA +s canFam1.chr26 13515973 85 - 41009621 GTTTGGCTCAGATGTGCTACAGCAACCCCTGCCCTCCATGCCTGCC---AAAGTCATCAGTGTAGATGAATTGGAGTACCGTCAATGA +s shrew.ENm004_1 34232 85 - 45715 GTTTGGCTCGGATGTGTTACAGCAGCCTCTGCCCTCCATGCCCGCC---AAAGTCATCAGTGTAGATGAATTGGAATACCGACAGTGA +s armadillo.ENm004_1 1505334 85 - 1528255 GTTTGGTTCAGACGTGCTGCAGCAGCCCCTGCCCTCTATGCCCGCC---AAAGTCATCAGTGTAGATGAACTGGAATACCGACAGTGA +s elephant.ENm004_1 1756517 85 - 1794427 GTTTGGCTCAGATGTGCTGCAGCAGCCCCTCCCCTCTATGCCCGCC---AAAGTCATCAGCGTAGATGAGTTGGAATACCGACAGTGA +s tenrec.ENm004_1 28922 84 + 32497 GTTTAGCTCAGATGTGCTGCAGCA-CCCTTGCCTTCTATGCCTGCC---AAAGTCATCAGTGTAGACGAGCTGGAGTACCGACCGTGA +s monDom1.scaffold_14874 438522 85 - 760883 GTTCGGCTCAGACGTGCTGCAGCAGCCCCTGCCCTCGATGCCCTCC---AAAGTCATCAGCGTGGATGAGCTGGAGTATAGGCAGTGA +s platypus.ENm004_5 47617 85 + 51213 GTTTGGCTCGGATGTCTTGCAACAACCTCTCCCTTCTATGCCCTCC---AAAGTTATCAGCGTAGATGAACTGGAATATCGTCAGTGA +s galGal2.chr15 8931619 85 + 12438626 GTTTGGTTCAGATGTCTTGCAGCAGCCTCTCCCTTCCATGCCATCC---AAAGTCATCAGTGTAGATGAACTGGAATATCGGCAGTGA +s xenTro1.scaffold_169 1819560 85 - 1919217 GTTTGGTTCTGATGTTTTGCAACAACCTCTACCTTCTATGCCAGCA---AAAGTCATAAGTGTGGATGAACTGGAGTACCGACAATAA +s danRer2.chr6 24380872 88 + 33212616 GTTTGGTTCAGACATGCTGCAGCAGCCTCTCCCTTCCATGCCTTCCACTAAAGTGATCAGTGTTGATGAGCTCGAGTTCCGCCAGTGA + +a score=1156177.0 +s hg17.chr22 19394049 157 - 49554710 TTCTGCATCCTCCAGGCTCTGGTTCCCATGCAGCAGCTGTCAGCGTTCAGACAAC-CCCTCAGAACGTGCCCAGCCGGTCAGG-CCTGCCCCACATGCACTCCCAGCTGGAGCATCGCCCCAGCCAGAGGAG------CAGCTCCCCTGTGGGCCTTGCCAAATG +s panTro1.chr23_random 9155219 157 + 16744317 TTCTGCATCCTCCAGGCTCTGGTTCCCATGCAGCAGCTGTCAGCGTTCAGACAAC-CCCTCAGAACGTGCCCAGCCGGTCAGG-CCTGCCCCACATGCACTCCCAGCTGGAGCATCGCCCCAGCCAGAGGAG------CAGCTCCCCTGTGGGCCTTGCCAAATG +s baboon.ENm004_1 1700261 157 - 1847427 TTCTGCATCCTCCAGGCTCTGGTTCCCAGGCAGCAGCTGTCAGCGTTCAGACAAC-TCCTCAGAACATGCCCAGCCGGTCGGG-CCTGCCCCACATGCACTCCCAGCTGGAGCATCGCCCCAGCCAGAGGAG------CAGCTCCCCTGTGGGCCTTGCCAAATG +s rheMac1.SCAFFOLD66396 1605 157 - 18526 TTCTGCATCCTCCAGGCTCTGGTTCCCAGGCAGCAGCTGTCAGCGTTCAGACAAC-TCCTCAGAACATGCCCAGCCGGTCGGG-CCTGCCCCACATGCACTCCCAGCTGGAGCATCGCCCCAGCCAGAGGAG------CAGCTCCCCTGTGGGCCTTGCCAAATG +s marmoset.ENm004_1 1549981 157 - 1756918 TTTTGCATCCTCCAGGCTCTGGTTCCCAGGCAGCAGCTGTCAGTGTTCAAACAGC-CCCTCAGAATGTGCCCAGCCGGTCAGG-CCTGCCCCACATGCACTCCCAGCTGGAGCATCGCCCCAGCCAGAGGAG------CAGCTCCCCCGTGGGACTCGCCAAATG +s rn3.chr14 83860353 154 + 112220682 TTCTGCATCCTCCAGGCTCTAGTTCCCAGGCAGCAGCTATCAACGTTCAGA---C-TCCTCCGAATGTACCCAGCCGGTCAGG-CCTGCCCCATATGCACTCCCAGCTGGAGCATCGCACCAGCCAAAGGAG------CAGCTCCCCCGTGGGTCTTGCCAAGTG +s mm6.chr11 3138638 154 + 121803636 TTCTGCATCCTCCAGGCTCTAGTTCCCAGGCAGCAGCTATCAGCGTTCAGA---C-TCCTCAGAATGTACCCAGCCGGTCGGG-CATGCCCCACATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAGGAG------CAGCTCCCCTGTGGGCCTTGCCAAATG +s cow.ENm004_1 1803538 157 - 1995970 TTCTTCATCCTCCAGGCTCTGGTTCCCAGGCAGCTGCTGTCAGCGTTCAGACGAC-TCCTCAGAATGTGCCCAGCCGGTCAGG-CCTGCCGCATGTGCACTCCCAGCTCGAGCACCGCCCCAGCCAGAGGAG------CAGCTCCCCTGTGGGCCTCGCCAAATG +s canFam1.chr26 13515816 157 - 41009621 TTCTTCATCCTCCAGGCTCTGGTTCCCCGGCAGCAGCTGTCAGCGTTCAGACAAC-CCCTCAGAATGTGCCCACCAGGTCAGG-CCTGCCCCACGTGCACTCCCAGCTGGAACATCGCCCCAGCCAGAGGAG------CAGCTCCCCAGTAGGCCTCGCTAAGTG +s shrew.ENm004_1 34074 158 - 45715 TTCTTCATCCTCCAGGCTCTGGTTCCCAGGCAGCAGCTGTCAGCATTCAGACAAC-CCCTCAGAATGTGCCCAGTCGGTCAGGGCCTGCCCCACATGCACTCCCAGCTGGAGCACCGCCCCAGCCAGAGGAG------CAGCTCCCCAGTGGGCCTCGCCAAATG +s armadillo.ENm004_1 1505177 157 - 1528255 TTCTGCATCCTCCAGGTTCTGGTTCCCAGGCAGCAGCCGTTGGCGTTCAGACAAC-CCCCCAGAATGTGCCCAGCCGGTCAGG-CCTGCCCCACATGCACTCTCAGCTGGAGCACCGCACCAGCCAGAGGAG------CAGCTCCCCTGTGGGCCTCGCCAAGTG +s elephant.ENm004_1 1756360 157 - 1794427 TTCTGCATCCTCCAGGCTCCGGTTCCCAGGCAGCAGCTGTCAGCATTCCGACAAC-TCCCCAAAATGTGCCCAGCCGGTCAGG-CCTGCCCCACGTGCACTCCCAGCTGGAGCACCGCTCCAACCAGAGGAG------CACCTCCCCGGTGGGCCTTGCCAAATG +s monDom1.scaffold_14874 438365 157 - 760883 TCCTCCATCCCCCGGGCTCTGGCTCACAGGGAACAGCCATTGGTGTCCAGACGCC-CCCCCAGAACCTGTCGGGCCGGCCGGG-CCTGCCCCACATTCCCCCACAGCTGGAGCACCGCCCCAGCCAGAGGAG------CACCTCCCCTGTGGGCTTGGCCAAGTG +s platypus.ENm004_5 47460 157 + 51213 TCTTACATTCTCCAAGCTCCAGCTCCCAGGGAATGACTGGTGGTGGACAAACCAC-CTCCCAGAACACGCCTGGTCGTTCTGG-ACTGCCTCATGTACACTCGCAGCTCGACCATCGCTCCAGCCAGCGAAG------TGGTTCTCCTGTTGGCCTTGCAAAATG +s galGal2.chr15 8931462 157 + 12438626 CTTTACATTCCACAGGCACTGGAGCACAGGGATCACCTGCTGGTGTGCAAACAAC-ACCTCAGAATGTGCCGTCTCGGACTGG-ATTATCTCATGGGCACGCGCAGCTCGACCATCGTCCCAGCCAGAGAAG------TGGCTCTCCCATTGGCCTTGCAAAGTG +s xenTro1.scaffold_169 1819440 120 - 1919217 CTATGT-TTTTTTAGGTTCGGGTCTACATGC-----------------------T-CCTCCGCAAGGTAT-------GACAAA-CCGCCCCAACATGCAC------ATTGAGCAGCGTCCTTCTCAGAGAAG------TACTTCTCCTGTAGGCCTGGCCAAGTG +s danRer2.chr6 24380745 127 + 33212616 TTTTAACGCCTATTTTCTCTTCAG------------------ATCTTCATGTGGCTCCCTCAGGAGGCCCCCAGTC--------CCAGAGCCACGGTCCC------------CATCGGACAAACCAGCGGAGAGGTGCAAGTCCCCCTCTGGGCCTGGCCAAGTG + +a score=467760.0 +s hg17.chr22 30665273 2 + 49554710 AT------------------ +s panTro1.chr23 30832251 2 + 50034486 AT------------------ +s baboon.ENm004_1 683101 2 + 1847427 AT------------------ +s marmoset.ENm004_1 768746 2 + 1756918 AT------------------ +s galago.ENm004_1 253015 2 + 1606733 AT------------------ +s rn3.chr14 28756724 2 - 112220682 AT------------------ +s mm6.chr5 31507522 2 + 150339831 AT------------------ +s rabbit.ENm004_46 12119 2 + 60438 AT------------------ +s rfbat.ENm004_1 374904 2 + 1039260 AT------------------ +s armadillo.ENm004_1 547125 2 + 1528255 AT------------------ +s elephant.ENm004_1 583363 2 + 1794427 AT------------------ +s tenrec.ENm004_40 545 2 + 21576 AT------------------ +s monDom1.scaffold_14498 25170 2 - 165350 AT------------------ +s galGal2.chr15 3672628 2 - 12438626 AT------------------ +s xenTro1.scaffold_169 238168 0 + 1919217 -------------------- +s danRer2.chr10 8473064 20 + 36600514 AGCGTTTGACCAGAGAGCAT + +a score=1023332.0 +s hg17.chr22 30665275 85 + 49554710 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCTATGAAGGCG +s panTro1.chr23 30832253 85 + 50034486 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAAGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s baboon.ENm004_1 683103 85 + 1847427 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s marmoset.ENm004_1 768748 85 + 1756918 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s galago.ENm004_1 253017 85 + 1606733 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s rn3.chr14 28756726 85 - 112220682 GGGG--GACCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGCGGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s mm6.chr5 31507524 85 + 150339831 GGGG--GATCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGCGGAGCAGGCGGAGCGCTACGACGATATGGCCTCCGCCATGAAGGCG +s rabbit.ENm004_46 12121 85 + 60438 GGGG--GACCGTGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGATATGGCCTCCGCCATGAAGGCG +s canFam1.chr26 27923330 81 + 41009621 ------GACCGAGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s rfbat.ENm004_1 374906 85 + 1039260 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s armadillo.ENm004_1 547127 85 + 1528255 GGGG--GACCGGGAGCAGCTTTTGCAGCGGGCGCGGCTGGCCGAACAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s elephant.ENm004_1 583365 85 + 1794427 GGGG--GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG +s tenrec.ENm004_40 547 85 + 21576 GGGG--GACCGGGAGCAGCTCCTTCAGCGGGCCCGGCTGGCCGAGCAGGCGGAGCGCTACGATGACATGGCGTCGGCCATGAAAGCG +s monDom1.scaffold_14498 25172 85 - 165350 GGGG--GACCGGGAGCAGCTGCTGCAGCGCGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGATATGGCCTCCGCCATGAAGGCG +s galGal2.chr15 3672630 85 - 12438626 GGGG--GACCGAGAGCAGCTGCTGCAGCGAGCCCGCCTGGCCGAGCAGGCGGAGAGATACGACGACATGGCCTCGGCCATGAAGTCG +s xenTro1.scaffold_169 238168 81 + 1919217 ------GATCGGGAGCAGCTGCTGCAGAGAGCCCGCTTAGCGGAGCAGGCGGAAAGATATGAGGACATGGCGGCAGCAATGAAATCG +s tetNig1.chr16 4004616 85 + 8976435 --GGTCGACCGCGAGCAGCTGGTGCAGAAAGCCAGGCTGGCTGAACAGGCTGAGAGGTATGATGATATGGCCGCTGCAATGAAATCG +s danRer2.chr10 8473084 85 + 36600514 --GGCTGACCGGGAACAACTGATCCAAAGAGCCCGTCTGGCGGAGCAGGCGGAGCGCTATGATGATATGGCCTCCGCGATGAAGCTG + +a score=1983894.0 +s hg17.chr22 18615464 192 - 49554710 GGATGCCTCAAGAAAGCTTATGACTTG-TTCTGCGGTTTG------CAGAAG---GGACCCAAGCTAACCAAGGAGGAGGAGGAAGCCTTGAGCAAGAAGCTCACAGACACGTCTGAGAGGCCCTCGTGGAGGACAATAGTGAACATCAACGCCATCCTCCTCCTGGCTGTGGTGGTCTTTATTCACGGCTACTATGCCTGA +s panTro1.chr23 18939900 192 - 50034486 GGATGCCTCAAGAAAGCTTATGACTTG-TTCTGCGGTTTG------CAGAAG---GGACCCAAGCTAACCAAGGAGGAGGAGGAAGCCTTGAGCAAGAAGCTCACAGACACGTCTGAGAGGCCCTTGTGGAGGACAATAGTGAACATCAACGCCATCCTCCTCCTGGCTGTGACGGTCTTTATTCACGGCTACTATGCCTGA +s baboon.ENm004_1 909091 192 - 1847427 GGATGCCTCAAGAAAGCTTATGACTTG-TTCTGCGGTTTG------CAGAAG---GGACCCAAGCTAACCAAGGAGGAAGAGGAAGCCTTGAGAAAGAAGCTCACAGACACATCTGAGAGGCCCTTGTGGAGGGCAATAGTGAACATCAACGCCATCCTCCTCCTGGCTGTGGTGGTCTTTATTTATGGCTACTATGCCTGA +s rheMac1.SCAFFOLD115250 60460 192 + 79719 GGATGCCTCAAGAAAGCTTATGACTTG-TTCTGCGGTTTG------CAGAAG---GGACCCAAGCTAACCAAGGAGGAAGAGGAAGCCTTGAGAAAGAAGCTCACAGACACATCTGAGAGGCCCTTGTGGAGGACAATAGTGAACATCAACGCCATCCTCCTCCTGGCTGTGGTGGTCTTTATTTATGGCTACTATGCCTGA +s marmoset.ENm004_1 1061547 192 + 1756918 GGATGCCTCAAGAAGACTTATGACTTG-TTCTGTGGTTTG------CAGAAG---GGACCCAAGCTAACCAAGGAGGAGGAGGAAGCCCTGAGCAAGAAGCTCACAGACACATCTGAGAGGCCCTTGTGGAGGACAGTAGTAAACATCAACGCCATCCTCCTTCTAGCTGTGGTGGTCTTTATTCATGGCTACTACGCCTGA +s galago.ENm004_1 1116678 195 - 1606733 GGATGTCTCAGGAAGACTTGGGACTTA-TTCTGCGGTTTG------CAGGAGACGGGACCCAAGCTGACCAAGGAGGAGGAAGAGGCCCTTAGGAAGAAGCTGACCGACACGTCTGAGAGGCCCTTCTGGAGGACTGTGGTAAACATCAACGCCATCCTCCTCCTGGCTGTGGTTGTCTTTGTTTACGCCTATTTTGCCTGA +s rn3.chr20 42420521 195 - 55296979 GGATGTCTCAAGAAGACTTATGACCTA-TGCTGTGGTTTG------CAAAGAGCGGAACCCAAGCTGACTAAAGAGGAGGAAGAAGCCCTGAAGAAGAAGCTGACAGACACATCCGAGAAGCCCTTCTGGCGGACGGTCGTGAACGTCAATGTCATTGTCCTCTTGGCCGTGGCGGCTTTTTTCTATGGCTATTTTGCCTGA +s mm6.chr10 76290819 183 + 130291745 GGATGTCTCAAGAAGACGTGTGACCTA-TTCTGTGGTTTG------CAAAGAGCTGAATTCAAGTTGACTAAAGTAGAGGAGGAAGCT------------CTGACAGACACAACAGAGAAGCCCTTCTGGCGGACGGTCATGAACGTCAATGTCATCCTCCTCTTGGCTGTAGCAGCGTTTTTCTATGGCTATTTTGCCTGA +s rabbit.ENm004_9 6617 195 + 12454 GGCTGTCTCAAGAAGGCATATGACCTG-TTCTGCGGCTTG------CAGAAGATGGGACACAAGCTGACCCCAGAGGAGAAGAAAGCCCTGGGGCAGAAGCTGACAGACACATCGGAGAAGCCCTTGTGGAGGATGGTAGTGAACATTAACGCCATCATCCTCCTGGCCGTGACCGTCTTTATGCATGCCTATTTTGCCTGA +s cow.ENm004_1 1306372 195 - 1995970 GGATGTCTCAGGAAGGCTTACGACTTG-TTCTGCGGTTTG------CAGAGGAAAGGCCCCAAACTGAGCGAAGAGGAGGAAGAAGCCCGGAAGAAGAAGCTGACAGACACGTCTGAGAAGCCCTTATGGAGGACAGTAGTGAACATCAACGCCATCATCCTCCTGGCAGTGGCAGTCTTTGTCCATGGCTACTTTGCCTGA +s canFam1.chr26 12905889 195 - 41009621 GGATGCCTCAGGAAGGCTTATGACATA-TTTTGTGGTTTG------CAGAAGACAGGTCCCAAACTGAGCAAAGAAGAGGAAGAAGCCCAGAAAAAGAAGCTGACAGACACATCTGAGAAGCCTTTATGGAGGACTATAGTGAATGTCAATGCCATTCTACTCCTAGCAGTGGCTGTCTTTGCCCATGGCTATTTTGCCTGA +s rfbat.ENm004_1 526255 195 - 1039260 GGATGTCTCAGGAAGACTTATGACTTA-TTCTGCGGTTTG------CAGAAGAAAGGCCCCAAGCTGAGCAAAGAGGAGGAAGAAGCCCTGAAGAAGAAGCTAACAGACACATCTGAAAAGCCTTTATGGAGGACGATAGTGAACCTCAATGCCATACTCCTCCTGACAGTGGCAGTTTTTGTCCATGCCTATTTTGCCTGA +s shrew.ENm004_6 32727 195 + 33761 GGCTGTTGCAGGCAGGCTTGTGACTTA-TTCTGTGGTCTG------CCAAAAAAAGGTCCCAAGCTGACCGAAGAGGAAAAAGAAGCTCAGATGAAGAAGTTGACAGACACATCAGAGAAGCCCTTTTGGAAGAGAGTAGTGAACGTTAATGCCATCCTCCTCCTAGCGGTGGCAGTCTTTTTCCATGGATATTATGCATAA +s elephant.ENm004_1 928200 195 - 1794427 GGGTGTTTCAAGAAGGCTTATGACTTA-TTCTGCGGTTTG------CAGAAGAAAGGCCCCAAGTTGACCAAAGAGGAGAAAGAAGCCCTGGAGAAGAGGCTGAAGGACACATCTGAGAAGCCCTTGTGGAGGACTGTCGTAAACATCAACGGCATCCTCCTCCTGGCAGTGACGGTCTTTGTCCATGGCTACTATGCCTGA +s tenrec.ENm004_55 2735 198 - 6654 GGATGCTGCAGGAAGTTCTATGACCTG-TTCTGTGGGCTGGACCAACAGAAG---GGCCCTAAAATGACCAAGGAAGAAGAGGCAGCAATGAAGGAGAAAATGATGGACACGTCTGAGAAGCCTTTGTGGCGGACAATCGTGAATATCAATGGTGTCATCCTCCTGACTGTTGCCGTCTTCTGCCATGCCTATTTTGCCTGA +s monDom1.scaffold_12762 409827 198 - 595644 GGGTGTTTCAAGAGGACCTGGGATTTA-TTGTGTGGGCTGGAG---CCAAAGAAAGGCCCCAAGCTGACCAAGGAGGAGGAAGCTGCCCTGAAGAAGAAGTTGACAGACACGTCCGAAAAGCCCTTCTGGAGGAACGTGGTCAACGTCAGCGTCATCCTGCTCTTGACTGTGTATGTCTTCTACCACGGTTATTTTGCCTGA +s platypus.ENm004_21 38364 198 - 61797 GGATACTTTAAGCGTGCCTATGACTTC-TTCTGTGGTTTGGAAGTGCAGAAA---ACCCATAAAATGACTGAAGAGGAGGAGAAAGCTCTGAGAATAAGGCTTACTGACATTTCAGAGAAGCCCTTCTGGAAAAACATAGTGAATATCAACGCCATCATTCTCCTGGCTGTGGCTGTTTTCTTTCATGCTTATTTTGCATAA +s galGal2.chr15 3732727 198 - 12438626 GGATGCCTAAAGAAAGCTTACAACTGG-TTCTGTGGCTTAGACCAACAAAAA---GGACCCAAACTGAGCAAGGAGGAAGAGGAAGCGCTGAAGAAGAAACTGACTGACACATCAGAAGTGCCACTTTGGAGGAATGTTGTGAATATCAACGGCATCATCCTACTGACTGTGGCTGTATTTTGCCATGCCTTTTTTGCATAG +s xenTro1.scaffold_169 280442 187 + 1919217 AGTTGCTGGAGGAAATCTTACAACTGG-TTCTGTGGATTTGATGATAAGAAG---CCCCCCAAACTGAGTGAGGAAGAGAAGAAGGCCCTGGAGCAAAAGATGACGGACACTTCAGAGAAGCCCCTGTGGAGGAACGTGGTCAACATCAACGGCATCATCCTGCTGGCTGTAGCTGTGTTCTGCCATGCAT----------- +s tetNig1.chr4 4958064 195 - 6212533 ---TTGTGCAAGA-GGCTGGTAATGGGCTTCTGTGGGCTGGAA---CAGAACCAGGCGGTCAAACTGACCAAAGAAGAAGAAGCCGAGTTGCAGCGGAAGCTCACGGACACCACGGAGAAGCCGCTGTGGAGGAACGTGGTCAACGTCAACGCCCTCATCCTCCTGGCTGTTGCTTTCTTCTGTCATGGCTTTTTCGCATAA +s danRer2.chr10 8504904 198 + 36600514 GGCTGTTGTAAGAAGGCCTACAACTGG-TTCTGCGGCTTCGAT---CAAGGCAATGCTCCCAAACTGACTAAAGAACAGGAGGCTGAGCTGAAGATGAAGCTCACCGACACCACTGAGAAACCTCTATGGAGAAATGTGGTCAACGCTAACGCCGTTATCCTCCTCACCGTCTGCGTCTTTTTCCACGGTTTCTTCGGTTAA + +a score=149114.0 +s hg17.chr22 18615444 20 - 49554710 ATTATCCTGAGAA--ATCACGT +s panTro1.chr23 18939880 20 - 50034486 ATTATCCTGAGAA--ATCACGT +s baboon.ENm004_1 909071 20 - 1847427 ATTATCCTGAGCA--ATCACGT +s rheMac1.SCAFFOLD115250 60440 20 + 79719 ATTATCCTGAGCA--ATCACGT +s marmoset.ENm004_1 1061527 20 + 1756918 ATTATCCTGAGCA--ATCACGT +s galago.ENm004_1 1116658 20 - 1606733 ATTATTCTGAACA--ATCTCGT +s rn3.chr20 42420501 20 - 55296979 ACCAAACGGAGAA--ACCTCGT +s mm6.chr10 76290799 20 + 130291745 ACCAAACTGAGAA--ACCTCGT +s rabbit.ENm004_9 6597 20 + 12454 ATTCTCCCAAGAA--ATCTCGT +s cow.ENm004_1 1306352 20 - 1995970 ATAATCCTGAGGA--AACTCGT +s canFam1.chr26 12905869 20 - 41009621 ATAATCCTGAGAA--ACCCCGT +s rfbat.ENm004_1 526235 20 - 1039260 ATAATCCTGAGGA--AACTCGT +s shrew.ENm004_6 32707 20 + 33761 ATAATTCTGAGGA--AACTCGT +s elephant.ENm004_1 928180 20 - 1794427 ATAATTCTGAAGA--AACTCGT +s monDom1.scaffold_12762 409807 20 - 595644 CTGACCCTGAGGA--ATCACCA +s platypus.ENm004_21 38344 20 - 61797 ATGTTCCTGAGAC--AACTAAG +s galGal2.chr15 3732710 17 - 12438626 AGGAAAGTGAAGA--CCCA--- +s xenTro1.scaffold_169 280422 20 + 1919217 GTCATGCAGAGAA--AAAGCTG +s tetNig1.chr4 4958042 22 - 6212533 AGAACCCTCAGAACCACCAGGT +s danRer2.chr10 8504887 20 + 36600514 AGATGCGTGAGGA--GCCAGGC + +a score=1595854.0 +s hg17.chr5 131424298 162 + 180857866 ATGAGCCGCCTGCCCGTC------CTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCATGACCCAGACAACGCC-------CTT------GAAGACAAGCTGGGT----T---AACTGCTCTAACATGATCGATGAAATTATAACACACTTA---AAGCA---GCCACCTTTGCCTTTGCTG +s panTro1.chr4 137757118 162 + 188378868 ATGAGCCGCCTGCCCGTC------CTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCATGACCCAGACAACGTC-------CTT------GAAGACAAGCTGGGT----T---AACTGCTCTAACATGATCGATGAAATTATAACACACTTA---AAGCA---GCCACCTTTGCCTTTGCTG +s baboon.ENm002_1 186587 162 + 1082345 ATGAGCTGCCTGCCCGTC------CTGCTCCTGCTCCATCTCCTGGTCAGCCCCGGACTCCAAGCTCCCATGACCCAGACAACGTC-------CTT------GAAGACAAGCTGGGC----T---AACTGCTCTAACATGATCGATGAAATTATAACACACTTA---AACCA---GCCACCTTTGCCTTCGCCG +s rheMac1.SCAFFOLD172 91842 162 - 130365 ATGAGCCGCCTGCCCGTC------CTGCTCCTGCTCCATCTCCTGGTCAGCCCCGGACTCCAAGCTCCCATGACCCAGACAACGTC-------CTT------GAAGACAAGCTGGGC----T---AAGTGCTCTAACATGATCGATGAAATTATAACACACTTA---AACCA---GCCACCTTTGCCTTCACCG +s marmoset.ENm002_1 131755 159 + 1056904 ATGAGCCACCTGCCCATC------CTGCTC---CTCCTACTCCTGGTCAGCCCTGGACTTCAAGCTGCCCCAACCCAGACAATGCC-------CTT------GAAGACAACTCAGGT----T---AACTGCTCTAACTTGAGGGAGGAAATTGTAACACTCCTA---AACCA---GCCACCTTTGGCTTCATCA +s galago.ENm002_1 312632 168 + 1185430 CTGAGCAGCCTCCGTATCCTGCATCTGCACCTGCTCCTGCTGCTGCTCAGCCTTGGAGATCAAGCTTCCCAGGCTCAGGAGACATT-------CTC------AACAATACCATGGGA----T---AATTGCCACTCCATGCTCAGAGAAATTAGGGAATACCTA---AACAA---GCCACCTTTGCCTTCGCAG +s rn3.chr10 71032732 139 - 110733352 ACCAGCATCCTCTGCATG------CTGCTTCCGCTCCTGATGCTCTTCCACCAGGGACTCCAGTTT--------TCAGGCAGTG---------CCC------ACCGTTTACTCAGGACGTTG---GATTGCAGGACTATTGCCTTGGAGATTTTGGTGAAGCTC-----------------------CCAGTGA +s mm6.chr11 67783565 148 - 121803636 ACCAGCATCCACACCATG------CTGCTCCTGCTCCTGATGCTCTTCCACCTGGGACTCCAAGCT--------TCAATCAGTGGCCGGGATACCC------ACCGTTTAACCAGAACGTTG---AATTGCAGCTCTATTGTCAAGGAGATTATAGGGAAGCTC-----------------------CCAGTGA +s rabbit.ENm002_27 155026 141 - 159147 ACAAGCAGCCTCCTTGTC------CTGCACCTGCTCCTGCTCCTGTTCAGCCTTGGGCTCCAAGCT---------------------------CCC------ATAG----CCCAGGA----G---TACTGTGATACGACCATCGATGAAATTGCACATGATCTCAGCATGCT---TTCACCCTTGTTCTTGAAA +s cow.ENm002_1 88336 156 + 1026482 ATGAGCAGTCTCTCCATC------TTGCACCTCCTTCTGCTCCTG------CTTGCACTCCATGCTCCTCAGGCAAAGGGGTTGCC-------TGT------CGTGACATCGAGGAC----T---CCATATTCTATGTTGATGAAGGAAATTATGGATGACCTA---AAGAA---AATAACTCCGAGTCCAGAA +s canFam1.chr11 21697475 159 + 75769841 ATGAGCAGCTTCCCCATC------CTGCACCTTCTCTTGCTCCTG------CTTGGATGCCAAGTCCCACAGGCACAGGGGAGGCC-------TTT------TTCGACAGACCTGCC----TAAGCAATACTTCACAATGATCAATGAAATTATGGAGATGTTA---AACAA---GTCACCCTCGCCTTCAGAA +s rfbat.ENm002_1 196855 165 + 1031937 ATGAGCAGCCGCCCCATC------CTGCACGTGTTTCTGCTCCTG------CTCACACTCCACGCCCCTCGGGCACAGGCGCAGCC-------CATAAGGCAATCGAGGCAATTGAC----TAAGGACTATGCCAACATGATGGCAGAACTTGAGACCATCCTC---AACAA---TCCTACTGTGCCTCCGCCA +s shrew.ENm002_4 12091 141 + 27863 ATGAGCTGCCTTCCCA------------GACTTCTCTTGCTCGTT------CTCGGACTCCATGTGACTCAGGTCCAGGGG---------------------ACCGACAGCTTAAAA----T----CCTGCTTCCAGAGGACCACTGAAATTAGGACCATCCTA---AAGAA---CTCAACTTCACCTTCACCA +s armadillo.ENm002_1 188393 162 + 1193614 ATGGGGACACTCCCTGCC------CTGCCCCTGCTCCTGCTCCTGCTAGGCCTCGGGCTCCGAGCCCCTCAGGCCCAGGGGCTGCC-------GGT------GAACATCACTTTTAA----G---AAGTGCCAGATCATGGTCAAAGAAATTCAACAATTGCTA---AACAT---GATAACTTTGCGTCCAGGG +s elephant.ENm002_1 163836 162 + 635078 ATGAGCAGCCTCCCCACC------CTACACCTTCTCCTGCTCCTGCTCAGCCTTGAACTTCAAGCCCCCAAGGCCCAGGGGATGCC-------TGT------GACAGCACCCCAGCA----T------TACAGTGTGATGATCAATGAAATCAAGGAGATCTTA---CAGAAGTCTCCACCTTTGAATTCAGCA +s tenrec.ENm002_17 5979 168 - 11374 TCAAGCAGCCTCCGCAGC------CTGCACTTTCTTCTGCTCGCGCTTGTCCTTGGGCTTCAAGTCCCTCAGAGCCAGGAGATGCC-------TCT------GACAACACTCTCGCC----TAATGAATACTGTGACATGATCACCGAAATCCTGCATATCCTA---AATTCCTGGCCACCTGCACATCCATGG + +a score=1226763.0 +s hg17.chr5 49301194 71 - 180857866 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s panTro1.chr4 50489570 71 - 188378868 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s baboon.ENm002_1 769100 71 - 1082345 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s rheMac1.SCAFFOLD125981 56370 71 - 83070 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s marmoset.ENm002_1 801321 71 - 1056904 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGGCCTTGTGGATCAACAGAAGTTGACTGA +s galago.ENm002_1 714714 71 - 1185430 TCTCCAATAAGTGGTTCCATGAACGAGGACAAGAGTTCTTGAGGCCTTGTGGATCAACAGAAGTTGACTGA +s rn3.chr10 39564174 71 + 110733352 TCTCCAATAAGTGGTTCCATGAGCGAGGACAGGAGTTCTTGAGGCCTTGTGGGACAACGGAAGTCGATTGA +s mm6.chr11 53884031 71 + 121803636 TCTCCAACAAGTGGTTCCATGAGCGAGGACAGGAGTTCTTAAGACCTTGTGGAACAACGGAAGTTGATTGA +s rabbit.ENm002_15 124175 71 - 131241 TTTCCAACAAGTGGTTTCATGAACGAGGACAGGAGTTCCTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s cow.ENm002_1 739358 71 - 1026482 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAATTCTTGAGGCCGTGTGGATCGACAGAAGTTGACTGA +s canFam1.chr11 53887430 71 - 75769841 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAATTCTTGAGGCCATGTGGATCAACAGAAGTTGACTGA +s rfbat.ENm002_1 709196 71 - 1031937 TCTCCAATAAGTGGTTCCATGAACGAGGCCAGGAGTTCTTGAGGCCGTGTGGATCAACAGAAGTCGACTGA +s shrew.ENm002_26 17278 71 - 36978 TCTCCAATAAATGGTTCCATGAGCGAGGACAGGAGTTCTTGAGGCCATGTGGATCAACAGAAGTTGACTGA +s armadillo.ENm002_1 766196 71 - 1193614 TCTCCAATAAATGGTTCCATGAACGAGGACAGGAATTCTTGCGGCCTTGTGGATCCACAGAAGTTGACTGA +s elephant.ENm002_1 374697 67 - 635078 TTTCCAATAGGTGGTTCTGTGAGTGAGGACAAGAGTTCTTAAGAC----TGGATCAACAGAAGTTGACTGA +s tenrec.ENm002_37 2073 71 + 3017 TTTCCAATAAGTGGTTCCACGAGCGAGGACAGGAGTTCTTGAGGCCGTGTGGATCAACAGAGGTCGACTGA +s monDom1.scaffold_13206 2440934 71 - 4254530 TTTCCAATAAATGGTTCCATGAGCGGGGGCAGGAGTTCTTGAGACGATGTGGATCAACAGAAGTCGACTGA +s platypus.ENm002_17 4555 71 - 11151 TTTCAAATAAATGGTTCCATGAACGAGGACAGGAATTCTTGCGGCCTTGCGGATCCACAGAAGTTGATTGA +s galGal2.chr13 1525722 71 - 17279963 TTTCAAACAAATGGTTTCATGAAAGAGGAAACGAATTCTTAAGACCCTGTGGGAGAACAGAGGTTGACTGA +s tetNig1.chrUn_random 9715025 71 + 171761319 TATCCAACAAATGGATCCACGAACGAGGACAAGAGTGGCGACGACCTTGTGGCCTAGCTGAGGCTGAATGA +s danRer2.chr17 16610097 71 + 42274751 TATCGAACAAATGGATACATGAACGAGGTCAAGAATTCAGACGGCCCTGTGCATTATCTGAGGTGGAATGA + +a score=1189329.0 +s hg17.chr5 131621326 93 + 180857866 ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCGCCCCTCACCATCTCACGG +s panTro1.chr4 137954377 93 + 188378868 ATGCCCCATTCCGGGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCC-GGAGGGCGGCC-GGGACTTCAGCGCGCCCCTCACCATCTCACGG +s baboon.ENm002_1 378441 93 + 1082345 ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCGCCCCTCACCATCTCGCGG +s rheMac1.SCAFFOLD35277 8673 93 + 87441 ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCGCCCCTCACCATCTCGCGG +s marmoset.ENm002_1 318554 93 + 1056904 ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCGCCCCTCACCATCTCGCGG +s galago.ENm002_1 532402 93 + 1185430 ATGCCCCACTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCACCCCTCACCATCTCGCGG +s rn3.chr10 71238657 93 - 110733352 ATGACCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GTGACTTCAGTGCCCCCCTCACCATCTCGCGG +s mm6.chr11 67981862 93 - 121803636 ATGACCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGTGCTCCCCTCACCATCTCGCGG +s rabbit.ENm002_15 73204 95 + 131241 ATGCCCCACTCCGTGACCCTGCGCGGCCCTTCGCCCTGGGGCTTCCGCCTTGGTGGGGAGCCCGGGACTTCAGCGCGCCCCTCACCATCTCGCGG +s cow.ENm002_1 342255 93 + 1026482 ATGCCCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGTACCCCTCACCATCTCGCGG +s canFam1.chr11 21937834 93 + 75769841 ATGCCGCACTCCGTGACCCTACGCGGCCCGTCGCCCTGGGGCTTCCGCCT-GGTAGGCGGCC-GGGACTTCAGCGCACCCCTCACCATCTCGCGG +s rfbat.ENm002_1 375487 93 + 1031937 ATGCCCCACTCCGTGACTCTGCGCGGCCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCACCCCTCACCATCTCGCGG +s shrew.ENm002_2 15566 93 + 110226 ATGTCCCTCTCCGTGACCCTGCGCGGCCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GGGACTTCAGCGCGCCCCTCACCATCTCGCGG +s armadillo.ENm002_1 504657 93 + 1193614 ATGCCCCACTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCT-GGTGGGCGGCC-GAGACTTCAGCGCGCCCCTCACCATCTCGCGG +s monDom1.scaffold_13206 2142138 92 + 4254530 ATGCCCCACACAGTCACTCTCCAGGGTCCCTCACCCTGGGGCTTCCG-CT-GGTGGGCGGCA-AGGACTTTAGTACCGCTCTCACCATCTCCCGG +s galGal2.chr13 15804608 93 + 17279963 ATGCCGCACTCGGTGGCCCTGCGCGGCCCCTCGCCGTGGGGTTTCCGCCT-GGTGGGCGGTA-AGGACTTCAGCACGCCGCTGACCATCTCCAGG +s tetNig1.chr7 2651983 93 - 11099225 ATGACTCAGACCGTGACACTGAAAGGACCCTCTCCTTGGGGGTTCCGGCT-GGTGGGAGGAC-GTGATTTCAGCACCCCTTTAACCATCTCCAGG +s fr1.chrUn 144492794 93 + 349519338 ATGTCGCAGACCGTTACACTAAAGGGACCCTCTCCTTGGGGGTTCCGGCT-GGTGGGAGGAC-GCGATTTCAGCACCCCGTTAACCATCTCCAGG +s danRer2.chr13 21369717 93 - 37658979 ATGCCTCAGCGGGTTGTTTTACAAGGTCCCGGGCCATGGGGATTCCGTCT-GGTCGGGGGTA-AAGATTTCGAGCAGCCTCTGACTATCTCGAGG + +a score=125058.0 +s hg17.chr5 49010314 11 - 180857866 GTGCACCGTAG +s panTro1.chr4 50198344 11 - 188378868 GTGCACCGTAG +s rheMac1.SCAFFOLD40231 28602 11 + 82136 GTGCACCATAG +s marmoset.ENm002_1 515263 11 - 1056904 GTGCACCGTAG +s galago.ENm002_1 406123 11 - 1185430 GTGCACCGTAG +s rn3.chr10 39235970 11 + 110733352 GTGCACCATAA +s mm6.chr11 53529277 11 + 121803636 GTGCACCATAG +s rabbit.ENm002_24 70135 11 - 167141 GTGCACCGTAG +s cow.ENm002_1 468636 11 - 1026482 GCGCACCATAG +s canFam1.chr11 53628245 11 - 75769841 GTGCACCATAG +s rfbat.ENm002_1 457276 11 - 1031937 GTGCCCCGTAG +s shrew.ENm002_10 11167 11 - 19628 GCGCACCCTAG +s armadillo.ENm002_1 468151 11 - 1193614 GTGCACCGTAG +s monDom1.scaffold_13206 2624204 11 + 4254530 GTGGGCAGTAA +s platypus.ENm002_9 15235 4 - 39966 -------GCAG +s galGal2.chr13 1369938 4 - 17279963 -------GCAG + +a score=879196.0 +s hg17.chr5 49010200 114 - 180857866 GGGATATTGGGCTGAGTCTACAGCGTGTCTTCACAGATCTGAAGAACA---TGGATGCCACC---TGGCTGGACAGCCTGCTGACCCCA---GTCCG---GTTGCCCTCC---ATCCAGGCCATTCCCT +s panTro1.chr4 50198230 114 - 188378868 GGGATATTGGGCTGAGTCTACAGCGTGTCTTCACAGATCTGAAGAACA---TGGATGCCACC---TGGCTGGACAGCCTGCTGACCCCA---GTCCG---GTTGCCCTCC---ATCCAGGCCATTCCCT +s baboon.ENm002_1 481253 114 - 1082345 GTGATATTGGGCTGAGTCTACAGCGCGTCTTCACAGATCTGAAGAACA---TGGATGCCACC---TGGCTGGACAGCCTGCTGACCCCA---GTCCG---GTTGCCCTCC---ATCCAGGCCATTCCCT +s rheMac1.SCAFFOLD40231 28488 114 + 82136 GTGATATTGGGCTGAGTCTACAGCGCGTCTTCACAGATCTGAAGAACA---TGGATGCCACC---TGGCTGGACAGCCTGCTGACCCCA---GTCCG---GTTGCCCTCC---ATCCAGGCCATTCCCT +s marmoset.ENm002_1 515149 114 - 1056904 GTGATATTGGGCTGAGTCTACAGCGTGTCTTCACAGATCTGAAGAACA---TGGATACCACC---TGGCTGGACAGCCTGTTTACTCCA---GTCCG---GTTGCCCTCC---ATTCAGGCTATTCCCT +s galago.ENm002_1 406006 117 - 1185430 GGGATACTGGGCTGAACCTACAACGCGTCTTCACAGATCTGAAGAACA---TGGACACCAGC---TGGCTGGACAGCCTGCTGACCCCA---GTCAG---GCTGCCCTCCTCTATCCAGGCCATTCCTT +s rn3.chr10 39235850 120 + 110733352 GGGACATCGAGATAGGCATACAGCGTGTCTTCACAGAGATGAAGAATA---TGGACCCCGTCATGTGGATGGACACCCTGCTGGGCAACTCTACCAG---GCCGCCCTCC---ATTCAGGCTATTCCTT +s mm6.chr11 53529154 123 + 121803636 GGGACATTGGGATAGGCATACAACATGTCTTCACGGAGATGAAGAATA---TGGACTCCATCATGTGGATGGACAGCCTGCTGGGCAACTCTGTGAGGCTGCCGCCCTCT---ATTCAGGCCATTCCTT +s rabbit.ENm002_24 70021 114 - 167141 GGGACATTGGTCTGAGCCTACACCGCGTCTTCACAGATCTCAAGAACA---TGGACAGCAGC---TGGTTGGACAGCCTGCTGCCCCAA---GTCAG---GCTGCCTTCT---ATCCAGGCCATTCCTT +s cow.ENm002_1 468534 102 - 1026482 GTTATATTGGCCTGA------------TATCTTCAGATATGAAGAACA---TGGATCCCAGC---TGGTTGGACAGCCTGCTCACCCCA---GTCAG---GCTGCCCTCC---ATCCAGGCCATTCCTT +s canFam1.chr11 53628143 102 - 75769841 GGTATGTTGGGCTGA------------TCTCTTCAGATCTGAAGAACA---TGGACACCAGC---TGGCTGGACAGCCTGTTGACTCCA---GTCAG---ACTGCCCTCC---ATCCAGGCCATTCCTT +s rfbat.ENm002_1 457162 114 - 1031937 GGGATATCGGGCTGAGCCTACACCGTGTCTTCACAGATCTGAAGAACA---TGGACACCAGC---TGGCTGGACAGTCTGCTGACCCCA---GTCAG---GCTGCCCTCC---ATCCAAGCCATTCCTT +s shrew.ENm002_10 11053 114 - 19628 GGGACCCGGGGATGAGCGTACACCCTGTCTTCACAGACCTGAAGAACA---TGGACTCCATC---TGGCTGGATAACATGCTCACCCCA---GTCAG---GCTGACTTCC---GTCCAGCCCATTCCCT +s armadillo.ENm002_1 468037 114 - 1193614 GAGATATTGGGCTGAGTCTCCAACGCGTTTTCACAGATCTGAAGAATA---TGGATGCCAGC---TGGCTGGAGAACCTGCTGACCCCC---GTCAG---GCTGTCTTCC---ATCCAGGCCATTCCTT +s monDom1.scaffold_13206 2624090 114 + 4254530 AAGTTATTGAATTGAATTTACATCAAGCCTTCACAGAGCTGAGAACCT---TGGATGCAAGT---TGGATGGACACCTTGTTGATGCCT---GTCCG---ACAAACTAGT---ATCCAAGCTATTTCCT +s platypus.ENm002_9 15133 102 - 39966 GGGACATCGAGCTGAAT------------TTCACTGACCTGAAAAGCT---TGGACCCCACC---TGGATGGACTCCATGCTGACCCTC---GTCCG---GCCCCCCAAC---ATCCAAGCCATCTCCT +s galGal2.chr13 1369845 93 - 17279963 GTGCAGCAGAGTTGGAGTTCCG------CATGATGGACCAGAAGAGCAGCCTGGACTTCTCC---TGGCTGGACACC---------------GTCAG---AC------CC---ATGCAGGCCATCTCCT + +a score=590628.0 +s hg17.chr6 108594662 25 + 170975699 ATGAGCAAGCCAGCCGGATCAACAA +s panTro1.chr5 110895281 25 + 175429504 ATGAGCAAGCCAGCCGGATCAACAA +s baboon.ENr323_2 350996 25 + 781787 ATGAGCAAGCCGGCCGGATCAACAA +s rheMac1.SCAFFOLD106250 5074 25 + 19134 ATGAGCAAGCCGGCCGGATCAACAA +s marmoset.ENr323_1 410083 25 + 749449 ATGAGCAAGCCGGCCGGATCAACAA +s galago.ENr323_1 271254 25 + 716639 ATGAGCAAGCCCGCAGGATCAACAA +s rn3.chr20 8761429 25 - 55296979 ATGAGCAAGCCCGCCGGATCAACAA +s mm6.chr10 87602147 25 - 130291745 ATGAGCAAGCCCGCCGGATCAACAA +s rabbit.ENr323_1 252898 25 + 552800 ATGAGCAAGCCGGCTGGATCAACAA +s cow.ENr323_1 266114 25 + 670861 ATGAGCAAGCCGGCCGGATCAACAA +s canFam1.chr12 68179741 25 + 75455811 ATGAGCAAGCCGGCCGGATCAACAA +s rfbat.ENr323_1 259972 25 + 601958 ATGAGCAAGCCCGCCGGATCAACAA +s shrew.ENr323_13 12916 25 + 40410 ATGAGCAAGCTCGCCGGATCAACAA +s tenrec.ENr323_22 7701 25 - 11388 ATGAGCAAGCCGGCCGGATCAACAA +s monDom1.scaffold_18722 1528134 25 - 10654489 ATGAGCAAGCCGACGGGATCAACAA +s platypus.ENr323_6 1768 25 + 6185 ATGAACAAGCCGGCCGGATCAACAA +s galGal2.chr3 42740700 25 - 108638738 ATGAGCAAGCCGGCGGGATCAACAA +s xenTro1.scaffold_975 180618 25 - 405956 ATGAGCAAACCGACAGGATCAACAA +s tetNig1.chr14 6199319 25 - 9655887 ATGAGTAAAGCGGCCGGCTCAACAA +s fr1.chrUn 210130082 25 + 349519338 ATGAGCAAAGCCGCCGGCTCAACAA +s danRer2.chr16 5047159 25 + 42763181 ATGAGCAAGCCTGCTGGTTCAACAA + +a score=1513845.0 +s hg17.chr6 62335548 106 - 170975699 GGTCGCTGGTCATCCTCTGGCACAGAACGAA-CGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s panTro1.chr5 64489302 106 - 175429504 GGTCGCTGGTCATCCTCTGGCACAGAACGAA-CGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s baboon.ENr323_2 384851 106 - 781787 GGTCGCTGGTCATCCTCTGGCACAGAATGAA-CGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s rheMac1.SCAFFOLD121188 42427 106 - 60196 GGTCGCTGGTCATCCTCTGGCACAGAATGAA-CGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s galago.ENr323_1 401453 106 - 716639 GGTCGCTGGTCATCCTCTGGCACAGAATGAA-CGTTGTCTCCACATGTTTTTACAGGATGAAATAATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s mm6.chr10 42641343 105 + 130291745 GGTCGCTGGTCATCCTCTGGCCCAGAATGAA-CGTTGTCTTCACATGTTTTTACAGGATGAAATTATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTG- +s rabbit.ENr323_1 261258 106 - 552800 GGTCGCTGGTCATCCTCTGGCACAGAATGAA-CGTTGTCTTCACATGTTTTTACAGGATGAAATCATAGATAAAAGCTATACTCCCTCTAAAAT-AAGGCATGCCTGA +s cow.ENr323_1 492746 106 - 670861 GGTCGCTGGTCACCCTCTGGCACAGAATGAA-CGTTGTCTTCACATGTTTTTACAGGATGAAATTATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s canFam1.chr12 7232900 107 - 75455811 GGTTGCTGGTCATCCTCTGGCACAGAATGAAACGTTGTCTTCACATGTTTTTACAGGACGAAATTATAGATAAAAGCTATACACCATCTAAAAT-AAGACATGCCTGA +s rfbat.ENr323_1 301856 106 - 601958 GGTCGCTGGTCATCCTCTTGCACAGAATGAA-CGTTGTCTTCACATGTTTTTACAGGATGAAATAATAGATAAAAGCTATACTCCATCTAAAAT-AAGACATGCCTGA +s shrew.ENr323_14 3002 107 - 16130 GGTCGCTGGTCATCCTCTGGCACAAAATGAA-CGATGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATTGAGACATGCCTGA +s armadillo.ENr323_1 357954 106 - 592733 GGTCGCTGGTCATCCTCTGGCACAGAATGAA-CGTTGTCTTCACATGTTTTTACAGGACGAAATAATCGATAAAAGCTACACTCCATCCAAAAT-AAGACATGCCTGA +s tenrec.ENr323_29 11724 106 + 27677 GGTCGCTGGGCATCCTCTGGCACAGAATGAG-CGTTGTCTTCACATGTTTTTACAGGACGAAATCATAGATAAAAGCTATACTCCATCCAAAAT-AAGACATGCCTGA +s monDom1.scaffold_18722 9049824 106 + 10654489 GGTTGCCGGCCACCCCTTGGCACAGAACGAA-CGCTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGTTATACTCCATCCAAAAT-CAGACATGCCTGA +s platypus.ENr323_2 103834 106 + 109570 GGTCGCTGGCCATCCTCTGGCGCAGAATGAG-CGTTGCCTGCATATGTTTCTACAAGACGAGATCATAGATAAGAGCTACACGCCATCCAAAAT-CCGGCATGCTTGA +s galGal2.chr3 65885276 106 + 108638738 GGTTGCAGGCCACCCACTGGCACAGAATGAG-CGCTGTCTTCATATGTTCTTACAAGATGAAGTAATAGACAAAAACTACACACCATCCAAAAT-AAGACATACTTGA +s xenTro1.scaffold_975 199631 106 + 405956 AGTTGCGGGACATCCATTGGCGCAGAATGAA-CGGTGCCTTCATATGTTTTTACAAGATGAAATTTTAGACAAGAACTACACCCCATCCAAAAT-AAGACATGCCTAA +s tetNig1.chr14 3449270 106 + 9655887 AGTGGCCGGTCATCCTCTAGCGCAGAACGAG-CGATGTCTGCACATGTTTCTACAGGACAAAGTCTTGGACAAGAACTACACCCCGTCCAAGAT-CAGACAAGCCTGA +s fr1.chrUn 139382558 106 - 349519338 AGTGGCCGGTCATCCTCTCGCCCAGAACGAG-CGATGCCTGCACATGTTTCTACAGGACAAGGTCTTGGACAAGAACTACACCCCCTCTAAGAT-CAGACAAGCCTGA +s danRer2.chr16 37703340 106 - 42763181 AGTTGCTGGTCATCCATTGGCCCAAAATGAG-CGCTGCCTGCACATGTTCCTACAGGATGAGTCTGTGGATAAAAACTACACCCCTTCCAAAAT-TAGACAAGCCTAA + +a score=556773.0 +s hg17.chr6 108722976 68 + 170975699 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATG +s panTro1.chr5 111023287 68 + 175429504 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATG +s baboon.ENr323_2 480166 68 + 781787 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCTTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATG +s rheMac1.SCAFFOLD90296 34859 68 - 128257 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCTTGCGCCCCTTAACACAGAGCCCGCTGAGAGGGAGATG +s galago.ENr323_1 392338 68 + 716639 ATGGCGGCCTCCTGGCCGCTCGTGGTTACCCTGAGCTCGTTAGCTCGGGGCCAACTGAGAGGGAGATG +s mm6.chr10 87706663 68 - 130291745 ATGGCGGCCTCCTGGTCGCCCTTGGTTACTCTGCGCTCCGCCGCGCGCAGCCGGCTGACTGGGAGAGG +s rabbit.ENr323_1 370933 68 + 552800 ATGGCGGCCTCCTGGTCGCCCTTGGTTACCCTGCGCTCCTTAACGCAATGCCGGCTGAGAGGGAAATG +s cow.ENr323_1 449447 65 + 670861 ATGGCGGCCTCATGGTCGCCCTTGGTTACCCTGTGC---TTAACGCAGAGCCGGCTGAGAGGGAGATG +s rfbat.ENr323_1 353445 65 + 601958 ATGGCGGCCTCCCTGTCGCCCTTGGTTACTCTGCGA---TTAGTGCAGAGCCGGCTGAGAGGGAGATG +s shrew.ENr323_20 5644 48 + 47540 CTGGTGATCTCCTGGATGCTTGTGGTTACCCTGCTT---TT-------AGCCAGCAAA---------- +s armadillo.ENr323_1 326123 68 + 592733 ATGGCGGTCTCCTGGTCGCCCTTGGTTGCTCTACGTTCCTTAGTGCCGAGCCGGCTGAGAGGGAGATG +s elephant.ENr323_1 501362 68 + 591253 ATGGCGACCTCCCGGTCTCCCTGGCTTGCTCTGCGCTCTTTAGTGCAGAGGCGGCTGAGAAGGAGATG +s tenrec.ENr323_36 10006 68 - 17812 ATGGCGACCTCCTGTGCTCCCTTGCTGACTGTGCGCTCGCTCGTGCAGAGGCGGTTGAGGGGGAGATT +s monDom1.scaffold_18722 1735980 68 - 10654489 ATGGCGGCTTCCTTGTCGCCCTGGGTTACTGTGCGGCCCCTGGTGCAGACCTGGGTGCGGGGCAGATG +s platypus.ENr323_2 40319 59 - 109570 GAGCCGGACGCTT-----CCCCTG----CCCTGCGCTCCACGATGCGCTCCAGCCCGAGGGGGAGAGG +s galGal2.chr3 42786700 30 - 108638738 AGGCTAGCATTCTCATCTTTTCTGGTTAAC-------------------------------------- +s xenTro1.scaffold_975 244927 53 - 405956 ATGGCGGGTGCCGGTTCGCCCTTGGTTTCTATTCGTT---TGCTATGGAG----------GGTACC-- + +a score=389664.0 +s hg17.chr6 108723044 71 + 170975699 TGTTGGGTGCGGGGCCTGG------------GCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGG-GAAGCCCTTTTGGA-----AAG +s panTro1.chr5 111023355 71 + 175429504 TGTTGGGTGCGGGGCCTGG------------GCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGG-GAAGCCCTTTTGGA-----AAG +s baboon.ENr323_2 480234 71 + 781787 TGTTGGGTGCGGGGCCCGG------------GCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGG-GAAGCCCCTTTGGA-----AAG +s rheMac1.SCAFFOLD90296 34927 71 - 128257 TGTTGGGTGCGGGGCCCGG------------GCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGG-GAAGCCCCTTTGGA-----AAG +s galago.ENr323_1 392406 71 + 716639 TGTTGGGTGTGGGGCTCGG------------GCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGG-AAAGCCCCTATGGA-----AAG +s mm6.chr10 87706731 71 - 130291745 TGTTGGGTGCGGGGCGCGG------------GTCGTCGCAATCCCTCCTCCGGCCCCTGGCCCTGG-GAAACCCCTGTGGA-----AAG +s rabbit.ENr323_1 371001 71 + 552800 TGTGGGGTTCGGGGCCTGG------------GTCGCTGCCCCTGCTCCTCCCGCCACCGCCCCTGG-GAAGCCCCTTTGGA-----AAG +s cow.ENr323_1 449512 71 + 670861 TGTTGGGTGCAGGGCTTGG------------GCCGCTGCTCTCACCCCTTCGGCCATCGCCCCTGG-AAACCCTCTTTGTA-----AAG +s rfbat.ENr323_1 353510 71 + 601958 TTTTGGGTGCAGAGCCTGG------------TCCGCTGCTCTCGCCCCTCCGGCCACCGCCCCTGG-GAACCCCTTTTGGA-----AAG +s shrew.ENr323_20 5692 62 + 47540 ---------------CCGG------------CCTGTTCCTCTAGTTTCTCTGGCCTTCATCCCTGGAAAAATCCTTTTAGATCTTCACA +s armadillo.ENr323_1 326191 71 + 592733 TATTGGGTGCGGGGCCTGG------------GCCGCCGCTCTCGGCCCTCAGGTCGCCGATCCTAG-GAAGCCCCTTTCGA-----AAG +s elephant.ENr323_1 501430 71 + 591253 TGTTGGGTTCGGGGACTGG------------GCCGCTGCTCTCGCCCCTCCGGCCGCCGCCCCTGG-GAAGCCCTTTTGGA-----AAG +s tenrec.ENr323_36 10074 50 - 17812 GGTTAGGTGCGGGGACTG---------------------------------GGCCGCCGCCCCTGG-GAAGCCCCTTTGGA-----AAG +s monDom1.scaffold_18722 1736048 83 - 10654489 CACCTGGTGGGGGGCTCGGGCAGCAGCCGCAGCCGCCGTTGGCTCTGCCCCTGCGACCGTCCCCGG-GAGGCCCCCTCGGA-----AAG +s galGal2.chr3 42777543 47 - 108638738 -----GGCGCGGCGTGTTG------------TCCGTC--------------TGCTGCCGGCACGGG------CCCTGCCGA-----GAG + +a score=5085599.0 +s hg17.chr7 113660517 168 + 158628139 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s panTro1.chr6 115716623 168 + 161576975 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s baboon.ENm012_1 268738 168 + 1163540 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s rheMac1.SCAFFOLD40450 60344 168 + 79367 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s marmoset.ENm012_1 156071 168 + 1183722 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s galago.ENm012_1 214008 168 + 1130250 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTCAGCACAGTGGAACTGCTGCATCTGCAACAACAGCAG +s rn3.chr4 40844510 168 + 187371129 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGGGATGGGAGATCAAG---TGGTGACACTAGCTCAGAAGTAAGCACAGTGGAGCTGCTGCATCTGCAACAACAGCAG +s mm6.chr6 15184557 168 + 150245815 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTTTAAGCAGC---CAATTAGATGCTGGCAGCAGGGATGGGAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTGGAGCTGCTGCATCTGCAACAACAGCAG +s rabbit.ENm012_30 37009 168 + 133243 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s canFam1.chr14 56181068 168 + 63549963 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCGGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s rfbat.ENm012_1 138663 168 + 1126473 ATGATG---CAGGAGTCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACCCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACGAGCTCTGAAGTAAGCACAGTGGAGCTGCTGCACCTGCAACAACAGCAG +s shrew.ENm012_22 7166 168 - 11301 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTTCAACAACAGCAG +s armadillo.ENm012_1 176742 168 + 1087501 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s elephant.ENm012_1 156619 168 + 1140293 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTGGAACTGCTGCACCTGCAACAACAGCAG +s monDom1.scaffold_12363 4741898 168 - 6632154 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACGAGCACTGAAGTAAGCCCAGTAGAACTGCTGCATCTGCAACAACAGCAG +s platypus.ENm012_1 161955 168 + 981645 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCACAATGGAATGAACACTCTGAACAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGACCAGG---CAGTGATACGAGCAGTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s galGal2.chr1 165171657 168 - 188239860 ATGATG---CAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACGAGCACTGAAGTAAGCACAGTGGAACTCCTGCATCTGCAACAACAGCAG +s xenTro1.scaffold_17 1043536 168 + 3981052 ATGATG---CAGGAATCTGCAACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTAAGCAGC---CAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TAGTGACACGAGCAGTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG +s tetNig1.chr19 770904 177 - 5206847 ATGATGATGCAGGAGTCGGCCACAGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCACCCTAAGCAGCAGCCAATTAGAGGCTGGCAGTAGAGATGGGAGATCAAGCGCTGGTGACACGAGCAGCGAAGTAAGCACAGTCGAGCTGCTGCATCTGCAACAACAGCAG +s fr1.chrUn 206218861 177 + 349519338 ATGATGATGCAGGAGTCGGCCACAGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCACCCTAAGCAGCAGCCAATTAGAGGCTGGCAGTAGAGATGGGAGATCAAGCGCTGGTGACACGAGCAGCGAAGTAAGCACAGTCGAGCTGCTGCATCTGCAACAACAGCAG +s danRer2.chrUn 63954790 167 - 173451396 ATGATG---CAGGAGTCGGCCAATGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCAGCCTAAGCAGC---CAATTAGATGCTGGCAGTAGAGATGGAAGATCAAG---TGGGGAGACGAGCAGTGAAGTAAGCGCAGTCGAGCTGCTGCATCTGCA-CAACAGCAG + +a score=5769709.0 +s hg17.chr7 42115750 230 - 158628139 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGTGAAGTCATGTGCTGTGGGAGAGGCTACGACACCTCCCATGTCACCCGGATGACCAAGTGTGGGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAAGCTCTGGATGTGCACACATGCAAGGCCCCCAAGAACGCTGACTGGAC----------------------A-ACCGCTACAT-GA +s panTro1.chr6 42777860 230 - 161576975 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGTGAAGTCATGTGCTGTGGGAGAGGCTACGACACCTCCCATGTCACCCGGATGACCAAGTGTGGGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAAGCTCTGGATGTGCACACATGCAAGGCCCCCAAGAACGCTGACTGGAC----------------------A-ACCCCTACAT-GA +s colobus_monkey.ENm001_1 890225 230 - 1990688 GCTCCCTGGGTACAGCAGGCCGAGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGCGAAGTCATGTGCTGTGGGAGAGGCTACGACACCTCCCATGTCACCCGGATGACCAAGTGTGGATGTAAGTTCCACTGGTGCTGTGCCGTGCGCTGTCAGGACTGCCTGGAGGCCCTGGACGTGCACACATGCAAGGCCCCCAAGAACGCTGACTGGAC----------------------A-ACCCCCACAT-GA +s baboon.ENm001_1 666649 230 - 1730495 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGCGAAGTCATGTGCTGTGGGAGAGGCTACGACACCTCCCATGTCACCCGGATGACCAAGTGTGGGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAGGCCCTGGATGTGCACACATGCAAGGCCCCCAAGAACGCTGACTGGAC----------------------A-ACCCCCACAT-GA +s rheMac1.SCAFFOLD105306 3693 230 + 127482 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGCGAAGTCATGTGCTGTGGGAGAGGCTACGACACCTCCCATGTCACCCGGATGACCAAGTGTGGGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAGGCCCTGGATGTGCACACATGCAAGGCCCCCAAGAACGCTGACTGGAC----------------------A-ACCCCCACAT-GA +s dusky_titi.ENm001_1 898051 230 - 2096432 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGTGAAGTCATGTGCTGTGGAAGAGGCTATGACACCTCCCATGTCACCCGGATGATCAAGTGTGGGTGTAAGTTCCACTGGTGCTGTGCTGTGCGCTGTCAGGACTGCCTGGAAGCCCTGGACGTGCACACGTGCAAGGCACCCAAGAACGCTGACTGGAC----------------------A-ACCCCCACAT-GA +s owl_monkey.ENm001_1 840611 230 - 2053814 GCTCCCTGGGTACAGCAGGTCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGTGAAGTCATGTGCTGTGGAAGAGGCTACGACACCTCCCATGTCACCAGGATGATCAAGTGTGGGTGTAAGTTCCACTGGTGCTGTGCCGTGCGTTGTCAGGACTGCCTGGAAGCCCTGGACGTGCACACGTGCAAAGCACCCAAGAACGCTGACTGGAC----------------------A-AGCCCCACAT-GA +s marmoset.ENm001_1 737214 230 - 1952403 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGTGAAGTCATGTGCTGTGGAAGAGGCTACGACACCTCCCATGTCACCCGGATGATCAAGTGTGGGTGTAAGTTCCACTGGTGCTGTGCCGTGCGCTGTCAGGACTGCCTGGAAGCCCTGGACGTGCACACATGCAAGGCACCCAAGAACGCTGACTGGAA----------------------A-AGCCCCACAT-GA +s mouse_lemur.ENm001_1 616267 230 - 1575427 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGCGAAGTCATGTGCTGCGGGAGAGGCTATGACACCTCCCGTGTCACCCGGATGACCAAGTGCGAGTGTAAGTTCCACTGGTGCTGCGCTGTGCGCTGTCAGGACTGCCTGGAGGCCCTGGACGTGCACACGTGTAAGGCCCCCAAGAACGCTGACTGGGC----------------------G-ACCCCCACAT-GA +s galago.ENm001_1 668888 230 - 1783853 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACCTGACGTCCCGGGGCATGGACAGCTGTGAAGTCATGTGCTGCGGGAGAGGCTATGACACCTCCCGTGTCACCCGGATGACCAAGTGCGAGTGTAAGTTCCACTGGTGCTGCGCCGTCCGCTGTCAGGACTGCCTGGAGGCCTTGGATGTGCACACATGCAAGGCCCCCAAGAACGCCGACTGGAC----------------------A-ACCCCCACAT-GA +s rn3.chr4 143551225 230 - 187371129 GCTCCCTGGGTACAGCAGGCCGTGTGTGCAACTTGACTTCCCGAGGCATGGACAGCTGCGAAGTTATGTGTTGTGGGAGAGGCTATGACACATCCCATGTCACCCGGATGACCAAGTGTGAGTGTAAATTCCACTGGTGCTGTGCCGTGCGCTGTCAGGACTGCCTGGAAGCCCTGGACGTGCACACATGCAAGGCCCCCAAGAGTGCCGACTGGAC----------------------A-ACTCCTACAT-GA +s mm6.chr6 132272329 230 - 150245815 GCTCCCTGGGTACAGCGGGCCGTGTGTGCAACTTGACTTCCCGAGGCATGGACAGCTGCGAAGTTATGTGTTGTGGGAGAGGCTATGACACATCCCACGTCACCCGGATGACCAAGTGTGAGTGTAAATTCCACTGGTGCTGTGCCGTGCGCTGTCAGGACTGCCTGGAGGCCCTGGACGTGCACACATGCAAGGCCCCCAAGAGTGCCGACTGGGC----------------------G-ACGCCTACAT-GA +s rabbit.ENm001_1 669436 230 - 1889755 GCTCCCCGGGTACAGCAGGTCGTGTGTGCAACCTGACGTCCAGAGGCATGGACAGCTGTGAAGTCATGTGCTGCGGGAGAGGCTACGACACCTCCCGCGTCACCCGGATGACCAAGTGCGAGTGTAAGTTCCACTGGTGCTGTGCCGTGCGTTGCCAGGACTGCCTGGAGGCCCTGGACGTGCACACATGCAAGGCTCCCAAGAGTGCTGACTGGAC----------------------A-ACCCCAACAT-GA +s cow.ENm001_1 942111 230 - 2061479 GCTCCCTGGGTACAGCGGGCCGTGTGTGCAACCTGACTTCCCGGGGCATGGACAGCTGCGAAGTCATGTGCTGTGGCAGAGGCTACGACACCTCCCACATTACCCGGAAGACCAAGTGTGAGTGTAAGTTCCACTGGTGCTGTGCCGTGCGCTGCCAGGACTGCGTGGAGGCCCTGGACGTGCACACGTGCAAGGCCCCGAAGAGCCCCGACTGGGC----------------------T-GCTCCGACAT-GA +s canFam1.chr14 4851287 230 - 63549963 GCTCCCCGGGGACGGCGGGCCGCGTGTGCAACCTGACTTCCCGCGGCATGGACAGCTGCGAGGTCATGTGCTGCGGGAGAGGCTACGACACGTCCCGCGTCACGCGGATGACCAAGTGCGAGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAGGCCCTAGACGTGCACACGTGCAAGGCCCCCACGAGCGCCGACTGGGC----------------------G-GCTCCCACAT-GA +s rfbat.ENm001_1 669070 230 - 1737318 GCTCCCTGGGTACAGCAGGACGTGTGTGCAACCTGACCTCCCGAGGCATGGACAGCTGTGAAGTCATGTGCTGCGGGAGAGGCTACGACACGTCCCGCGTCACGAGGATGACCAAGTGTGAGTGTAAGTTCCACTGGTGCTGTGCTGTGCGTTGTCAGGACTGCCTGGAGGCCCTGGACGTACACACATGCAAGGCTCCGAAGAGTGCCGACTGGGC----------------------A-GCTCCCACAT-GA +s shrew.ENm001_34 1814 230 - 60085 GCTCCTTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGAGGCATGGACAGCTGTGAAGTCATGTGCTGCGGGAGAGGCTATGACACCTCCCGAGTCACCCGGATGACCAAATGCGAGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAGGCCCTCGATGTGCACACGTGCAAGGCCCCCAAGAGCGCTGATTGGGC----------------------A-GCTCCCACTT-GA +s armadillo.ENm001_1 733040 230 - 1656816 GCTCTCTGGGTACAGCAGGCCGTGTGTGCAACCTGACTTCCCGAGGCATGGACAGCTGCGAAGTCATGTGCTGCGGGAGAGGCTACGACACCTCCCATGTCACCCGGATGACCAAATGTGAGTGTAAATTCCACTGGTGCTGTGCTGTGCGCTGTCAGGACTGCCTGGAGGCTCTGGACGTGCACACATGCAAGGCCCCCAAGAGTGCTGACTGGGC----------------------A-GTTCCCACAT-GA +s elephant.ENm001_1 505343 230 - 1533827 GCTCCCCGGGTACAGCAGGTCGAGTGTGCAACCTGACTTCCCGAGGCATGGACAGCTGCGAAGTCATGTGCTGCGGGAGAGGCTACGACACCTCTCGCATCACCCGGATGACCAAGTGCGAGTGTAAGTTCCACTGGTGCTGCGCCGTGCGCTGTCAGGACTGCCTGGAGGCTCTGGATGTGCACACGTGCAAGGCCCCCAAGAGCGCCGACTGGGC----------------------A-GCTCCTACAT-GA +s tenrec.ENm001_104 44299 230 - 64374 GCTCCCCAGGTACAGCAGGCCGAGTCTGCAACCTGACCTCCCGAGGCATGGACAGCTGCGAAGTCATGTGCTGCGGGAGAGGCTACGACACCTCCCGCGTCACCCGCATGACCAAGTGTGAGTGTAAGTTCCACTGGTGCTGTGCCGTGCGCTGTCAGGACTGCCTGGAGGCTCTGGACGTGCACACCTGCAAAGCCCCCAAGAGCGCCGACTGGGC----------------------G-GTGCCCACAT-GA +s monDom1.scaffold_13572 3944555 230 + 5827465 GTTCCCTGGGTACTGCAGGTCGGGTGTGCAACCTGACCTCCCGTGGCATGGACAGCTGTGAAGTCATGTGCTGCGGAAGGGGCTATGACACTTCCCGGGTCACCCGAATGACCAAATGCGAGTGTAAGTTCCATTGGTGCTGTGCTGTGCGCTGTCAGGACTGTTTGGAAGTAGTGGACGTGCACACGTGCAAAGCCCCCAAGAGTCCTGATTGGGT----------------------G-GCACCCACAT-GA +s platypus.ENm001_1 574264 230 - 1321799 GCTCCCTAGGGACGGCGGGCCGGGTGTGCAACCTGACGTCCCGCGGCATGGACAGCTGCGAGGTCATGTGCTGCGGGAGGGGCTACGACACGGCCCGCGTCACCAGGATGACCAAGTGCGAGTGCAAGTTCCACTGGTGCTGCGCCGTCCGCTGCCAGGACTGCCTGGAAGCCCTCGACGTGCACACGTGCAAAGCCCCCAGCAGCGCCAGCGAGGG----------------------C-GCCCCCACAT-GA +s galGal2.chr1 21683096 230 + 188239860 GCTCTCCGGGGACGGCCGGCCGGGTGTGCAACCAGACGTCCCGCGGCATGGACAGCTGTGAGGTGATGTGCTGCGGCCGTGGCTACGACACGTTGCGCGTCAGCAGGATGACCAAATGCGAGTGCAAGTTCCACTGGTGCTGCGCGGTGCGCTGCCAGGACTGCCTGGAGGAGGTGGACATCCACACGTGCAAGGCGCCCAAGGCTGCGGGCTGGGC----------------------C-TCCCGGACAT-GA +s xenTro1.scaffold_17 1744814 231 - 3981052 GTTCCCTTGGAACAGCTGGAAGAATCTGCAACCAGACCTCCCGTGGCATGGACAGCTGTGAGGTCATGTGCTGTGGTAGAGGGTATGACACTGCTCGCATCACCAAGATGTCAAAATGTGAGTGCAAGTTCCACTGGTGCTGCTCAGTACGGTGCAAGGACTGCATAGAAACTGTGGATATTCACACATGCAAAGCACCCAAAGGTGTCATCTGGAA----------------------GGAAAATTACAT-GA +s tetNig1.chr13 1695957 226 - 12408495 GCTCGATGGGCACCGGGGGGCGTGTCTGCAACAGGACGTCCCGTGGCGTGGATGGCTGCGAGGTGATGTGCTGCGGCCGCGGTTACGACACGTCCCGGGTCAGCCGCACCACCAAGTGCGAGTGCAAGTTCCACTGGTGCTGCGCCGTGCTGTGCCGGGACTGCCAGCAGCAGGTGGACGTGCACACCTGCAAGGGCCAGACG-----TGACCGGGA----------------------C-GCTCCGGTCCTCG +s fr1.chrUn 231850852 248 + 349519338 GGTCGCTGGGGACCGGCGGGCGCCTCTGCAACAGGACGTCCCCCGGCACCGACGGCTGCGAGGTGATGTGCTGCGGCCGGGGCTACGACACGTCCCGGGTCGGCCGCACCACCAAGTGCGAGTGCAAGTTCCACTGGTGCTGCGCCGTGCTCTGCCGAGACTGCCACCAGCAGGTGGACGTGCACACCTGCAAGGGCCTGACG-----TGACCTGGCCCCCCCCCGCGGAACCAGCAGTC-GTCCCGGCCCGCG +s danRer2.chr6 760809 224 - 33212616 GTTCTCTGGGTACGTCAGGACGGGTGTGCAACAAGTCCTCCAGAGGCATGGACGGCTGTGAGATCATGTGCTGCGGCCGCGGGTACGACACCACCCGTGTAAACCGCATGACCAAATGCGAGTGCAAGTTTAAATGGTGCTGCGCTGTGGAGTGCAGAGACTGCGAGGAAACGGTGGACGTCCACACTTGTAAACTACACAAG-----AAACCCGAC----------------------T-GGCTCGAT--TTG + +a score=1087008.0 +s hg17.chr7 116714099 15 + 158628139 ATGCAGAGGTCGCCT +s panTro1.chr6 119004369 15 + 161576975 ATGCAGAGGTCGCCT +s baboon.ENm001_1 1260793 15 + 1730495 ATGCAGAGGTCGCCT +s rheMac1.SCAFFOLD76133 25410 15 - 43354 ATGCAGAGGTCGCCT +s dusky_titi.ENm001_1 1381123 15 + 2096432 ATGCAGAGGTCGCCT +s marmoset.ENm001_1 1408109 15 + 1952403 ATGCAGAGGTCGCCT +s mouse_lemur.ENm001_1 1100561 15 + 1575427 ATGCAGAGGTCGCCT +s galago.ENm001_1 1272967 15 + 1783853 ATGCAGAGGTCGCCT +s rn3.chr4 44072448 15 + 187371129 ATGCAGAAGTCGCCT +s mm6.chr6 18219815 15 + 150245815 ATGCAGAAGTCGCCT +s rabbit.ENm001_1 1422589 15 + 1889755 ATGCAGAAGTCGCCT +s cow.ENm001_1 1310721 15 + 2061479 ATGCAGAGGTCGCCT +s canFam1.chr14 58860070 15 + 63549963 ATGCAGAGGTCGCCC +s rfbat.ENm001_1 1231531 15 + 1737318 ATGCAGAGGTCGCCT +s hedgehog.ENm001_1 1597441 15 + 2136267 ATGCAGAGGTCGCCT +s shrew.ENm001_58 26619 15 - 61370 ATGCAGAGGTCGCCC +s armadillo.ENm001_1 1169562 15 + 1656816 ATGCAGAGGTCGCCT +s elephant.ENm001_1 1165372 15 + 1533827 ATGCAGAAGTCGCCT +s monDom1.scaffold_13572 2152204 15 - 5827465 ATGCAGAGATCACCC +s platypus.ENm001_1 911324 15 + 1321799 ATGCAGAGATCACCG +s galGal2.chr1 166629624 15 - 188239860 ATGCAAAGGTCCCCC +s xenTro1.scaffold_17 2343562 15 + 3981052 ATGCAGAGATCCCCT +s tetNig1.chr13 10730568 15 + 12408495 ATGCAGAAGTCACCA +s fr1.chrUn 117688050 15 - 349519338 ATGCAGAAGTCACCA + +a score=935599.0 +s hg17.chr7 116714114 38 + 158628139 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s panTro1.chr6 119004384 38 + 161576975 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s colobus_monkey.ENm001_1 1280159 38 + 1990688 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s baboon.ENm001_1 1260808 38 + 1730495 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s rheMac1.SCAFFOLD76133 25425 38 - 43354 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s dusky_titi.ENm001_1 1381138 38 + 2096432 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s marmoset.ENm001_1 1408124 38 + 1952403 CTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG +s mouse_lemur.ENm001_1 1100576 38 + 1575427 CTGGAAAAGGCCAGCGTCCTCTCCAAACTTTTTTTCAG +s galago.ENm001_1 1272982 38 + 1783853 CTGGAAAAGGCCAGCGTCTTCTCCAAACTTTTTTTCAG +s rn3.chr4 44072463 38 + 187371129 CTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAG +s mm6.chr6 18219830 38 + 150245815 TTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAG +s rabbit.ENm001_1 1422604 38 + 1889755 CTGGAGAAGGCCGGCGTCCTCTCCAAACTTTTTTTCAG +s cow.ENm001_1 1310736 38 + 2061479 CTGGAAAAGGCCAGCGTCGTCTCCAAACTTTTTTTCAG +s canFam1.chr14 58860085 38 + 63549963 CTGGAAAAGGCCAGCGTCCTCTCCAAACTTTTCTTCAG +s rfbat.ENm001_1 1231546 38 + 1737318 CTGGAAAAGGCCAGCGTCATCTCCAAACTTTTTTTCAG +s hedgehog.ENm001_1 1597456 38 + 2136267 CTGGAAAAGGCCAGCGTCATCTCCAAACTTTTTTTCAG +s shrew.ENm001_58 26634 38 - 61370 CTGGAAAAGGCCGGCGTCATCTCCAAACTTTTTTTCAG +s armadillo.ENm001_1 1169577 38 + 1656816 CTGGAAAAAGCCAGCGTCATCTCCAAACTTTTCTTCAG +s elephant.ENm001_1 1165387 38 + 1533827 TTGGAAAGGGCCAGCGTCATCTCCAAACTTTTCTTCAG +s monDom1.scaffold_13572 2152219 38 - 5827465 CTGGAAAAGGCAAATCTCCTCTCGAAACTTTTCTTCAG +s platypus.ENm001_1 911339 38 + 1321799 CTGGAGCGAGCCAACCTCTTCTCCAAACTTTTCTTCAG +s galGal2.chr1 166629639 38 - 188239860 CTGGAGAAGGCGAACATCTTCTCCAAACTTTTCTTCAG +s xenTro1.scaffold_17 2343577 38 + 3981052 CTGGAGAAAGCCAGCATCTTTTCACAGATTTTCTTTAG +s tetNig1.chr13 10730583 38 + 12408495 GTGGAAGATGCCAACTTCTTATCCAAATTTTTCTTCTG +s fr1.chrUn 117688065 38 - 349519338 GTGGAAGATGCCAACTTCTTATCCAAATTTTTCTTCTG + +a score=3642203.0 +s hg17.chr7 41682427 171 - 158628139 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GTGAATTGGAACTTACAC---AAAAATGAACACC----TAGAAAAACCTAACAA---------AT----AG +s panTro1.chr6 42347079 171 - 161576975 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAATGAACACC----TAGAAAAACCTAACAA---------AT----AG +s colobus_monkey.ENm001_1 475144 171 - 1990688 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCTGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAAAA---GAGAATTGGAACTTACAC---AAAAATGAACACC----TAGACAAACCTAACAA---------AT----AG +s baboon.ENm001_1 246747 171 - 1730495 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCTGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAATGAACACC----TAGACAAACATAACAA---------AT----AG +s rheMac1.SCAFFOLD5248 90481 171 + 99469 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCTGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAATGAACACC----TAGACAAACCTAACAA---------AT----AG +s dusky_titi.ENm001_1 484922 171 - 2096432 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGCA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAATGAACACC----TAGAAAAAGCTAACAA---------AT----AG +s owl_monkey.ENm001_1 431969 171 - 2053814 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTAGAACTTACAC---AAAAATGAACACC----TAGAAAAACCTAACAA---------AT----AG +s marmoset.ENm001_1 318377 171 - 1952403 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAATGAACACC----TAGAAAAACCTAACAA---------AT----AG +s mouse_lemur.ENm001_1 263688 171 - 1575427 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAATGAACAAACACATAGAAAAACTTAA-------------T----AG +s galago.ENm001_1 291093 171 - 1783853 AGAGCTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGCCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATAAACAA-CAACTCAAAAGAA---GAGAATTGGAACTTACAC---AAAAACGAACAAA----TAGAAAAACCTAACAA---------AT----AG +s rn3.chr4 143036605 174 - 187371129 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCGCCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGCAGTAATACAAGGCA----------ACTAG--------------------------AAATCAATAA-CAACTCCAAAGAA---GAGAATTGGAACGTAGAC---AAACACGAACACG----TAGAAAAACGTAACAA---------AT----AG +s mm6.chr6 131828874 171 - 150245815 AGCGTTAAATCTTTTCTTCCTGTTCCTAGAAGCAAAGTCGCTCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------ACAGCAGCAGCAGCA---ATACAAGGCA----------ACTAG--------------------------AAATCAACAA-CAACTCCAAAGAA---GAGAATTGGACCTTAGAC---AAACACGAACAAG----TAGAAAAACCAAACAA---------AT----AG +s rabbit.ENm001_1 186398 171 - 1889755 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAATCGCCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------ACCAG--------------------------AAATCAACAA-CAACTCCAAAGAA---GAGAATTGGAACCTACAC---AAACATGAACAAG----TAGAAAAACCTAACAC---------AT----AG +s cow.ENm001_1 443929 166 - 2061479 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATAAACAA-CAACTC-----AA---GAGATTTGGAACCTACGC---AAAAATGAACAAG----TAGAAAAATCTAGCAA---------AT----AG +s canFam1.chr14 4465109 174 - 63549963 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGCCACCCAGTG---------------------------------------T-TC----CCCGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AACCG--------------------------AAATCAACAA-CAACTCAAAAGAA---GAGATTTGAAACTTCCACCAAAAAAACGAACAAG----TCGCAAAACCAAACCA---------AC----AG +s rfbat.ENm001_1 305098 171 - 1737318 AGAGTTAAATCTTTTCTTCCTGTTCCTCAAAGTAAAGCCACCCTGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATAAACAA-CAACTCAAAAGAA---GAGATTTGGAACTTACAC---AAAAATGAACAAG----TAGAAAAACCTAACAA---------AT----AG +s hedgehog.ENm001_1 244322 168 - 2136267 AGAGTTAGATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATAAACAA-CAACTCAAAAGAA---GAGATTTGGAACTTACGC--AAAAAATGAA---A----TAGAAAACCCTAAC-A---------AT----AG +s shrew.ENm001_27 13134 168 - 34682 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCACCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAACAA-CAACACAAAAGAA---GATATTTGGAATTTACGC---AAAAACGAA---G----TAGAAAAACCTAACAA---------AT----AG +s armadillo.ENm001_1 188459 171 - 1656816 AGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCTCCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAAAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AACAG--------------------------AACTAAATAA-CAACTCAAAAGAA---GAGATTTGGAACTTATGC---AAAAATGAACAAG----TACAAAAACCTAACAA---------AT----AG +s elephant.ENm001_1 103256 171 - 1533827 AGAGTGAAATCTTTCCTTCCTGTTCCTAGAAGTAAAGTCGCCCAGTG---------------------------------------T-TC----CCAGA------------ACACCAGAAGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATAAATAA-CAACTCAAAAGAC---GAGATTTGGAACTTACGC---AAAAATGAACAAG----TAGAAAAACCTAACAA---------AT----AG +s tenrec.ENm001_138 5076 171 - 6927 AGAGTTAAATCTTTTCTCCCTGTTCCTAGAAGTAAAATCACCCAGTG---------------------------------------C-TC----CCAGA------------ACACCAAACGAA------GCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AAATCAATAA-CAACTCAAAAGAC---GAGATTTGGAACTTACGC---AACAATGAACAAA----TAGAAAAACCTAACCA---------AT----AG +s monDom1.scaffold_13572 3408903 171 + 5827465 AGAGTAAAATCTTTTCTCCCTGTACCTAGAAATAAAGTCACCCAGTG---------------------------------------T-TC----TCCGA------------ACACCAAAAGAA---ACAGCAGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AA---GGAAA-TAACTCAAAAGAA---GAGATTTGGAACTCACGC---CAAAATGTGCAAA----TAGAAAAAACACACAA---------AT----AG +s platypus.ENm001_1 208147 176 - 1321799 AGAGTGAAATCTTTCCTCCCTGTGCCCAGGAATAAAGTCGCACAGTG---------------------------------------T-TC----TCCGA------------ACCCCAAAAGAAGTAACAGCAGCAGCAGCAGTA---ATACAAGGCA----------AAGAG--------------------------AAATTAACAA-CAACTTAAAAGAA---GAGTTTTGGGTCTTACGC---AAAAACATACAA-----TAGGTATACCTAACCA---------AT----AG +s galGal2.chr1 21521169 173 + 188239860 AGAGTTAAATCTTTTCTTCCTGTACCGAGAAGTAAAGTCACCCAGCC---------------------------------------T-TC----TCAGA------------GTACTAAAAAAA--------AGCAGCAGCAGTA---ATACAAGGCA----------AATAG--------------------------AGGCAGATAA-CGACACAAAAAAAAGAGAGATTTGGAATTTGCAC-AAAAAAAAGAACAAA----CAGAAAAATTTTAC-A---------AT----AA +s xenTro1.scaffold_17 1540977 169 - 3981052 AAAGCCAAGTCCTCGCTCCCTGTACCTCGAAACAAAGTTACCGCATG---------------------------------------TGTT----CCAG----------------CCAACAGAA------GGAGCAGCAGCA------ATACAAGGCA----------AAAAG--------------------------AGATCAATCA-TGACTCACACAAC---GAGATTTGGAACTTGCAC---AAAAATATTGAGA----TTAATAATGCAAACAA---------ATGATCAG +s tetNig1.chr13 1658180 232 - 12408495 -GGGCCAGATCGCAGCTCCCCGTCCCGAGCAGCAGGGGCCACCAGCC-ACGAGGCTCCGCCGCTTCCACCAGCAACGGCAGCCCCGT-CCGAAACCAGACGC---------CCCCCACCCGGG------GCAGAATCAGCAGCA---GAAGCAAGCCGATGCCCCCCAGCAG-------------CCcagcagcagcagcagcagcag-cCAAACACAAGAA---GACATCTGGATCCTCAAC---AGAGACG----------TGCATGACAGCAACAA---------AT----CG +s fr1.chrUn 192215464 240 - 349519338 -GCGCCAGATCGCAGCTCCCCATCCCGAGCAGCAGGGGGCAGCAGAC-ACGA------GCCGCTTCCACCGCCAACGGCAGCCCCGT-CCGCAACCAGACGC---------CCCCCACCCGGG------GCAGAATCAGCAGCA---GAACGAAGCCGATGCCCCCCAGCAGCAGCAACAACAACCTCTACCGTAACAACATCAACAACCCAAACACAAGAA---GACATCTGGATCTTCAAC---AGAGACG----------TGCATGACAACAACAA---------AT----AG +s danRer2.chr18 26884723 210 + 47708464 AGGCCCAGGTCCCATCTACCTGTCCCGAGCAGCAGAGGATCTCAGCAGATGA-------------------TCAGCAGCAGCTCTTC-CCT---TCAGACTCACAGCAGAGCCTCCACCAG---------------CAGCAGCA---GAACAAGGCAGCCCCCGTCCAACAA------------------------CAACACAAACAA-CCTCTCACAAGAC---CACATCTGGTTCCTGGAC---CCCAACT----------CTAATGAAAACTACAGTACCCACGGAT----AG + +a score=1575037.0 +s hg17.chr7 41682352 75 - 158628139 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s panTro1.chr6 42347004 75 - 161576975 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s colobus_monkey.ENm001_1 475069 75 - 1990688 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s baboon.ENm001_1 246672 75 - 1730495 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s rheMac1.SCAFFOLD5248 90406 75 + 99469 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s dusky_titi.ENm001_1 484847 75 - 2096432 GA---GG---TCTGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s owl_monkey.ENm001_1 431894 75 - 2053814 GA---GG---TCTGTCCTCTCAGCAGCCATCAAAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s marmoset.ENm001_1 318302 75 - 1952403 GA---GG---TCTGTCCTCTCAGCAGCCATCACAC------TACTGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s mouse_lemur.ENm001_1 263613 75 - 1575427 GA---GG---TCAGTCCCCTCAGCAGCCACCAAAC------TACCGAATGCAGCAACAA---TAAATCAAAGACTGAGCCGGGTGTTTCA +s galago.ENm001_1 291015 78 - 1783853 GA---GG---TTAGTCCTCTCAGCAGCCACCAAAC------TACCGAATGCAGCAACAACAGTAAATCCAAGCCTGAGTCGGGTGTTTCA +s rn3.chr4 143036530 75 - 187371129 GA---AG---CCAGTCCTCTCAGCAGCCATCAAAC------TACCGAATGCAGCAACAG---TAAATCCAAGACTGAGTTGGGTGTCTCA +s mm6.chr6 131828799 75 - 150245815 GA---AG---CCAGTCCTCCCAGCAGCCGTCAAAC------TGCCGAATGCAGCAACAG---TAAATCAAAGACTGAGATGGGTGTCTCA +s rabbit.ENm001_1 186323 75 - 1889755 GA---GG---TCAGTCCTCTCAGCAGCCATCAAGC------TACCGAATGCAGCACCAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s cow.ENm001_1 443854 75 - 2061479 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------AACCGAATGCAGCAACAG---TAAATCAAAGACTGAGTTGGGTGTTTCA +s canFam1.chr14 4465034 75 - 63549963 GA---GC---CCAGTCCTCTCAGCAGCCACCAAGC------GGCCGAATGCAGCAACAG---GCAATCCAAGACGGAGTTGGGTGTTTCG +s rfbat.ENm001_1 305023 75 - 1737318 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACCGAATGCAACGACAG---TAAATCCAAGACTGAGTCGGGTGTTTCA +s hedgehog.ENm001_1 244247 75 - 2136267 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACCGAGTGCAGCAACAA---TAAATCTAAGACCGAGTTGGGTGTTTCA +s shrew.ENm001_27 13053 81 - 34682 GA---GG---TCAGTCCTCTCAGCAGCCATCAAACCACCACTACCGAGTGCAGCAACAA---TAAATCAAAGACTGAGTTGGGTGTATCA +s armadillo.ENm001_1 188384 75 - 1656816 GA---GG---TCAGTCCTGTCAGCAGCCATCAAAC------TACAAAACGCAGCACCAG---TACGTCAAAGACTGAGTTGAGTGTTTCA +s elephant.ENm001_1 103181 75 - 1533827 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TACAGAATGCAGCAATAG---TAAATTAAAGACCGAGTTGGGTGTTTCA +s tenrec.ENm001_138 5001 75 - 6927 GA---GG---TCAGTCCTCTCAGCAGCCATCAAAC------TATGGAACGCAGCAACAG---GACGCTAAAGACCGAGTTGGGCGTTTCA +s monDom1.scaffold_13572 3408828 75 + 5827465 GA---TG---TCTGTCCTCTCAGCAGCAGTCCAAC------TGTAGAATGCAGTATCAG---CAAACCAAAAATTGAGTTGGGCGTTTCA +s platypus.ENm001_1 208072 75 - 1321799 GA---GG---TCTGTCCTCTTAGCAGCAATCCAAC------TCTTGAATGCAGCAACAA---CACACCGAAACCCGAGTCGGGGGTTTCG +s galGal2.chr1 21521097 72 + 188239860 GA---TGGAATCCGTCCTCTCAGCAGCAGTCGAAC------TGTAGAA------AGCAG---CAAATCAAAGACAGAGCTGGGTGGTTCA +s xenTro1.scaffold_17 1540905 72 - 3981052 GACATGG---CCTGTCCTCTAAGCAGCAGAAAGAA------TTTAGAATCCAGCATTCA---GAAACCAAAAGCGGAACCTGG------G +s tetNig1.chr13 1658653 71 - 12408495 TA---TT---CCAGTGC----ATCAACTTGCAAAC------TACAGTATTCAGCCAGAG---TATGCTCATGAAGTATTTGACTGCCTCA + +a score=-12248.0 +s hg17.chr9 9641745 4 - 138429268 CTAG +s baboon.ENr232_1 577390 4 - 695787 CTAG +s marmoset.ENr232_1 520982 4 - 681407 CTAG +s galago.ENr232_1 341981 4 - 445664 TTAG +s rn3.chr3 161639260 4 - 170969371 CTAG +s mm6.chr2 151547720 4 - 181764313 CTAG +s rabbit.ENr232_18 5089 4 - 6581 CTAG +s cow.ENr232_1 436915 4 - 749201 CTAG +s canFam1.chr9 47277506 4 + 53642819 ATAG +s rfbat.ENr232_1 411482 4 - 445008 CTAG +s armadillo.ENr232_1 409108 4 - 420596 TTAG +s monDom1.scaffold_12698 353949 4 + 3488899 TTAG +s galGal2.chr17 5424949 4 + 10632206 TTAA +s tetNig1.chr4 4165038 4 + 6212533 CCAG + +a score=242807.0 +s hg17.chr9 9641707 38 - 138429268 CTCCTTCTGCCTCTCTACCTCCTGATATTGCTGATGGC +s baboon.ENr232_1 577352 38 - 695787 CTCCTTCTGCCTCTCTACCTCCTGATACTGCTGATGGC +s marmoset.ENr232_1 520944 38 - 681407 CTCCTTCTGCCTCTCTACCTCCTGATATTGCTGATGGC +s galago.ENr232_1 341943 38 - 445664 CTCCTTTTGCCTCTCTACCTCCTGATATTGCTGATGGC +s rn3.chr3 161639222 38 - 170969371 CTCCTGTTGCCCCTCTACCTACTGATTTTGCTGATGGC +s mm6.chr2 151547682 38 - 181764313 CTCCTGTTGCCTCTCTACCTACTGATATTGCTGATGGC +s rabbit.ENr232_18 5051 38 - 6581 CTCCTGCTGCCTCTCTACCTCCTGATACTGCTGATGGC +s cow.ENr232_1 436877 38 - 749201 CTCCTTTTGCCTCTGTACCTCTTGATATTGCTGATGGC +s canFam1.chr9 47277468 38 + 53642819 CTCCTGTTGCCTCTCTACCTCCTGATATTGCTGATGGC +s rfbat.ENr232_1 411444 38 - 445008 CTCCTTTTGCCTCTCTATCTCCTGATATTGCTGATGGC +s armadillo.ENr232_1 409070 38 - 420596 CTCCTTTTGCCTCTCTACCTCCTGATATTGCTGATGGC +s monDom1.scaffold_12698 353911 38 + 3488899 CTTATGTTACCACTCTATCTCCAGATTCTGCTGATGGC +s galGal2.chr17 5424911 38 + 10632206 TTGCTGTTACCTCTCTACCTCCAGATCATGTTTATGGT +s tetNig1.chr4 4164996 37 + 6212533 CTACTGCTCCCGCTTTACCTCTTTATCCTGCTCTTG-C +s danRer2.chr21 1735685 37 + 40848751 CTTCTGCTTCCTCTGTATCTCTACATCCTCCTGCTG-C + +a score=462361.0 +s hg17.chr9 9641644 63 - 138429268 TGGATTTTGGGGTCCATCAGCACTGTGTCCCTCCTGGAAGCATACACTACACAGATAGACAAT +s panTro1.chr11_random 6903869 63 + 53199993 tagatTTGGGAGTCGATCTGCACTGTGTCCCTCCCAGAATTGTACACTACACAGATAGTGAAT +s baboon.ENr232_1 577289 63 - 695787 TGGATTTTGGGGTCCATCAGCACTGTGTCCCTCCTGGAAGCATACACTACACAGATAGACAAT +s marmoset.ENr232_1 520881 63 - 681407 TGGATTTTGGGATCCATCAGCACTGTGTCCCTCCTGGAAGCATACACCACACAAATAGACAAT +s galago.ENr232_1 341880 63 - 445664 TGGATTTTGGGGTCCATCAGCACTGTGTCCCTCCTAGAAGCATATACTACACAGATAGACAAT +s rn3.chr3 161639159 63 - 170969371 TGGATTTTGGGGTCCATCAGCACTGTGTCGCTTCTGGAAGCATACACAACTCAGATAGACAAT +s mm6.chr2 151547619 63 - 181764313 TGGATTTTGGGGTCCATCAGCACTGTATCCCTTCTGGAAGCGTACACTACTCAGATAGACAAT +s rabbit.ENr232_18 4988 63 - 6581 TGGATCCTGGGCTCCATCAGCACCGTGTCCCTGCTCGAAGCGTACACCACGCAGATAGACAAT +s cow.ENr232_1 436814 63 - 749201 TGGATTTTGGGATCCATCAGCACCGTATCCCTCCTGGAAGCCTACACTACGCAGATAGACAAT +s canFam1.chr9 47277405 63 + 53642819 TGGATTTTGGGCTCTATCAGCATCGTGTCCCTCCTAGAAGCATACACGACACAGATAGACAAT +s rfbat.ENr232_1 411381 63 - 445008 TGGATTTTGGGGTCCATCAGCACGGTGTCCCTCCTAGAAGCATACACTACGCAGATAGACAAT +s armadillo.ENr232_1 409007 63 - 420596 TGGATTTTGGGGTCCATAAGCACTGTGTCCCTTCTAGAAGCATACACTACACAGATAGACAAT +s monDom1.scaffold_12698 353848 63 + 3488899 TGGATTCTAGGGTCTATCACTATAATCTCCCTACTGGAAGCTTACACCACCCAAATAGACAAT +s galGal2.chr17 5424848 63 + 10632206 TGGATTCTGGTGTCTGTGAGCTTAGTTTCTCTTTTGGAAGCTTACACAACCCAAATTGATAAT +s tetNig1.chr4 4164933 63 + 6212533 TGGATTGTTGGTTCCATCGCTCTGGTGGCCATGCTCGAAGCTTACACTGTTCAAATAGACAAC +s danRer2.chr21 1735622 63 + 40848751 TGGGTGGTGGGATCCATCTCTATGGTGGCCATGTTGGAGGCCTATACGTCGCAGATTGACAAC + +a score=8255688.0 +s hg17.chr9 9640546 1098 - 138429268 AACACTTGTGTCATCTTGGGCTTGGCTGGAGGTGTTATCATTTATATCATGAAGCACTCGTTGAGCGTGGGGGAGGTGATCGAAGTCCTGGAAGTCCTTCTGATCTTCGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTCACCCCTGGTGAGGCACTGCTGGTATTGGGTGGCATTAGCTTTGTCCTCAACCAGCTCATCAAGCGCTCTCTGACACTGGT---GGAAAGTCAGGGGGACCCAGTGGACTTCTTCCTGCTGGTGGTGGTAGTAGGGATGGTACTCATGGGCATTTTCTTCAGCACTCTGTTTGTCTTCATGGACTCAGGCACCTGGGCCTCCTCCATCTTCTTCCACCTCATGACCTGTGTGCTGAGCCTTGGTGTGGTCCTACCCTGGCTGCACCGGCTCAT-CCGCAGGAATCCCCTGCTCTGGCTTCTTCAGTTTCTCTTCCAGACAGACACCCGCATCTACCTCCTAGCCTATTGGTCTCTGCTGGCCACCTTGGCCTGCCTGGTGGTGCTGTACCAGAATGCCAAGCGGTCATCTTCCGAGTCCAAGAAGCACCAGGCCCCCACCATCGCCCGAAAGTATTTCCACCTCATTGTGGTAGCCACCTACATCCCAGGTATCATCTTTGACCGGCCACTGCTCTATGTAGCCGCCACTGTATGCCTGGCGGTCTTCATCTTCCTGGAGTATGTGCGCTACTTCCGCATCAAGCCTTTGGGTCACACTCTACGGAGCTTCCTGTCCCTTTTTCTGGATGAACGAGACAGTGGACCACTCATTCTGACACACATCTACCTGCTCCTGGGCATGTCTCTTCCCATCTGGCTGATCCCCAGACCCTGCACACAGAAGGGTAGCCTGGGAGGAGCCAGGGCCCTCGTCCCCTATGCCGGTGTCCTGGCTGTGGGTGTGGGTGATACTGTGGCCTCCATCTTCGGTAGCACCATGGGGGAGATCCGCTGGCCTGGAACCAAAAAGACTTTTGAGGGGACCATGACATCTATATTTGCGCAGATCATTTCTGTAGCTCTGATCTTAATCTTTGACAGTGGAGTGGACCTAAACTACAGTTATGCT +s panTro1.chr11_random 6900036 1097 + 53199993 AACACTTGTGTCATCTTGGGCTTGGCTGGAGGTGTTATCATTTATATCATGAAGCTCTAGG-GAGCGTGGGGGAGGTGATCGAAGTCCTGGAAGGCATTCTGATCTTCGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGTTGCTTCACCCCTGGCGAGGCACTGCTGGTATTGGGTGGCATTAGCTTTGTCCTCAACCAGCTCATCAAGCGCTCTCTGACACTGGT---GGAAAGTCAGGGGGACCCAGTGGACTTCTTCCTGCTGGTGGTGGTAGTAGGGATGGTACTCATGGGCATCTTCTTCAGCACTCTGTTCGTCTTCATGGACTCAGGCACCTGGGCCTCCTCCATCTTCTTCCACCTCATGACCTGTGTGCTGAGCCTTGGTGTGGTCCTACCCTGGCTGCACCGGCTCAT-CCGCAGGAATCCCCTGCTCTGGCTTCTTCAGTTTCTCTTCCAGACAGACACCCGCATCTACCTCCTAGCCTATTGGTCTCTGCTGGCCACCTTGGCCTGCCTGGTGGTGCTGTACCAGAATGCCAAGCGGTCATCTTCCGAGTCCAAGAAGCACCAGGCCCCCACCATCGCCCGAAAGTATTTCCACCTCATTGTGGTAGCCACCTACATCCCAGGTATCATCTTTGACCGGCCACTGCTCTATGTAGCCGCCACTGTATGCCTGGCGGTCTTCATCTTCCTGGAGTATGTGCGCTACTTCCGCATCAAGCCCTTGGGTCACACTCTACGGAGCTTCCTGTCCCTTTTTCTGGATGAACGAGACAGTGGACCACTCATTCTGACACACATCTACCTGCTCCTGGGCATGTCTCTTCCCATCTGGCTGATCCCCAGACCCTGCACACAGAAGGGTAGCCTGGGAGGAGCCAGGGCCCTCGTCCCCTATGCCGGTGTCCTGGCTGTGGGTGTGGGTGATACTGTGGCCTCCATCTTCGGTAGCACCATGGGGGAGATCCGCTGGCCTGGAACCAAAAAGACTTTTGAGGGGACCATGACATCTATATTTGCGCAGATCATTTCTGTAGCTCTGATCTTAATCTTTGACAGTGGAGTGGACCTAAACTACAGTTATGCT +s baboon.ENr232_1 576191 1098 - 695787 AACACTTGTGTCATCTTGGGCTTGGCTGGAGGTGTTATCATTTATATCATGAAGCACTCGCTGAGCGTGGGGGAGGTGATCGAAGTCCTGGAAGTCCTGCTGATCTTCGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTCACCCCTGGTGAGGCACTGCTGGTATTGGGTGGCATTAGCTTTGTCCTCAACCAGCTCATCAAGCGCTCTCTGACACTGGT---AGAAAGTCAGGGGGACCCAGTGGACTTCTTCCTGCTGGTGGTGGTAGTAGGGATGGTACTCATGGGCATCTTTTTCAGCACTCTCTTTGTCTTCATGGACTCAGGCACCTGGGCCTCCTCCATCTTCTTCCACCTCATGACCTGTGTGCTGAGCCTTGGTGTGGTCCTTCCCTGGCTGCACCGGCTCAT-CCGCAGGAACCCCCTGCTCTGGCTTCTGCAGTTCCTTTTCCAGACAGACACCCGTATCTACCTCCTAGCCTATTGGTCTCTGCTGGCCACCTTGGCCTGCCTGGTGGTGCTGTACCAGAATGCCAAGCGGTCATCTTCCGAGTCCAAGAAGCACCAGGCCCCCACCATCGCCCGAAAGTATTTCCACCTCATTGTGGTAGCCACCTACATCCCAGGTATCATCTTTGACCGGCCACTGCTCTATGTAGCTGCCACTGTATGTCTGGCGGTCTTCATCTTCCTGGAGTATGTGCGCTACTTCCGCATCAAGCCCTTGGGTCACACTCTACGGAGCCTCCTGTCCCTTTTTCTGGATGAACGAGACAGTGGACCACTCATTCTGACACACATCTACCTGCTCCTGGGCATGTCTCTTCCCATCTGGCTGATCCCCAGACCCTGCACACAGAAGGGTAGCCTGGGGGGAGCCAGGGCCCTCGTCCCCTATGCTGGTGTCCTGGCTGTGGGTGTGGGTGATACTGTGGCCTCCATCTTTGGTAGCACCATGGGGGAGATCCGCTGGCCTGGAACCAAAAAGACTTTTGAGGGGACCATGACATCTATATTTGCGCAGATCATTTCCGTAGCTCTGATCTTAATCTTTGACAGTGGAGTGGACCTAAACTACAGTTACGCT +s marmoset.ENr232_1 519783 1098 - 681407 AACACTTGTGTCATCTTGGGCTTGGCTGGAGGTGTTATCATTTATATCATGAAGCACTCGCTGAGCGTCGGGGAGGTGATCGAAGTCCTGGAAGTCCTGCTGATCTTCGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTCACCCCTGGCGAAGCACTGCTGGTATTGGGTGGCATTAGCTTTGTCCTCAACCAGCTCATCAAGCGCTCTCTGACACTGGT---GGAAAGCCAGGGGGATCCAGTGGACTTCTTCCTGCTGGTGGTGGTAGTAGGGATGGTACTTATGGGCATCTTCTTCAGCACTCTCTTTGTTTTCATGGACTCAGGCACCTGGGCCTCCTCTATCTTCTTCCACCTCATGACTTGTGTGCTGGGCCTTGGTGTGGTCCTGCCCTGGCTGCACCGGCTCAT-CCGCAGGAACCCCCTGCTCTGGCTGCTTCAGTTCCTCTTCCAAACAGATACCCGGATCTACCTCCTAGCCTATTGGTCTCTGCTGGCCACCTTGGCCTGCCTGGTAGTGCTATATCAGAATGCCAAGCGGTCATCATCTGAGTCCAAGAAGCACCAGGCCCCCACCATTGCCCGAAAGTATTTCCACCTCATTGTGGTAGCCACCTACATCCCAGGTATCATCTTTGACCGGCCACTGCTCTACGTAGCCGCCACTGTATGTCTGGCAGTCTTCATCTTCCTCGAGTATGTGCGCTACTTCCGCATCAAGCCCCTGGGTCACACTCTGCGAAGCCTCCTGTCCCTTTTTCTGGATGAACGAGACAGTGGACCACTCATTCTGACACACATCTACCTGCTGCTGGGCATGTCTCTTCCCATCTGGCTGATCCCCAGACCCTGCACACAGAAGGGTAGCCTGGGGGGAGCCAGGGCCCTCGTCCCCTATGCTGGTGTCCTGGCCGTGGGTGTGGGTGATACTGTGGCCTCCATCTTCGGTAGCACCATGGGGGAGATCCGCTGGCCTGGAACCAAAAAGACTTTTGAGGGGACCATGACATCTATATTTGCACAGATCATTTCTGTAGCTCTGATCTTAATCTTTGACAGTGGAGTGGACCTTAACTACAGTTACGCT +s galago.ENr232_1 340785 1095 - 445664 AACACTTGTGTTATCTCGGGTTTGGCCGGAGGTGTTATCATTTATATCATGAAACACTCCTTGAGTGTGGGTGAAGTGATTGAGGTCCTAGAAGTCCTGCTAATCTTTGTTTATCTCAACATGATCCTGTTGTACCTGCTGCCTCGCTGCTTCACCCCTGGAGAGGCGCTGCTAGTATTGGGTGGCATTAGTTTTGTCCTCAACCAGCTCATTAAGCGCTCTCTGACAGTGGT---GGAAAGCCAGGGAGACCCAGTGGATTTCTTCCTGCTGGTGGTGGTGGTAGGGATGGTGCTTATGGGCGTCTTCTTCAGCACTCTCTTTGTCTTCATGGACTCAGGGACCTGGGCCTCCTCCATCTTCTTCCACCTCATGACCTGTGTGCTGGGCCTTGGTGTGGTCTTACCCTGGCTGCACCGGCTCAT-CCGCAGGAACCCCCTGCTTTGGCTTCTACAGTTCCTCTTCCAGACAGACACTCGCATCTACCTCCTAGCCTATTGGTCTCTACTGGCCACCTTGGCCTGCCTGGTGGTGCTCTACCAGAATGCCAAGCGGTCATCT---GAGTCCAAGAAACACCAGGCCCCCACCATAGCCCGAAAGTATTTCCACTTCATTGTTGTAGCCACCTACATCCCAGGTATCATCTTTGACCGGCCACTGCTGTATGTGGCTGCCACTGTATGTCTAGCAGTCTTCATCTTCCTGGAGTATGTGCGCTACTTCCGCATCAAGCCTCTGGGTCACACTCTGAGGAACCTCCTGTCCCTCTTCCTGGATGAACGAGACAGCGGACCACTCATTCTGACACACATCTACCTGCTCCTGGGCATGTCTCTTCCTGTTTGGCTGGTCCCTAGACCCTGCACACAGAAGGGTAGCTTCGGGGGAGCCAGGGCCCTAGTCCCCTATGCCGGTGTCCTGGCTGTAGGTGTGGGTGATACTGTGGCCTCCATCTTTGGCAGCACCATGGGGGAGATTCGCTGGCCTGGAACCAAAAAGACTTTTGAGGGGACTATGACTTCTATATTTGCACAGATCATTTCTGTAGCTTTAATCCTAATCTTTGACAGTGGAGTAGACCTAAACTACAGTTACACT +s rn3.chr3 161638067 1092 - 170969371 AATACTTGTGCCATCTCGGGTTTGGCCGGAGGTATTATCATTTATATTATGAAGCACTCGCTCAGTGTGGGCGAGGTGATCGAGGTCCTGGAAGTCCTGCTAATATTCGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTCACTCCTGGGGAGGCACTGCTGGTATTGGGTGGCATTAGCTTCGTCCTCAACCAGCTCATCAAGCGCTCTCTGACTG---------AAAGCCAGGGGGACCCAGTGGACTTCTTCCTGTTGGTGGTGGTGGTGGGGATGGTGCTCATGGGTGTCTTTTTCAGCACCCTCTTTGTCTTCATGGATTCGGGCACCTGGGCCTCTTCTATCTTCTTCCACCTCATGACCTGTGTGCTGGGCCTTGGTGTGGTTCTGCCCTGGCTGCACTGGCTCAT-TCGTAGGAACCCCCTGCTCTGGCTTCTTCAGTTCCTCTTCTACACAGAAACTCGCATCTACCTCCTAGCCTATTGGTCCTTGCTGGCCACCATGGCCTGCCTGGTGGTGCTGTACCAGAATGCCAAGCGGTCATCTTCTGAGTCCAAGAAGCACAAGGCTCCTACCATTACCAGAAAGTATTTCCACTTCATTGTGGTGGCCACTTACATCCCCGGTATCATCTTTGACCGGCCACTGCTGTATGTGGCCGCCACCGTGTGTCTGGCCGTCTTCATCTTCCTGGAGTATGTGCGCTATTTCAGAATCAAGCCCCTGGGTCACACTCTGCGCAGCCTTCTGTCCCTCTTCCTGGATGAACGGGACAGCGGGCCCCTCATCCTGACGCACATCTACCTGCTTCTGGGCATGTCTCTTCCCATTTGGCTGATCCCCAGACCCTGTGCACAGAAGGGCAGCCTCGGAGGAGCAAGAGCCCTGGTCCCCTATGCTGGGGTCCTGGCTGTGGGTGTGGGCGATACTGTGGCCTCCATATTTGGCAGCACCATGGGGGAGATCCGCTGGCCTGGAACTAAGAAAACATTCGAGGGAACTATGACATCTATATTTGCACAAATCATCTCTGTGGCTCTGATCCTAATCTTTGACAGTGGAGTAGACCTGAACTACAGCTATGCT +s mm6.chr2 151546527 1092 - 181764313 AATACTTGTGCCATCTCTGGTTTGGCTGGAGGCGTTATCATTTATATTATGAGGCACTCGCTCAGTGTAGGCGAGGTGATCGAGGTCCTGGAAGTCCTGCTAATATTTGTTTATCTCAACATGATCCTGCTGTACCTGCTGCCCCGATGCTTCACTCCTGGGGAGGCACTGCTGGTATTGGGTGGCATTAGCTTCGTCCTTAACCAACTCATCAAGCGCTCTCTGACTG---------AAAGCCAGGGGGACCCAGTGGACTTCTTCCTGTTGGTGGTGGTGGTAGGGATGGTGCTCATGGGTGTCTTTTTCAGCACCCTCTTTGTCTTCATGGATTCAGGCACCTGGGCCTCTTCCATCTTCTTCCACCTCATGACCTGTGTGCTGGGCCTTGGTGTGGTTCTGCCCTGGCTGCACTGGCTCAT-TCGTAGGAACCCCCTGCTTTGGCTTCTTCAGTTCCTCTTCTACACTGAAACTCGCATCTACCTCCTTGCCTATTGGTCTTTGCTGGCCTCTGTGGCCTGCCTGGTGGTGCTGTACCAGAATGCTAAGCGGTCGTCTTCTGAGTCCAAGAAGCACAGGGCGCCTACCATTACAAGAAAGTATTTCCACTTCATTGTGGTAGCCACTTATATCCCGGGCATCATCTTTGACCGGCCACTGCTGTATGTGGCCGCCACTGTGTGCCTGGCAGTCTTCATCTTCCTGGAGTATGTGCGCTATTTCCGAATAAAGCCCTTGGGTCACACTCTGCGAAGCCTTCTGTCCCTCTTCCTGGATGAACGAGACAGTGGACCCCTTATCCTAACACACATCTACCTGCTTCTGGGCATGTCTCTTCCTATTTGGCTGATCCCCAGACCCTGTACACAGAAGGACAGCCTGGAAGGAGCAAGAGCCCTGGTCCCCTATGCTGGGGTCTTGGCTGTGGGTGTGGGTGATACTGTGGCCTCCATATTTGGCAGCACCATGGGAGAGATCCGCTGGCCTGGAACTAAGAAAACCTTCGAGGGGACTATGACATCTATATTTGCACAAATCATCTCTGTAGCTCTAATCTTAATCTTTGACAGTGGAGTAGACCTGAACTACAGTTATGCC +s rabbit.ENr232_18 3890 1098 - 6581 AACACGTGCGCCATCTCGGGCCTGGCGGGCAGCGTCATCCTGTACGTCATGCGGCACTCGCTGAGCGTGGGCGAGGTGATCGAGGTTCTGGAAGTCCTGCTCATCTTCGTGTACCTGAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTCACCCCCGGGGAGGCGCTGCTGGTGCTGGGGGGCTTCAGCTTCCTGCTCAACCAGCTCATCAAGCGCTCGCTGACCGTGGT---GGAGACGCAGGGGGACCCGGTGGACTGCTTCCTGCTCGTGGTGGTGGTGGGCATGGTGCTGCTGGGGGTCTTCTTCAGCACCCTCTTCGTCTTCATGGACTCGGGCACCTGGGCCTCGTCCATCTTCTTCCACCTCATGACCTGCGTGCTGGGCCTCGGCGTGGTCCTGCCCTGGCTGCACTGGCTCAC-CCGCAGGAACCCCCTGCTCTGGCTCCTGCAGTTCCTCTTCCAAACCGACACCCGCGTCTACCTCCTTGCCTACTGGTCGCTGCTGGCTGCCTTGGCCTGCCTGGTGGTGCTGTACCAGAACGCCAAGCGGGCCGCTTCCGAGTGCAAGAAGCACCAGGCCCCCACCATCGCGCGGAAGTATTTCCACTTCCTCGTGGTGGCCACCTACATCCCCGGCATCATCTTCGACCGGCCGCTGCTCTACGTGGCCGCCACCGTGTGCCTGGCGGTCTTCATCTTCCTGGAGTACGTGCGCTACTTCCGCATCAAGCCCCTGGGCCACCCGCTGCGCAGCCTGCTGGCGCTCTTCCTGGACGAGCGGGACAGCGGCCCGCTCATCCTCACGCACATCTACCTGCTCCTGGGCATGTCCCTTCCCATTTGGCTGGTCCCCAGGCCCTGCGCCCAGAAGGGCAGCCTGGGAGGAGCCAGGGCCTTGGTCCCCTATGCCGGCGTCCTGGCTGTGGGCGTGGGCGACACCGTGGCCTCCATCTTCGGCAGCACCATGGGCGAGATCCGCTGGCCTGGAACCAAGAAGACGTTCGAGGGCACCATGACGTCCATCTTCGCACAGATCATCTCTGTGGCGCTCATCTTGGTCTTCGACAGCGGGGTCGACCTGAACTGCGGCTACGCC +s cow.ENr232_1 435716 1098 - 749201 AACACCTGTGTCATCTCGGGCTTGGCTGGAGGCGTCATCATTTACATCATGAAGCACTCGCTGAGTGTCGGCGAGGTGATCGAGGTCCTGGAGGCCCTGCTGATCTTCGTGTACCTCAACATGATCCTGCTGTACCTGCTGCCTCGCTGCTTCACCCCCGGAGAGGCGCTGCTGGTCCTGGGTGGCATCAGCTTCATGCTCAACCAGCTCATCAAGCGCTCTCTCACTGTGGT---GGAAAGCCAGGGGGACCCCTTGGACTTCTTCCTGCTCGTGGTGGTGGTAGGCATGGTGCTCATGGGCATCTTCTTCAGCACCCTCTTTGTATTCATGGACTCGGGCACCTGGGCCTCTTCCATCTTCTTCCACCTCATGACCTGCGTCCTGGGCCTTGGCGTCGTCCTGCCCTGGCTGCACCGCCTCAT-CCGCAGGAACCCCCTGCTGTGGCTTTTTCAATTCCTCTTCCAGACAGAGACCCGAGTCTACCTCCTAGCTTATTGGTGTCTGCTGGCCACCGTGGCCTGCCTGGTGGTTCTGTACCAGAATGCCAAGCGGTCATCTTCTGAGTCCAAGAAGCACCAGGCCCCCACCATCACTCGAAAGTATTTCCACTTCATTGTGGTAGCCACCTACATCCCAGGTATCATTTTGGACCGGCCCCTGCTCTACGTGGCCGCCACCGTATGTCTGGCTGTCTTCATCTTCCTGGAGTATGTGCGCTACTTCCGCATTAAGCCCCTGGGCCATACCCTGCGAAGCCTTCTGTCCCTCTTCCTGGATGAACGAGACAGTGGGCCGCTCATCCTGACCCACATCTACCTGCTCCTAGGCATGTCTCTTCCCATCTGGTTAGTCCCCAGGCCCTGCACACAGAAGGGTAGCTTAGGAGGAGCCAGGGCCCTAGTGCCCTATGCAGGCGTCCTGGCCGTCGGTGTGGGTGACACTGTGGCCTCCATATTCGGCAGCACCATGGGGGAGATTCGCTGGCCTGGAACCAAAAAGACTTTTGAGGGAACCATGACATCTATATTTGCTCAGATCATTTCTGTAGCTCTGATCTTAATCTTTGACAGTGGAGTGGACCTGAACTACAGTTATGCT +s canFam1.chr9 47276307 1098 + 53642819 AACACTTGTGTCATCTCAGGCTTGGCTGGAGGTGTCATCATTTATATCATGAAGCACTCACTGAGTGTGGGCGAGGTGATCGAGGTCCTGGAGGTCCTGCTGATCTTCGTCTACCTCAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTTACCCCTGGGGAGGCACTGCTTGTATTAGGTGGCATCAGCTTCATGCTCAACCAGCTCATCAAGCGTTCTCTGACTGTGGT---GGAGAGCCAGGGCGACCCAGTGGATTTCTTCCTGCTGGTGGTGGTAGTAGGGATGGTGCTTATGGGCGTCTTCTTCAGCACACTCTTTGTCTTCATGGACTCAGGTACCTGGGCTTCCTCCATCTTCTTCCACCTTATGACTTGTGTGCTGGGCCTTGGCGTGGTCCTTCCCTGGCTGCACCGGCTTAT-CCGCAAGAACCCCCTGCTCTGGCTTCTTCAATTCCTCTTCCAGAAAGAGACCCGCATCTACCTCCTGGTCTACTGGTCTCTGCTGGCCACCTTAGCCTGCCTGGTGGTGCTTTACCAGAATGCCAAGCGGTCATCTTCTGAGTCTAAGAAGCACCAGGCCCCCACCATTGCCCGAAAGTATTTCCACTTCATTGTGGTGGCCACCTACATCCCCGGTATCATCCTTGACCGGACACTGCTCTATGTAGCTGCCACCATATGCCTAACAGTCTTTATCTTCCTAGAATATGTGCGCTATTTCCGCATCAAGCCCCTGGGCCACACTCTGAGGAGCCTCCTGTCCCTTTTCTTAGATGAACGAGACAGTGGACCACTCATCCTGACACATATCTACCTGCTCTTGGGCATGTCTCTTCCAATTTGGCTGGTTCCCAGGCCCTGCACACAGAAGGGCAACTTGGGGGGAGCAAGAGCCCTAGTCCCTTATGCAGGAGTCCTGTCTGTGGGTGTGGGGGACACTGTGGCCTCCATTTTTGGCAGCACAATGGGGGAAATCCACTGGCCTGGAACCAAAAAGACCTTTGAGGGGACCATGACCTCTATATTTGCCCAGATCATTTCTGTAGCTCTGATCTTAATCTTTGATAGTGGAGTGGACCTAAACTACAGTTATGTT +s rfbat.ENr232_1 410283 1098 - 445008 AACACTTGTGTCATCTTGAGCTTGGCGGGAGGTGTCATCATTTATATCATGAAGCACTCACTGAGCGTGGGTGAGGTGATCGAGGTCCTGGAGGTCCTGCTGATCTTTGTCTACCTCAACATGATCCTGCTGTACCTGCTGCCCCGCTGCTTCACCCCTGGGGAGGCACTGCTGGTGTTGAGCGGCATCAGCTTCATGCTCAACCAGCTCATCAAGCGCTCTCTGACAGTGGT---GGAAAGCCAGGGGGACCCCGTGGACTTCTTCCTGCTGGTGGTGGTGGTCGGCATGGTGCTCATGGGCATCTTCTTCAGCATCCTCTTTGTCTTCATGGACTCAGGTACCTGGGCCTCCTCCATCTTCTTCCACCTGATGACCTGTGTGCTGGGCCTTGGCGTGGTCGTGCCCTGGCTGCAGCGGCTCAT-CCACAGGAACCCCCTGCTCTGGCTTCTTCAATTCCTCTTCCAGACGGAAACCCGCCTCTACCTCCTAGCCTACTGGTCCCTACTGGCCGCTTTTGCCTGCCTGGTAGTGCTGTACCAGAATGCCAAGCGATCATCTTCCGAGTCCAAGAAGCACCAGGCCCCCATCATTGCCCGGAAGTATTTCCACTTCATTGTGGTAGCCACCTACATACCAGGTATCATCTTTGACCGGCCTCTGCTCTACGTGGCTGCCACTGTATGTCTGGCAGTCTTCGTCTTCCTGGAGTATGTGCGCTATTTCCGCATTAAGCCTCTGGGCCACACTCTGCGGAGCCTCCTGTGCCTCTTCCTTGATGAACGAGACAGCGGACCACTCATCCTGACACACATCTACCTGCTCCTGGGCATGTCTCTTCCCATTTGGCTAGTCCCCAGACCCTGCACGCAGAAGGATAGCCTGGGTGGGGCGAGGGCCCTAGTCCCCTATGCCGGTGTCCTGGCTGTGGGTGTGGGCGACACGGTGGCCTCCATCTTTGGCAGCACCATGGGGGAGATCCGCTGGCCTGGAACCAAAAAGACTTTCGAGGGGACCATGACATCTATATTTGCCCAGATCATTTCTGTAGCTCTGATCTTAATCTTTGACAGTGGAGTGGACCTAAACCACAGTTACGCT +s armadillo.ENr232_1 407912 1095 - 420596 AACACTTGTGTCATCTCAGGCTTGGCTGGAGGCATCATCATTTACATCATGAAGCACTCACTTAGCGTCGGCGAGGTGATTGAGGTCCTGGAGGTCCTACTGATCTTTGTCTACCTCAACATGATCCTGCTGTACCTGCTACCCCGCTGCTTCACCCCTGGGGAGGCACTGCTGGTATTGGGTGGCATCAGCTTTGTGCTCAACCAGCTCATCAAGCGTTCTCTCACTGTGGT---AGAGAGCCAGGGGGATCCCGTGGACTTCTTCCTGCTGGTGGTGGTGGTAGGGATGGTGCTGATGGGCATCTTCTTCAGCACTCTCTTTGTCTTCATGGACTCAGGCACCTGGGCCTCTTCCATCTTCTTTCACCTAATGACTTGCGTCCTGGGCCTCGGGGTGGTCCTGCCTTGGCTGCACCGGCTCAT-CCGCAGGAACCCCCTGCACTGGCTCCTTCAATTCATCTTCCAGACAGACACCCGCATCTATCTCTTGGTCTACTGGTCTCTGCTGGCCACCTTGGCCTGCCTGGTGGTGCTGTACCAGAATGCCAAGCGGTCATCT---GAGTCCAAGAAGCACCAGGCTCCCACCATCACACGGAAGTATTTCCACTTCATTGTGGTTGCCACCTATATCCCAGGTATCATCTTTGACCGGCCACTGCTCTACGTGGCTGCCACCGTATGCCTGGCAGTCTTCGTTTTCCTGGAGTATGTGCGCTACTTCCGCATCAAACCTCTGGGCCACACTCTGCGGAGCCTCCTTTCTCTCTTCCTAGATGAACGAGACAGTGGACCGCTCATCCTGACACACATCTACCTGCTCCTGGGCATGTCTCTTCCCATTTGGCTGGTCCCCAGACCTTGTACCCAGAAGGGTAGCCTGGGGGGAGCACGGGCCCTAGTCCCCTATGCTGGTGTCTTGGCTGTGGGTGTGGGCGACACTGTGGCCTCTGTCTTTGGCAGCACAATGGGAGAAATCCGCTGGCCCGGAACCAAAAAGACTTTCGAGGGAACCATGACTTCTATATTTGCCCAGATCATTTCTGTAGCTCTCATCTTAATCTTTGACAGTGGAGTGGACCTAAACTATAGTTATGCT +s monDom1.scaffold_12698 352750 1098 + 3488899 AACACTTGTGTCATTTCTGGCATGGCTGGAAGTGTCATCATCTATATCATGAAACATTCCTTGAGTGTGGCAGAGGTCATAGAGGTCCTGGAGGTCCTGCTGATCTTTGTCTATCTCAACATGATCCTACTGTACCTGCTACCCAGATGCTTTACCCCAGGGGAGGCATTGCTTATTCTAGGGGGCATCAGTTTTGCCCTCAACCAGCTCATCAAACGATCCCTGAATGTTAT---CCAAGGTCGAGGAGACCCAGTGGATTTCTTTCTCCTGGTGGTAGTAGTAGGGATGGTTATCATGGGCATCTTCTTCAGCATGTTTTTTGCCTTCATGGACTCTGGAACCTGGACATCTTCTCTTTTCTTTCACTTAATGACAGGTGTGCTGGGCCTTGGTGTCATCATGCCCTGGTTGTATCACCTAAT-CCGGGAGAATCCCTTGCTCTGGCTTTTCCAATTCCTGTTCCAGACAGACACTCGTATCTACCTCCTTATCTATTGGTCACTGCTTGCTGCTTCAGCTTGCATAGTTGTGATGTACCAAAATGCTAAGAGGTTGTCTTCTGAATCAAAGAAACATCAGGCCTCTACAGTTACCCGGAAGTATTTCCACTTCATCATAGTGGCTACCTATGTACCAGGACTCATATATGACCGACTATTACTATATGTTGCAGCTGTGGTCTGCCTAGCTGTCTTTATCATCCTTGAGTATATTCGCCTCTTCCGAATTAAGCCCCTAGGCCAGACCCTAAGGAACTTGCTATCTCTCTTTCTGGATGAAAGGGACAGTGGCCCCCTCATCCTGACTCACATTTACCTGCTGCTGGGCATGTCTCTCCCTCTCTGGCTATTCCCAAGACCTTGTGCTCCAAAGGGTAGCCTGGGAAGTGTTGGGGCTCTGGTCCCTTATGCAGGAGTGCTGGCTGTGGGAGTAGGTGACACTATTGCTTCCATTTTTGGCAGTACAGTGGGAGAGATTCATTGGCCAGGGACTGTAAAAACTTTTGAGGGGACAATGTCTTCCATATTTGCTCAAATCATTTCTGTAGCTTTAATCTTAATCTTTGACAGTAAGGTAGACCTTAACTCCAGCTATGCT +s galGal2.chr17 5423753 1095 + 10632206 AACACCTGCATACTCAGTGGTGTTGCTGGCAGTATAATTATCTATACCATGAAGCACTCTTTGACTGTTTCAGAAGTGATAGAGGTCCTAGAAGTGCTGCTAATTTTTGTCTACCTCAGTATGATCTTGCTCTACCTGCTGCCTCGGTGTTTTACTCCTGGAGAAGCATTGCTAGTTCTCGGAGGTATAAGTTTTGTTCTCAATCAGCTCATTAAACGCTCACTGAATGTAAT---CGAGGGCAGAGGTGAACCCATAGACTTCTTCCTTCTGGTGGCAGTTATTGGAGTTGTTATCCTTGGGCTTTTTTTCACTGTTCTCTTCATTTTCATGGATTCGGGTACGTGGATCTCCTCCATGTTTTTCCACATGATGACAGCAGTGCTAGGCTTAGGGGTCATCATGCCTTGGCTTTACCGACTGAT-CCGGAGGAACCCTTTGTTTTGGCTGCTCCAGTTTCTGTTTCAGACACAGACGAGGGTTTACCTTCTCATATATTGGACTTTATTGGCTGCTTCAGCGTGTGGCATAGTTTTCTACCAGAATGCCAAGAGATCGTCC---GAATCTAAAAAACACCAGGCCTCAACCATAACCAGGAAGTATTTCCATTTCATTGTTGTAGCAACTTATGTTCCTGGACTAATTTATGACCGCCAGCTTCTCCATGTTGCTGCAGTCCTGTGTCTGGCAGTGTTCATATTCTTAGAGTACATTCGGTACTTCAGGATCAAACCGTTTGGCCAAACTCTTCGCTATTTGCTGTCTCTCTTCTTGGATGAAAGAGACAGTGGGCCTCTAATCTTGACTCACATTTATCTTCTTCTTGGCATGTCCCTCCCAGTGTGGTTGTTCCCCAGATCCTGTGCCCCTAAAGGTGCCTTGTCTGGGGCAGGAGCACTGGTGCCCTATGCTGGGGTGCTTGCAGTAGGGGTAGGAGACACCATGGCCTCTGTTTTTGGCAGTACCATGGGGGAAATCAAATGGCCGGGCACAAAGAAGACCTTTGAAGGGACAATGACAGCAATTTTTGCTCAGATCATTGCTGTGGCTCTTATTCTGATCTTTGACAGCAGCGTGAACCTGAACTCCAGCTATGCC +s tetNig1.chr4 4163838 1095 + 6212533 AACACTTGCGTTATTGCAGGCATGGCCGCCAGTGCGATTCTCTACACGACAAAACAAACGTTAACCGTGTCTGAGGTCATCGAAGTTTTGGAGGTGTTGTTGATCTTCGTTTATCTCAGCCTGATTGTGCTCTACCTGCTGCCTCGCTGCTTCACACCCGGAGAAGCACTTCTTATCATTGGTGGAATCAGTTTCATTGTCAACCAGCTCATCAAGCGCTCACTGAACTTGAC---AGAGGTCAAAGGTGATCCGGTCAATTACTTCCTGCCGGTGGTGGTGGTGGGCTCCTTGTTACTGGGCGTTTTCTTCACTCTGCTTTTTTGCTTCATGGAATCAGAGACCTGGGTGTCGTCGGTTTTTTTCCATATGATGACAGCTGTTCTCAGTCTGGGAATTCTGCTGCCGTGGCTCTCCCTGTTCAT-CGGCAGACACCCCATCATGTGGCTACTGGACTTTGTCACGTTCACTGACATAAGACTCTCTCTGCTGGCGTACTGGGTCTTCCTTGCTGTCCTGGCCACCTGTGTTGTGTTGCATCAGAACTACCAACGCCAGTCT---GGGTCCAAGAAGCACCAGGCCTCCACTGTTGTCAGGAAGTACTTCCATGTCATTGTTGTGGCCACGTACGTTCCAGGTCTAATAAACGACCGGCACCTGCTCCACGTGGCATCTGTTGGCTGCCTGGCAGCCTTCTTGTTCCTGGAGTATGTGCGGTACTTTCGGATCAGACCGCTGGGCCAGGTGCTCAGGCAGGTTCTTACATTGTTCCTGGACGAGCGGGACTCTGGGCCTCTTATCCTGACCCACATCTACCTTCTGTTGGGGATGTCTCTTCCCATATGGCTGTTCCCCGGACCATGTGCCCCCAAAGGAGTACTTCCTGGTGCCGGTGGCCTGGTGCCATATGCTGGTGTCCTGGCTGTTGGGGTAGGAGACACTGTGGCATCTGTGTTCGGCAGCACCATGGGAGAGATTCGTTGGCCTGGTACTAAGAAAACGGTGGAGGGGACTGCAACGTCTGTGTTTGCCCAGATCATCGCTGTGGCCGTCTTTCTAATCTTTGATAGTGGCATCAATTTGAACTCAACCTACTCC +s danRer2.chr21 1734524 1098 + 40848751 AACACTTGTGTTATCGCCGGAATTGCTAGTAGTGCTATTCTGTACACCGTGAAGCAAACACTAACAGTGTCTGAGGTCATCGAAGTCTTGGAGGTGCTTCTGATTTTTGTGTATCTAAGTTTAATCCTGCTGTACCTCCTTCCACGTTGCTTCACCCCCGGCGAAGCCCTTCTGATCCTTGGCGGGATTAGTTTTATCATCAACCAGCTAATTAAGCGCTCTCTGGCTTCGTCTGGAAATGCAAACTCAGACCCGCTTCCGTATTTCCTCCCGGTAGCTGTTTTAGGGTTAGTGCTGTTGGGAATATTCTTCGCCGTGCTTTTTATATTCATGGAATCTGAAACCTGGTCAGCGTCGCTCTTCTTCCATACCATGACTGCGGTTTTGGGATTGGGGTTATTGGTTCCTTGGCTATCTCTACTCACGCAGCA-CCATCCAATCACTTGGTTGATGCATTTCATCACTGAATCAAACACTCGACTTTGGCTCATTGGGTTTTGGGCCGCTTTGGCGCTTCTAGCAGTTGCCGTTGTGATGCATCAAAATAGTCATCGATCTGCA---GGCAGCAAGAAGCATCAAGCATCAACGACAGTGCGGAAGTATTTCCACCTGCTCACCGTTTTAACCTTCGCTCCCGGACTCGCTCTGGATCGTCCTTTGCTGCATTTGTCTGCGGTTGTTTGCCTCTCTGCATTTTTGTTTCTCGAATATGTCCGCTATTTTCGCATTCGACCATTCGGGGCTCCGCTTCGACGTCTTCTCACCTTATTCCTTGATGAGAGAGATTCAGGACCACTTATTCTCACTCATATTTATCTTCTTCTTGGCGTTTCTCTTCCACTGTGGTTGACACCTGGGATGTGCACCCCAAAAGGAGGCCTAGGGGGCGCTAGTGGGCTAGTACCCTATGCTGGAGTCCTTGCTGTAGGGGTCGGGGACACAGTGGCATCCGTTTTCGGCAGCAACGTGGGTGAAATCCGCTGGCCTGGGACTAAGAAGACATTTGAGGGCACGGCGTCCTCTGTGTTCGCTCAGATTATCGCTGTGGTGGTTTTCCTCATCGCCGACAGCAGTATTAACCTGAACGCCAGCTACTCG + +a score=1671578.0 +s hg17.chr9 9640287 259 - 138429268 GGCCTTCTACGTCCAATACAAGTGGGACCGGCTGCTACAGCAGGGAAGCGCCGTCTTCCAGTTCCGAATGTCCGCAAACAGTGGCCTATTGCCCGCCTCCATGGTCATGCCTTTGCTTGGACTAGTCATGAAGGAGCGGTGCCAGACTGCTGGGAACCCGTTCTTTGAGCGTTTTGGCATTGTGGTGGCAGCCACTGGCATGGCAGTGGCCCTCTTCTCATCAGTGTTGGCGCTCGGCATCACTCGCCCAGTGCCAACC +s panTro1.chr11_random 6899777 259 + 53199993 GGCCTTCTACGTCCAATACAAGTGGGACCGGCTGCTACAGCAGGGAAGCGCCGTCTTCCAGTTCCGAATGTCCGCAAACAGTGGCCTATTGCCCGCCTCCATGGTCATGCCTTTGCTTGGACTAGTCATGAAGGAGCGGTGCCAGACTGCTGGGAACCCGTTCTTTGAGCGTTTTGGCATTGTGGTGGCAGCCACTGGCATGGCAGTGGCCCTCTTCTCATCAGTGTTGGCGCTCGGCATCACTCGCCCAGTGCCAACC +s baboon.ENr232_1 575932 259 - 695787 GGCCTTCTACGTCCAATACAAGTGGGACCGGCTGCTACAGCAGGGAAGCGCCGTCTTCCAGTTCCGAATGTCCGCAAACAGTGGCCTACTGCCCGCCTCCATGGTCATGCCTTTACTTGGACTAGTCATGAAGGAACGGTGCCAGGCTGCTGGGAACCCGTTCTTTGAGCGTTTTGGCATTGTGGTGGCAGCCACTGGCATGGCAGTGGCCCTCTTCTCATCAGTGTTGGCGCTCGGTATCACTCGCCCAGTGCCAACC +s marmoset.ENr232_1 519524 259 - 681407 GGCCTTCTACGTCCAATACAAGTGGGACCGGCTGCTGCAGCAGGGGAACGCCGTCTTTCAGTTCCGAATGTCCGCAAACAGTGGCCTACTCCCCGCCTCCATGGTCATGCCTTTGTTTGGACTAGTCATGAAAGAGCGGTGCCAGGCTGCAGGAAACCCGTTCTTCGAGCGTTTTGGCATTGTGGTCGCAGCCACTGGCATGGCAGTGGCCCTGTTCTCATCAGTGTTGGCGCTGGGCATCACTCGCCCGGTGCCAACC +s galago.ENr232_1 340526 259 - 445664 GGCCTTCTATGTCCAATACAAGTGGGACCGGCTGCTACAGCAGGGAAGCGCCGTCTTCCAGTTCAGAATGTCCGCAAATAGTGGTCTACTGCCCGCCTCCATGGTCATGCCTCTGCTTGGACTAGTTATGAAGGAGCGCTGCCAAGCTGCAGGAAATCAGTTTTTCGAGCGTTTTGGCATTGTGGTGGCAGCCACTGGGATGGCAGTGGCCCTCTTTTCATCAGTTTTGGCGCTGGGCATAACTCGTCCTGTGCCAACT +s rn3.chr3 161637808 259 - 170969371 GGCCTTCTACGTCCAGTACAAGTGGGACCGGCTGCTCCAGCAGGGGAATGCTGTTTTCCAGTTCCGAATGTCCGCGAACAGTGGCTTACTACCGGCCTCCATGGTCATGCCTTTGCTTGGGCTGGTCATGAAGGAGCGCTGCCTGACTGCAGGGAACCCATACTTCGAGCGCTTCGGCATTGTGGTTGCAGCCACTGGCATGGCAGTGGCCCTCTTCTCCTCGGTGTTGGCACTGGGCATTACTCGCCCGGTGCCCACC +s mm6.chr2 151546268 259 - 181764313 GGCCTTCTACGTCCAGTACAAGTGGGACCGGCTGCTCCAGCAGGGCAATGCCGTTTTCCAGTTCCGGATGTCCGCGAACAGCGGCTTACTGCCGGCCTCCATGGTCATGCCTTTGCTTGGGCTAGTCATGAAGGAGCGCTGCCAGACTGCAGGGAACCCATACTTCGAGCGCTTCGGCATTGTGGTTGCAGCTACTGGCATGGCAGTGGCCCTCTTCTCCTCCGTGTTGGCACTGGGCATTACTCGCCCGGTGCCCACC +s cow.ENr232_1 435457 259 - 749201 GGCCTTCTACGTTCAGTACAAATGGGACCGGCTCCTACAGCAGGGAAGCGCGGTCTTCCAGTTCCGAATGTCCGCGAACAGCGGCCTACTGCCCGCTTCGGTGGTCATGCCTTTGCTAGGACTTGTTATGAAGGAGCGCTGCCAGGCTGCGGGGAACCCATATTTCGAGCGGTTTGGAATTGTGGTGGCGGCCACGGGCATGGCAGTGGCCCTCTTCTCCTCAGTATTGGCCCTGGGCATCACTCGCCCGGTGCCCACC +s canFam1.chr9 47276048 259 + 53642819 GGCCTTCTACGTCCAGTACAAGTGGGACCGGCTGCTGCAGCAGGGAAGCGCTGTCTTCCAGTTCCGCATGTCCGCAAACAGTGGCCTGCTGCCCGCATCAATGGTCATGCCTTTGTTCGGACTGGTCATGAAGGAGCGCTGCCAGTCCATGGGGAACCCATATTTTGAGCGCTTTGGAATTGTGGTGGCAGCCACTGGGATGGCAGTGGCCCTCTTCTCGTCGGTACTGGCACTGGGCATCACTCGCCCAGTGCCCACC +s rfbat.ENr232_1 410024 259 - 445008 GGCCTTCTACGTCCAGTACAAATGGGACCGGCTACTACAGCAGGGAAGCGCTGTCTTCCAGTTCCGAATGTCCGCAAACAGTGGCCTCCTGCCCTCCTCGATGGTCATGCCTTTGCTCGGACTGGTCATGAAGGAGCGCTGCCAGGCTGCGGAGCACCCGTACTTCGAGCGCTTTGGAATTGTGGTAGCAGCCACTGGCATGGCAGTGGCCCTGTTCTCATCAGTGTTGGCACTGGGCATCACTCGCCCGGTGCCCACC +s armadillo.ENr232_1 407653 259 - 420596 GGCCTTCTACGTCCAATACAAGTGGGACCGGCTGCTACAGCAGGGAAGCGCTGTCTTTCAGTTTCGAATGTCTGCCAACAGCGGCCTACTGCCCGCCTCCATGGTCATGCCTTTGCTTGGACTGGTCATGAAGGAGCGCTGCCAGGCTGCCGGGAATCCCTACTTCGAGCGCTTTGGCATTGTGGTGGCAACCACTGGCATGGCCGTGGCCCTCTTCTCATCGGTGTTGGCGCTGGGCATTACTCGCCCTGTGCCCACC +s monDom1.scaffold_12698 352491 259 + 3488899 GGCCTTCTATGTCCAGTACAAGTGGGACAGACTGCTCCAGCAGGGGGCTGCAGTCTTTCAGTTCAGGACCACGGCTAACAGTGGCCTCCTGCCTGCCTCCATGGTCATCCCTCTGTTGGGGGTGGTGATGAAGAAGTGCTGTGAAAGTGCAGAAAACGTCTACTTTGAGCGCTTTGGCATTGTGGTGGCAGCTACAGGTATGGCATTGGCCCTATTCCTGTCCATATTGGCACTGGGCATCACCAGGCCAGTACCCACG +s galGal2.chr17 5423494 259 + 10632206 GGCTTTCTATGTCCAGTTTAAATGGGACCGCCTGCTGCAGCAGGGGGGGGCTGTGTTCCAGTTCCGCACCACAGCGAACAGTGGGCTCCTGCCTGCCAGCATGGTCATCCCCTTGCTGGGGATAGCAATGAAGGAGAGGTGCAAGGCTGCTGGTATCGTGTACTTTGAACGCTTTGGCATAGTTGTAGCTTCCACTGGCATGTTGGTTGCTCTATTTTTGTCTGTAATTGCTGTTGGCATCACAAAACCTGTGCCCACC +s tetNig1.chr4 4163579 259 + 6212533 GGCTTTCTACGTTCAGCACAAATGGGATCGTTTGCTCAAGTCAGGGGGTGCTGTGTTCCAGTTTCGCCCCGCAGCAAACAGTGGCATCGTCCCGGCCTCCATGGTGATGCCTTTGCTGGGCTTGGTGCTCAGACAGAGGTGCTCTGCATCAGGGAATGTTTACTTTGAGCGCTTCTCCATGGTCGTCACCATCACTGGCATGATGCTGGCACTGTTTCTCTCCCTGATAGCCTTAGGCATTACAAGACCCGTACCCACC +s danRer2.chr21 1734265 259 + 40848751 GGCTTTTTATGTGCAGCACAAATGGGATCGTCTGATTCGCTCTGGTGCCGCCGTCTTCCAGTTTCGTCCTTCAGCCAACAGCGGCGTCCTGCCAGCCAGTATGGTGCTGCCACTACTGGGACTCACCCTACGAGGCCGCTGCCTCGCTGTGGGAAACGTCTACATGGAGCGATTCGCAATGGTCATCACAGTAATCGGAATGATGTTGGCTCTATTCCTCTCGCTCATCGCATTGGGAATCACGCGGCCGGTGCCAACA + +a score=721779.0 +s hg17.chr9 9640158 129 - 138429268 CCCGG-G---------------------GCCTGGGGCTCCGCTGAGTGGAT-CGGTGCTGGCAGAGGCGGCAGTAGTGTTTGCAGTGGTGCTGAGCATCCACGCAACCGTATGGGACCGATACTCGTGGTGCGCCGTGGCCCTCGCAGTGCA +s panTro1.chr11_random 6899648 129 + 53199993 CCCGG-G---------------------GCCTGGGGCTCCGCTGAGTGGAT-CGGTGCTGGCAGAGGCGGCAGTAGTGTTTGCAGTGGTGCTGAGCATCCACGCAACCGTATGGGACCGATACTCGTGGTGCGCCGTGGCCCTCGCAGTGCA +s baboon.ENr232_1 575803 129 - 695787 CCCGG-G---------------------GCCTGGGGCTCCGCTGAGTGGAT-CGGTGCTGGCAGAGGCGGCAGTAGTGTTTGCAGTGGTGCTGAGCATCCATGCAACTGTATGGGACCGATACTCGTGGTGCGCCGTGGCCCTCGCAGTGCA +s marmoset.ENr232_1 519395 129 - 681407 CCCGA-G---------------------GTCTGGGGCTCCGCTGAGTGGAT-CGGTGCTGGCAGAGACGGCAGTAGTATTTGCAGTGGTGCTGAGCATCCACGCAGCCGTATGGGACCGATACTCGTGGTGCGCCGTGGCCCTCGCAGTGCA +s galago.ENr232_1 340394 132 - 445664 TCCCA-CCC------------------CGACCGCGACTCCGTTGAGTGGGT-CGGTGCTGGCGGAGGCGGCAGTGGTGTTTGCAATGGTGCTGAGCATCCACGCAGCTGTGTGGGACCGATACTCGTGGTGTGCCGTGGCCCTCGCGGTACA +s rn3.chr3 161637679 129 - 170969371 CCCGG-A---------------------GTCTGGGTTTGCGCTGAGCGGGT-CAGTGCTGGCGGAGGCTGCAGTGGTGTTCGCAGTGGTGCTGAGCATCCACGCTGCAGTGTGGGACCGATACTCCTGGTGCGCCGTGGCCTTAGCAGTGCA +s mm6.chr2 151546142 126 - 181764313 ---GG-A---------------------GTCTGGGGCTGCGCTGAGCGGGT-CGGTGCTGGCGGAGGCTGCAGTGGTGTTCGCCGTGGTGTTGAGCATCCACGCTGCAGTGTGGGACCGATACTCCTGGTGCGCGGTGGCCCTCGCGGTGCA +s cow.ENr232_1 435328 129 - 749201 CCCTG-G---------------------GTCCGGGGCTCCGCTGAGTGGGT-CCGTGCTGGCAGAGGCGGCGGTGGTGTTCGTAGTGGTGCTGAGCATCCACGCAGCCGTGTGGGATCGATACTCGTGGTGCGCCGTGGCCCTCGCGGTGCA +s canFam1.chr9 47275925 123 + 53642819 CCC----------------------------CGGGGCTCCGCTGAGTGGGT-CAGTGCTGGCGGAGGCAGCAGTAGTGTTCGCAGTGGTGCTGAGCATCCACGCAGCCGTGTGGGACCGATACTCGTGGTGCGCCGTGGCTCTCGCAGTGCA +s rfbat.ENr232_1 409895 129 - 445008 CCCGG-G---------------------GATCGGAGCGCCGCTGAGCGGGT-CGGTGCTGGCAGAGGCGGCCGTGGTGTTCGCCGTGGTGCTGAGCATCCACGCGACCGTGTTGGATCGATATTCGTGGTGCGCTGTGGCCCTCGCGGTGCA +s armadillo.ENr232_1 407524 129 - 420596 cccgg-c---------------------gcccggggcTCCGCTGAGCGGGT-CGGTGCTGGCAGAGGCGGTGGTGGTGTTCGTCATGGTGCTGAGCATCCACGCGGCCGTGTGGGATCGCTACTCGTGGTGCGCCGTGGCCCTCGCAGTGCA +s elephant.ENr232_30 30394 129 - 30525 CCCGG-G---------------------GGCGGGAGCTCCGCTGAGCGGTT-CGGTCCTGGCAGAGGCGGCAGTGATGGTCGCCATGGTGCTGAGCATTCACGTAACCGTGTGGGTACGGTACTCGTGGTGCGCTGTGGCCCTCGCAGTGCA +s monDom1.scaffold_12698 352341 150 + 3488899 GCTGG-CACAAACTGAGGGTAGTCGAATGGCTTCAGCCATGCCGAACAAAG-CTATGCTGGGAGAAGCCACCATCGTGTTTATGGTAGTGCTAAGCATCCATGCCTCAGTATGGGACCGTTATTCCTGGTGTACTGTAGCCCTGGCTGTTCA +s galGal2.chr17 5423364 130 + 10632206 CACGCTG---------------------GACTGGAACCATGTTAAACAAAC-CAGTGCTGGTGGAATCCCTGATCGTCTTCAGCATCGTTCTGTGCGTGCATGCAGTGGTGTGGGACCGCTACTCCTGGTGTGCTGTAGCTCTTGCCATCCA +s tetNig1.chr4 4163453 126 + 6212533 -CCAGCAA------------------------GTAGCAATGGAGA-TGAATCCAGTCTTTGTCGAGTCCTCCATTGTTTTTGCCATTGTGGGGTGTGTCCACATGGTGCTGTGGAACCAGCATTCCTGGTGCAGTATTGCACTCTTCATCCA +s danRer2.chr21 1734133 132 + 40848751 -TCACACACAC------------------TCTGCAGTCATGCAGA-TGGATCCAGTGCTGGTTGAATCTGCGGTGGTGTTCGCCATGGTGGTTTCCGTACACATGGCCGTGTGGAATCAGCTGTCCTGGTGCTGCATGGCATTGGCCGTCCA + +a score=11576.0 +s hg17.chr9 9640151 7 - 138429268 CTCCG-------------------------------------GC +s panTro1.chr11_random 6899641 7 + 53199993 CTCCG-------------------------------------GC +s baboon.ENr232_1 575796 7 - 695787 CGCCG-------------------------------------GC +s marmoset.ENr232_1 519388 7 - 681407 CTCCG-------------------------------------AC +s galago.ENr232_1 340387 7 - 445664 CCCCA-------------------------------------GC +s rn3.chr3 161637672 7 - 170969371 CCCAA-------------------------------------GC +s cow.ENr232_1 435321 7 - 749201 CCCCG-------------------------------------AC +s canFam1.chr9 47275918 7 + 53642819 CCCCG-------------------------------------GT +s rfbat.ENr232_1 409888 7 - 445008 CCCCG-------------------------------------GC +s armadillo.ENr232_1 407517 7 - 420596 ccccg-------------------------------------gc +s elephant.ENr232_30 30387 7 - 30525 CTCCG-------------------------------------AC +s monDom1.scaffold_12698 352297 44 + 3488899 CTCCATGATCCAAATCCCTACCTCTTTGGGAGGGAAACAACCGC +s galGal2.chr17 5423357 7 + 10632206 CCAAA-------------------------------------GC + +a score=263333.0 +s hg17.chr9 9640132 19 - 138429268 --------ATGACCCGAGAGTGCCCAT +s panTro1.chr11_random 6899622 19 + 53199993 --------ATGACCCGAGAGTGCCCAT +s baboon.ENr232_1 575777 19 - 695787 --------ATGACCCGAGAGTGCCCAT +s marmoset.ENr232_1 519369 19 - 681407 --------ATGACCCGAGAGTGCCCAT +s galago.ENr232_1 340368 19 - 445664 --------ATGACTCGAGAATGCCCAC +s rn3.chr3 161637653 19 - 170969371 --------ATGACCCGACAGTGCCCTC +s mm6.chr2 151546119 19 - 181764313 --------ATGACCCGACAGTGCCCTC +s cow.ENr232_1 435302 19 - 749201 --------ATGACCCGAGAGTGCGCTC +s canFam1.chr9 47275899 19 + 53642819 --------ATGACCCGAGAGCACGCTC +s rfbat.ENr232_1 409869 19 - 445008 --------ATGACCCGAGAGTGTGCTC +s armadillo.ENr232_1 407498 19 - 420596 --------ATGACCCGAGATTGCGCTc +s elephant.ENr232_30 30368 19 - 30525 --------ATGACCCGAGATAGCGCTC +s monDom1.scaffold_12698 352278 19 + 3488899 --------TTGAAGAGAGAGCCTTTTC +s galGal2.chr17 5422766 27 + 10632206 gttagccaatggcccagcagtgcactc + +a score=965726.0 +s hg17.chr9 128882427 96 + 138429268 ATGGCG-TTCCGGAGGGCCGAGGGCACGTCTATGATCCAGGCCC-TGGCCATGACGGTGG-CCGAGATCCCCGTGTT--CCTGTACACGACGTTTGGGCAG +s panTro1.chr11_random 46393737 96 - 53199993 ATGGCG-TTCCGGAGGGCTGAGGGCACGTCTATGATCCAGGCCC-TGGCCATGACGGTGG-CCGAGATCCCCGTGTT--CCTGTACACGACGTTTGGGCAG +s baboon.ENr232_1 210498 96 + 695787 ATGGCG-TTCCGGAGGGCTGAGGGCACGTCCATGATCCAGGCCC-TGGCCATGACGGTGG-CTGAGATCCCCGTGTT--CCTGTACACGACATTTGGGCAG +s rheMac1.SCAFFOLD46502 12946 96 - 13331 ATGGCG-TTCCGGAGGGCTGAGGGCACGTCCATGATCCAGGCCC-TGGCCATGACGGTGG-CTGAGATCCCCGTGTT--CCTGTACACGACGTTTGGGCAG +s galago.ENr232_1 201534 96 + 445664 ATGGCG-TTCCGGAGGACTGAGGGCATGTCCATGATCCAGGCCC-TGGCCATGACAGTGG-CTGAGATCCCTGTGTT--CCTGTATACAACGTTTGGGCAG +s rn3.chr3 9412966 96 + 170969371 ATGGCA-TTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTC-TGGCCATGACTGTGG-CTGAGATACCAGTGTT--CCTGTACACGACTTTTGGTCAG +s mm6.chr2 30299854 96 + 181764313 ATGGCA-TTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTC-TGGCCATGACTGTGG-CTGAGATTCCAGTGTT--CCTGTACACAACTTTTGGTCAG +s rabbit.ENr232_1 3312 96 + 7820 ATGGAG-TTCCGGCGGACAGAGGGCATGTCCATGATCCAGGCCC-TGGCCATGACGGTGG-CCGAGATCCCTGTGTT--TCTGTACACGACATTTGGGCAG +s cow.ENr232_1 52030 96 + 749201 ATGGCG-TTCCGGCGGACCGAGGGCATGTCCATGATACAGGCCC-TGGCCATGACAGTGG-CTGAGATCCCTGTGTT--CCTTTACACGACGTTCGGGCAG +s canFam1.chr9 6452102 96 - 53642819 ATGGCA-TTCCGGAGGACTGAGGGCATGTCCATGATCCAGGCAC-TGGCCATGACGGTGG-CCGAGATCCCTGTGTT--CCTGTATACAACGTTTGGGCAG +s rfbat.ENr232_1 101758 96 + 445008 ATGGCG-TTCCGGAGGACGGAGGGCATGTCCATGATCCAAGCCC-TGGCCATGACGGTGG-CCGAGATCCCTGTGTT--CCTGTACACGACGTTTGGGCAG +s shrew.ENr232_3 619 92 - 4162 ATGGCG-TTCCGGAAGACCGAAGGTGTGTCCATGATCCAGGC-C-TGGGCATGAC-GTGG-ACGAGATCCCCGTGTT---CTCTACACCACGTTTGGGCA- +s armadillo.ENr232_1 112823 96 + 420596 ATGGCG-TTCCGGAGGGCCGAGGGCATGTCTATGATCCAGGCCC-TGGCCATGACGGTGG-CTGAGATCCCTGTGTT--CCTGTACACAACGTTTGGGCAG +s tenrec.ENr232_10 803 100 + 7252 ATGGCGTTTCCAGAGGACCGAGGGCATGTCCATGATCCAGGCCCTTGGCCATGACGGTGGCCTGAGATCCTTGTGTTTCCTTGTACACGACGTTTGG-CAG +s monDom1.scaffold_12698 3285504 96 - 3488899 ATGGCT-TTCCGAAGAACCGAAGGCATGTCCGTGATCCAAGCTT-TGGCCATGACGGTAG-CAGAGATACCTGTGTT--TCTCTACACAACCTTTGGACAG +s platypus.ENr232_1 48158 96 + 341161 ATGGCT-TTCCGAAGAACCGAGGGAATGTCCATGATCCAAGCTC-TGGCCATGACGGTGG-CGGAGATCCCCGTGTT--CCTCTACACGACCTTCGGACAG +s xenTro1.scaffold_1229 139899 96 + 221164 ATGGCA-TTTCAGAGAGCAGAGGGGATGTCAATCATTCAGGCCC-TTGCCATGACGGTAG-CAGAGATACCAGTGTT--TTTGTACACGACCTTTGGACAG +s tetNig1.chr4 3086864 96 + 6212533 ATGTCG-CTCAGACAAGCAGAAGGAATGTCCATTGCCCAGGCTC-TGGCTATGACAGTAG-CAGAGATCCCAGTGTT--CCTTTATTCCACATTTGGACAG +s fr1.chrUn 120365676 96 + 349519338 ATGTCA-CTCAGACAAGCGGAAGGGATGTCCATTGCCCAGGCTT-TGGCAATGACGGTAG-CAGAGATCCCAGTGTT--CCTTTATTCCACGTTTGGACAG + +a score=276081.0 +s hg17.chr9 9491998 41 - 138429268 TGCGTGCCCTGCTGCAGAGCCACCCCCGGGCCAAGCTCTGA +s panTro1.chr11 9305836 41 - 123086034 TGCGTGCCCTGCTGCAGAGCCACCCCCGGGCCAAGCTCTGA +s baboon.ENr232_1 424948 41 - 695787 TGCGTGCCCTGCTGCAGAGCCACCCCCGGGCCAAGCTCTGA +s rheMac1.SCAFFOLD110533 13828 41 + 55344 TGCGTGCCCTGCTGCAGAGCCACCCCCGGGCCAAGCTCTGA +s galago.ENr232_1 203214 41 - 445664 TGCGTGCCCTGTTGCACAGCCACCCTCGGGCCAAACTCTGA +s rn3.chr3 161520819 41 - 170969371 TGCGCACCTTACTCCAGAACCACCCCAGGGCCAAGCTCTGA +s mm6.chr2 151429532 41 - 181764313 TGCGCACCCTACTCCAGAACCACCCCAGGGCCAAGCTCTGA +s cow.ENr232_1 652798 41 - 749201 TGCGGGCTCTGCTCCAGAGCCACCCCCGGGCCAAGCTCTGA +s canFam1.chr9 47142418 41 + 53642819 TGCGCGCTCTGCTGCAGAGTCACCCTCGGGCCAAGCTGTGA +s rfbat.ENr232_1 305932 41 - 445008 TGCGTGCTCTGCTGCAGAGCCACCCCCGGGCCAAGCTCTGA +s elephant.ENr232_7 67625 41 - 70443 TGCGTGCACTGATGCAGAGCCACCCCCGGGCCAAGCTCTGA +s monDom1.scaffold_12698 128981 41 + 3488899 TACGTACCCTGCTGCAGGAACACCCACGGGCCAAGCTATGA +s platypus.ENr232_1 253747 41 - 341161 TGCGGACCCTGCTGCTGGCCCACCCCAAGTCTAAGCTGTGA +s galGal2.chr17 5330722 41 + 10632206 TGAGAAGCTTGCTCCAATCTACCCCCAAATCCAAACTGTAA +s tetNig1.chrUn_random 152446534 41 - 171761319 TGAGGACGCTCTTGGAACAAACCCCGAGAGCCAAACTGTGA +s fr1.chrUn 31403856 41 - 349519338 TGAGGACACTGCTAGAACAAAGCCCAAGAGCTAAACTGTGA + +a score=1544970.0 +s hg17.chr9 9491823 175 - 138429268 GTCCCTGCCAAGACAGACTGTGTCATGTTCTTCGGGCCCGTGGTCCCCGACGGCTACGGTGTCTGCTATAACCCCATGGAGGCCCACATCAACTTCTCCCTGTCGGCCTACAACAGCTGCGCGGAGACCAACGCCGCCCGCCTGGCGCATTACCTGGAGAAGGCGCTCCTGGACA +s panTro1.chr11 9305661 175 - 123086034 GTCCCTGCCAAGACAGACTGTGTCATGTTCTTCGGGCCCGTGGTCCCCGACGGCTACGGTGTCTGCTATAACCCCATGGAGGCCCACATCAACTTCTCCCTGTCGGCCTACAACAGCTGCGCAGAGACCAACGCCGCCCGCCTGGCGCATTACCTGGAGAAGGCGCTCCTGGACA +s baboon.ENr232_1 424773 175 - 695787 GTCCCTTCCAAGACAGACTGCGTCATGTTTTTTGGGCCCGTGGTCCCCGACGGCTACGGTGTCTGCTATAACCCCATGGAGGCCCACATCAACTTCTCCCTGTCGGCCTACAACAGCTGCGCAGAGACCAACGCCGCCCGCCTGGCACATTACCTGGAGAAGGCGCTCCTGGACA +s rheMac1.SCAFFOLD110533 13653 175 + 55344 GTCCCTTCCAAGACAGACTGCGTCATGTTCTTTGGGCCCGTGGTCCCCGATGGCTACGGTGTCTGCTATAACCCCATGGAGGCCCACATCAACTTCTCCCTGTCGGCCTACAACAGCTGCGCAGAGACCAACGCCGCCCGCCTGGCACATTACCTAGAGAAGGCGCTCCTGGACA +s galago.ENr232_1 203039 175 - 445664 GTACCTGCCAAGACAGACTGTGTCATGTTCTTTGGGCCTGTGGTCCCTGATGGCTACGGCGTCTGCTATAACCCCATGGAGGCCCACATCAACTTCTCCCTCTCCGCCTACAACAGCTGTGCAGAGACCAATGCTGCCCGCCTGGCACACTACCTGGAGAAGGCGCTGCTGGACA +s rn3.chr3 161520644 175 - 170969371 GTCCCTGCCAAGACAGACTGTGTCATGTCCTTCGGACCTGTGGTCCCAGACGGTTACGGCATCTGCTACAATCCCATGGAGGCCCATATCAACTTTTCCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCACTACTTGGAGAAAGCTCTGCTGGACA +s mm6.chr2 151429357 175 - 181764313 GTCCCTGCCAAGACAGACTGTGTCATGTTCTTCGGACCTGTGGTCCCAGATGGTTATGGCATCTGCTACAACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCACTACTTGGAGAAAGCTCTGCTGGACA +s cow.ENr232_1 652623 175 - 749201 GTCCCCGCCAAGACAGACTGTGTCATGTTCTTTGGGCCCGTGGTGCCAGACGGCTATGGCGTCTGCTATAACCCCATGGAGACACACATCAACTTCTCCGTGTCAGCCTACAACAGCTGTGCCGAGACCAACGCGGTCCACCTGGCGCACTATCTAGAGAAGGCACTCCTGGACA +s canFam1.chr9 47142243 175 + 53642819 GTCCCTGCCAAGACAGATTGCGTCATGTTCTTTGGGCCCGTGGTCCCAGACGGCTATGGCGTGTGCTACAACCCCATGGAGACGCACATCAACTTCTCTGTGTCAGCCTACAACAGCTGTGCCGAGACCAATGCAGCCCGCCTGGCGCACTACCTGGAGAAGGCACTCCTGGACA +s rfbat.ENr232_1 305757 175 - 445008 GTCCCTGCCAAGACAGACTGCGTCATGTCCTTTGGGCCCGTGGTCCCCGACGGCTACGGTGTGTGCTACAACCCCATGGAGAGCCACATCAACTTCTCTGTGTCGGCCTACAACAGCTGTGCTGAGACCAACGCGGCCCGCCTGGGGCACTACCTGGAGAAGGCGCTCCTGGACA +s elephant.ENr232_7 67450 175 - 70443 GTCCCTGCCAAGACAGACTGTGTCATGCTCTTTGGGCCTGTGGTCCCAGACGGATATGGTGTCTGCTATAACCCCATGGAGGGGCACATCAACTTCTCTGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCTCGCCTGGCACACTACCTGGAGAAGGCCCTCCTGGACA +s monDom1.scaffold_12698 128806 175 + 3488899 GTCCCTGCCAAAACTGACTGTGTCATGTGCTTTGGACCAGTGGTCCCTGATGGTTATGGTGTCTGCTACAACCCCATGGCTGAACACATCAACTTTGTAATCTCTGCCTTCAACAGCTGTGCTGAGACCAATGCTGCCCGTCTCGCACATTACTTGGAGAAGGCCCTGCTGGACC +s platypus.ENr232_1 253572 175 - 341161 GTCCCGGCCAAGACGGACTGCGTGATGTGCTTCGGACCGGTGGTGCCAGACGGTTACGGCGTCTGCTACAACCCCATGGCGGATCACGTCAACTTCGCCGTGTCGGCCTTCAACAGCTGCGCGGAGACCAATGCCGCGCGTATGGCCCACTACCTGGAAAAGGCCCTGCTGGACT +s galGal2.chr17 5330547 175 + 10632206 GTCCCAGCAAAGACAGACTGTGTGATGTGTTTTGGTCCCGTGGTTCCAGATGGCTATGGAATCTGTTACAACCCTATGGATGAACACATCAACTTTGCCATTTCAGCATTCAACAGCTGTGCTGACACAAATGCAGCTCGCATGGCACATTATCTTGAGAAAGCACTGCTAGACA +s tetNig1.chrUn_random 152446359 175 - 171761319 GTGCCATCCAAGACAGACTGCGTCATGTGTTTTGGCGCCGTCGTGGCCGACGGATACGGCGTGTGCTACAATCCCATGGACGATCACATCAACTTTGCGGTGTCCTCCTATAACGCCTGTGGAAAAACCAAGTCGGCACATTTGGCCCAAGCCATCGAGGAGGCCCTGCTTGACA +s fr1.chrUn 31403681 175 - 349519338 GTTCCATCCAAGACAGACTGTGTCATGTGTTTTGGTCCTGTTGTGTCTGATGGCTATGGCGTGTGCTACAATCCTATGAATGATCACATCAACTTTGCAGTGTCATCCTTTAACACCTGTGAAGAGACCAACGTGATGCATCTGGCCCAGGCTATAATGGATGGCCTGCTGGACA +s danRer2.chr8 3772853 175 - 37493003 GTTGGATCAAAGACTGACTGCGTAATGTGTTTTGGACCCATGGTTCCTGATGGTTATGGTGTCTGTTACAATCCTATGGATGATCATATCAACTTTGCTGTGACTGCTTTCAATAGCTGTGAAGAAACCAATGCCACTAAATTGTCCACGTTTCTAACGGATGCACTTCTGGACA + +a score=414635.0 +s hg17.chrX 122745047 58 + 154824264 ATGACTTTTAACAGTTT-TGAAGGATCTAAAACTTGTGTACCTGCAGACATCAATAAGG +s panTro1.chrX 126858618 58 + 160174553 ATGACTTTTAACAGTTT-TGAAGGATCTAAAACTTGTGTACCTGCAGACATCAATAAGG +s rheMac1.SCAFFOLD61023 23303 58 - 26046 ATGACTTTTAACAGTTT-TGAAGGATCTAAAACTTGTGTACCTGCAGACATCAATAAGG +s marmoset.ENr324_1 334825 58 + 613215 ATGACTTTTAACAGTTT-TGAAGGATCTAAAACTTGTGTACCTGCAGACATCAATAAGG +s galago.ENr324_1 47480 58 + 139508 ATGACTTTTAACAGTTT-TGAAGGATCTAAAACTTGTATACCTGCAGACATCAATAAGG +s rn3.chrX 157748736 58 - 160775580 ATGACTTTTAACAGTTT-TGAAGGATCTAGAACTGTTGTACCTGCAGACACCAATAAGG +s mm6.chrX 36615195 58 + 163688980 ATGACTTTTAACAGTTT-TGAAGGAACTAGAACTTTTGTACTTGCAGACACCAATAAGG +s rabbit.ENr324_1 208331 58 + 535234 ATGACTTTTAACAGTTT-TGAAGGATCTAAAACTTGTGTACCTGCAGACATCAATAAAG +s canFam1.chrX 98422419 58 + 126913094 ATGACTTTTAACAGTTT-TGAAGGAGCTAAAACTTGTGTACCTGCAGGCATCAATAAGG +s elephant.ENr324_1 305262 58 + 630467 ATGACTTTTAACAGTCT-CGAAAGATCTAGAACTTTTCCACCTGCAGACATCAGTAAAG +s monDom1.scaffold_18542 2098955 58 + 4454299 ATGACTTTTAAGAGTTT-TGAAGATTCTAAAACTTGTGTGCCTCCAGACATCAATAAAG +s platypus.ENr324_9 31530 58 - 41000 ATGACCTGTAACAGTCC-GGAAGAACTCAGAACTTCAAATCCTTCAGAGGTAAATAAAG +s galGal2.chr4 75226910 58 - 90634903 ATGACGTGTAATGGCCC-AGATAGCTCTGAATCTGGTGCCACTCCAGCCACTGACGGTG +s xenTro1.scaffold_69 2110789 52 - 2695077 ATGACATGC--CAGTGT-CCGAAGATGTCAGAC---GGTGCTTAT-GATATGGATGTGG +s tetNig1.chr1 3637960 47 + 16827091 TTTAGTCGGCACA----ATGGAGGACCAAAGAC--------ACGACAACAGCAATCTGG +s danRer2.chr14 27993014 47 - 59999824 TTTAGTTACTACAA-ATATGGCACACTCAACTC-----------ATAATGGCGAATTGG + +a score=5324991.0 +s hg17.chrX 122745105 819 + 154824264 AAGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTC-CTGTTTCAGCATCAACACTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGT------------------ATCCCCAAATTGCAGATTTATCAACGGCTTTTAT---CTT---GAAAATAGTGCCACGCAGTC---------------TACAAATTCTGGTATCCAGAATGG---TCAG-------TACA---AAGTTGAAAAC-TATCTGGGAAGCAG------------AGAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAATCT---T---AATATTCGAAGTGAATCTG-ATGCTGTGAGTTCTGATA----GGAAT-----------TTCCC--AAATTCAACAAAT--CTTCCAAGAAATCCATCC-ATGGCAGATTATGAAGCACGGATCTTTACTTTTGGGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s panTro1.chrX 126858676 819 + 160174553 AAGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTC-CTGTTTCAGCATCAACACTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGT------------------ATCCCCAAATTGCAGATTTATCAACGGCTTTTAT---CTA---GAAAATAGTGCCACGCAGTC---------------TACAAATTCTGGTATCCAGAATGG---TCAG-------TACA---AAGTTGAAAAC-TATCTGGGAAGCAG------------AAAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAATCT---T---AATATTCGAAGTGAATCTG-ATGCTGTGAGTTCTGATA----GGAAT-----------TTCCC--AAATTCAACAAAT--CTTCCAAGAAATCCATCC-ATGGCAGATTATGAAGCACGGATCTTTACTTTTGGGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s rheMac1.SCAFFOLD61023 23361 819 - 26046 AAGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACTTTTGCAGATTTTCCAAGTAGTAGTC-CTGTTTCAGCATCAACACTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGT------------------ATCTCCAAATTGCAGATTTATCAATGGCTTTTAT---TTT---GAAAATAGTGCCACGCAGTC---------------TACAAATTCTGGTATCCAGAATGG---TCAG-------TACA---AAGTCGAAAAC-TATCTGGGAAGCAG------------AAAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAATCT---T---AATATTCGAAGTGAATCTG-ATGCTGTGAGTTCTGATA----GGAAT-----------TTCCC--AAATTCAACAAAT--CTTCCAAGAAATCCATCC-ATGGCAGATTATGAAGCACGGATCATTACTTTTGGGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s marmoset.ENr324_1 334883 819 + 613215 ATGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAACACTTTTGCTAATTTTCCAAGTAGTAGTC-TTGTTTCAGCATCAACACTGGCAAGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCCGTAGATAGATGGCAATATGGAGACTCAGCAATTGGAAGACACAGGAAAGT------------------ATCCCCAAATTGCAGATTTATCAACGGCTTTTAT---TTT---GAAAATAGTGCCACGCAACC---------------TACAAATCCTGGTATCCAGAATGG---TCAG-------TACA---AAGTTGAAAAC-TATCTGGGAAGCAG------------AAAT---------CATTTTGCTTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGACTGAAGTCCTTTCAGAACTGGCCAGACTATGCCCACCTAACCCCAAGAGAGTTAGCGAGTGCTGGACTCTACTACACAGGTATTGATGACCAAGTGCAGTGCTTTTGTTGTGGAGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGCAATCT---T---AACATCCGAAGTGAATCTG-ATCCTGTGAGTTCTGATA----GGAAT-----------TACCC--AAATTCAACAAAT--CTTCCAAGAAATCCATCC-ATGGCAGATTATGAAGCACGGATCATTACTTTTGGGACGTGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s galago.ENr324_1 47538 819 + 139508 ATGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACTTTTGCTAATTTTCCAAGTACTAGTC-CTGTTTCAGCATCAACACTGGCACGAGCAGGTTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCAGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGT------------------ATCCCCAAATTGCAGATTTATCAGCGGCTTTTAT---TTT---GAAAATAGTGCCATGCAGCC---------------TACAAATCCTGGTGTCCAGAATGG---TCAG-------TACA---AAGTTGAAAAC-TATCTGGGAAACAG------------AAAT---------CATTTTGGTTTAGACAGGCCATCTGAGACTCACGCAGACTATCTTCTGAGAACTGGACAGGTTGTAGATATATCAGACACCATTTACCCAAGGAATCCTGCCATGTGTAGTGAAGAAGCTAGATTAAAGTCATTCCAGAATTGGCCAGACTATGCCCACTTAACCCCAAGAGAGTTAGCTAGTGCTGGACTCTACTACACAGGTATTGATGATCAAGTGCAGTGCTTTTGTTGTGGTGGAAAATTGAAAAATTGGGAACCTTGCGATCGCGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAACAT---T---AATACTAGAAGTGAATCTG-ATGTTGTGAGTTCTGATA----GGAAT-----------TGCCC--AAATTCAACAAAT--CTTCCAAGAAATCCATCC-ATGGCAGATTATGAAGCACGGATCATTACTTTTGGGACGTGGATATACTCAATTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s rn3.chrX 157748794 816 - 160775580 ATGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACATTTGCTAACTTCCCAAGCAGCAGTC-CTGTTTCAGCATCAACATTGGCGCGAGCGGGGTTTCTCTACACTGGTGAAGGAGACACCGTGCAGTGTTTCAGTTGTCACGCGGCAGTAGATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGAGAAT------------------ATCCCCAAATTGCAGATTTATCAATGGTTTTTAT---TTT---GAAAACGGTGCCACACAGTC---------------TACATCTCCTGGCATCCAAAATGG---CCAG-------TACA---AATCTGAAAAC-TGTGTGGGAAACAG------------AAAT---------CATTTTGCTCTTGACAGGCCGTCGGAGACTCATGCAGATTATCTCCTGAGAACTGGACAGGTTGTAGATATTTCAGATACCATATACCCGAGGAACCCGGCCATGTGTAGTGAAGAAGCCAGACTGAAGACGTTTCAGAACTGGCCAGACTATGCCCATTTAAGCCCCAGAGAGTTAGCTAGTGCTGGACTCTACTACACGGGGATTGATGATCAAGTGCAATGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCCTGTGACCGTGCCTGGTCAGAGCACAGGAGACACTTTCCCAACTGCTTCTTCGTTTTGGGCCGGAATGT---T---AATGTTCGAAGTGAGTCTG-GTGT---GAGTTCAGATA----GGAAT-----------TTCCC--AAATTCAACAAAT--TCTCCAAGAAATCCAGCC-ATGGCAGAATATGACGCACGGATCGTTACTTTTGGAACATGGCTATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s mm6.chrX 36615253 816 + 163688980 ATGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACATTTGCTAACTTCCCAAGTAGTAGTC-CTGTTTCAGCATCAACATTGGCGCGAGCTGGGTTTCTTTATACCGGTGAAGGAGACACCGTGCAATGTTTCAGTTGTCATGCGGCAATAGATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGAGAAT------------------ATCCCCAAATTGCAGATTTATCAATGGTTTTTAT---TTT---GAAAATGGTGCTGCACAGTC---------------TACAAATCCTGGTATCCAAAATGG---CCAG-------TACA---AATCTGAAAAC-TGTGTGGGAAATAG------------AAAT---------CCTTTTGCCCCTGACAGGCCACCTGAGACTCATGCTGATTATCTCTTGAGAACTGGACAGGTTGTAGATATTTCAGACACCATATACCCGAGGAACCCTGCCATGTGTAGTGAAGAAGCCAGATTGAAGTCATTTCAGAACTGGCCGGACTATGCTCATTTAACCCCCAGAGAGTTAGCTAGTGCTGGCCTCTACTACACAGGGGCTGATGATCAAGTGCAATGCTTTTGTTGTGGGGGAAAACTGAAAAATTGGGAACCCTGTGATCGTGCCTGGTCAGAACACAGGAGACACTTTCCCAATTGCTTTTTTGTTTTGGGCCGGAACGT---T---AATGTTCGAAGTGAATCTG-GTGT---GAGTTCTGATA----GGAAT-----------TTCCC--AAATTCAACAAAC--TCTCCAAGAAATCCAGCC-ATGGCAGAATATGAAGCACGGATCGTTACTTTTGGAACATGGACATCCTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s rabbit.ENr324_1 208389 819 + 535234 ATGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACTTTTGCTAATTTTCCAAGTAGTAGTC-CTGTTTCAGCGTCAACACTGGCACGAGCAGGTTTTCTTTATACTGGTGAAGGAGACACTGTGCGATGCTTTAGTTGTCATGCAGCAGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGT------------------ATCCCCAAATTGCAGATTTATCAACGGCTTTTAT---TTT---GAAAATAGTGCTGCACAATC---------------TACAAATCCTGGTGTCCAGAATGG---TCAA-------TACA---AAGGTGAAAAC-TACCTGGGAAACAG------------AAAT---------CATTTTGCTTTAGACAGACCATCTGAGACTCACGCAGACTATCTTTTGAGAACTGGACAGGTTGTAGATATATCAGACACCATATACCCAAGGAACCCTGCCATGTGTAGTGAAGAAGCTAGATTAAAGTCATTTCAGAACTGGCCAGACTATGCCCACCTAACCCCCAGAGAGTTAGCTAGTGCTGGGCTCTACTACACAGGTATTGATGATCAAGTGCAATGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCGGAACATAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAACGT---T---AATATTCGAAGTGAATCTG-ATGTTGTGAGTTCTGATA----GGAAT-----------TTTCC--AAATTCAACAAAT--CCTCCAAGAAATCCAGCC-ATGGCAGATTATGAAGCACGGATCATTTCTTTTGGGACGTGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s canFam1.chrX 98422477 819 + 126913094 ATGAAG---AATTTGTAGAAGAGTTT------------AATAGATTAAAAACTTTTGCTAATTTTCCAAGTAGCAGTC-CTGTTTCAGCATCAACGTTAGCACGAGCTGGTTTTCTGTATACTGGTGAAGGAGATACTGTGCGGTGCTTTAGTTGTCATGCATCAATAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGT------------------ATCCCCAAATTGCAGATTTATCAATGGCTTTTAT---TTT---GAAAACACTGCTGCACAACC---------------TACAAATCCAGGTATCCAAAATGG---TCAA-------TATA---ATGCAGAAAAC-TATCTGAGAAACAG------------AGAT---------CATTTTGTTTTAGACAGACCATCTGAGACTCATGCAGATTATCTTTTGAGAACTGGACAGGTCGTAGATATATCAGACACCACATACCCGGAGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAACTCATTTCAGAACTGGCCAGACTATGTCCACTTGACCCCAAGAGAGTTAGCTAGTGCTGGATTCTACTACACAGGTATTGACGATCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCGTGTGATAATGCATGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTCTGGGCCGGAATGT---T---AATATTCGAAGTGAATCTG-ATGTTGCGAGTACTGATA----GGAAC-----------GTCCC--AAATTCAACAAGT--ATTCCAGAAAATCCAGCC-ATGGCAGATTATGAAGCACGGATCGTTACTTTTCGGATGTGGATGTGTTCAATTAACAAGGAGCAACTTGCAAGAGCTGGATTTTATTCTTTAG +s elephant.ENr324_1 305320 819 + 630467 ATGAAG---AATTTGTAGAAGAGTTC------------AGTAGATTAAAAACTTTTGCTAATTTTCCAAGTAGCAGTC-CTGTTTCAGCATCAACGCTGGCACGAGCTGGTTTTCTGTATACTGGTGAAGGAGACACCGTGCGGTGCTTTAGTTGTCATGCAGCAGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGAAAGC------------------ATCCCCAAATTGCAGATTTATCAATGGCTTTTAT---TTT---GAAAATAATACTGCTCAACC---------------TACAAATCCTGGTGTCCAAAATGG---TCAG-------TACA---AAGTGGAAAAC-TATCCAGGAAACAG------------AAAT---------CATTTTGTTTTAGACAGGCCATCTGAGACTCATGCAGACTATCTTTTGAGAACTGGGCAAGTTGTAGATATATCGGACACCATATACCCACGGAACCCTGAGATGTGTAGTGAAGAAGCTAGATTGAAGACATTTCACAACTGGCCAGAGTATGCCCACTTAACCCCAAGAGAGTTAGCGAGTGCTGGACTCTACTACACAGGTATTGATGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCACGCGTGGTCAGAACACAGGCGACACTTCCCTAACTGCTTCTTTGTTTTGGGCCGGAATAT---T---AATACTCGAAGTGAATCCG-ATGTCTTGAGTTCTGATA----GGAAT-----------TTCCC--AAATTCAACAAAT--TCTCCAAGAAACCCAGCC-ATGGCAGATTATGAAGCACGGATCATGACTTTTGGGACGTGGATGTACTCTGTGAACAAGGAGCAGCTTGCAAGAGCTGGATTTTACTCTCTAG +s tenrec.ENr324_16 1245 818 - 3110 ATGAAG---AATGTGTAGAAGAGTTC------------AATAGAT-GAAAACCTTTGCCAAATTTACAAGCAGTAGTC-CTGTTTCCGCCTCAACGCTGGCACGAGCTGGCTTTCTCTATTCTGGTGAAAGAGACACCGTGCGGTGCTTTAGTTGTCATGCAGCAGTAGATAGATGGCAATATGGTGACTCCGCCATTGGAAGACACAGGAAAGC------------------ATCCCCTAATTGCAGATTTATCAGTGGCTTTCAT---TTT---GAAAATAAGGCTGCGCAACC---------------TACAAATTCTGGTGTCCAAAATGG---ACTG-------TACA---ACAGTGAACAC-TATGCACGAAACAA------------AAAT---------CACTTGGTTTTAGACAGGCCTTCTGAGACCCATGCAGACTATCTCTTGAGAACTGGACAAGTTGTAGATATGTCTGACACCATATACCCGAGGAACCCTGAGATGTGTAGCGAAGAAGCTAGGTTAAATTCATTTCAGAATTGGCCAGAGTATGCCCACCTAACCCCAAGAGAGCTAGCCAGTGCTGGGCTCTACTACACAGGGATCGATGATCAAGTGCAGTGCTTTTGTTGTGGCGGGAAACTGAAAAATTGGGAACCTTGTGATCGGGCCTGGTCAGAACACAAGCGACATTTTCCACATTGCTTTTTTGTGCTGGGCCGGAGTGT---T---AATGCACAAAGTGAATCTG-GTGTCTTGAGTTCTGATA----GGAAT-----------TTCCC--CAATTCAACAAAT--CCTCCAAGAAATCCAGCC-ATGGTGGATTATGAAGTACGGATCCTGACTTTTGGGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG +s monDom1.scaffold_18542 2099013 820 + 4454299 ATGAAG---ATTTTGTAGAGGAATTT------------AATAGATTAAAGACATTTGCTAATTTCCCAAGTAGTAGCC-CTATTTCCGCATCAACATTGGCGCGAGCAGGTTTCCTCTATACTGGTGAGGGAGATACTGTCAAGTGCTTTAGCTGTCATGCAGCTGTAGATAGATGGCAGTATGGAGACTCAGCAGTTGGAAGACATAGAAAAGTG-----------------ATGCCCAAACTGCAGATTTATTAATGGTTTTTAT---TTT---GAAAAAAATGCTACACGGTT---------------TCCAAATCCCATTATCCAAAACTG---TCAG-------TACA---GAGTTGAAAAT-TGTTCAAGGAATAG------------AAAT---------CACTTTGCTTTGGAGAGACCCTCTGAAACTCATGGGGAATATCTTTTGAGAACAGGCCAGGTCATTGATATGTCAGATACCATATACCCACGGAATCCTTCCATGTGTAGTGAAGAAGCTCGACTGAGATCTTTTCAGAATTGGCCAGACTATGCTCACCTTACCCCACAGGAGTTAGCAAGTGCTGGACTCTATTACATGGGCTTTGAGGATCAAGTGCAGTGCTTTTGTTGTGGGGGCAAATTAAAGAATTGGGAACCGTGTGATCGGGCAATGTCCGAACACAAGAGGCATTTCCCTAAGTGTTTTTTTGTCTTGGGACGGGATGTTGGT---AATACACGAATTGAAACTG-ATGTT---AGCTGTGATA----GGAGT-----------TGCCC--AAACCCTACCCAT--CTCCCAAGGAATCCAGCC-ATGGCGGATTATGAAGCACGACTCATTACCTTTGCAACATGGATATACTCGGTTAACAAGGAGCAGCTTGCAAAAGCTGGATTTTATGCTTTAG +s platypus.ENr324_9 31588 825 - 41000 ATGAAG---AATTTGCAGAAGAGCAT------------AACAGATTAAGAACTTTTGCTAATTTTCCAAGTACTAGCC-CTGTTTCTTCATCAACTCTGGCCCGAGCTGGTTTCCTTTATACGGGCGAAGAAGATGTCGTGCGATGCTTCAGTTGCCATGTAGCTGTAGATCGTTGGCAGTATGGTGACTCAGCAATTGGCAGGCACCGAAAAAT------------------TTCCCCCAACTGCAGATTTGTCAATGGATGTCAT---TTT---AAGAACTGTGCTCTGCCTTT---------------AGCAAATGCAAGTCTCCAAAACGG---TGAA-------CTCGGTCAAGTTGAAGAA-TGCCCAGGAAATCC------------AAGT---------CACCACGCTTTGGAAAGATCATCCGAAACTCATTCGGACTACCTTTTGAGAACGAGGCAGGTTGTCGACCTATCGGATACGGTATTCCCGAAGAACCCTGCCATGTGCAGCGAAGAAGCCAGACTAGAAACATTTCAGAATTGGCCCGAATATACCCTGTTATCCCCAGGGCAATTAGCTAGAGCTGGACTGTACTACTCAGGTATTGATGATCAAGTAGAATGCTTTTGTTGTGGTGGAAAGTTGAAAAACTGGGAGCCGTGCGATCGTCCGTGGTCAGAGCACAAACGGCATTTCCCAAAGTGCCTTTTTGTCTTGGGCCGGGATGT---TGGAAACATTGAAATTGAATCTG-ATAGCATCGCTTCCCAGA----GGAGT-----------TATTC--AAATTCAACTCAT--TTCCCGAGGAATCCGGCC-ATGGCAGAGTTTGAAGCCCGGATCCACACTTTTGAGACATGGACATACTCCATTGACAAGGAGCTGCTTGCAAGAGCAGGATTTTATACTCTAG +s galGal2.chr4 75226968 816 - 90634903 ACCAGG---AGTGGACACAGGAACAC------------TACCGACTAGGAACCTTTGTGGAGTTTCCCCATGATTGTC-CAGTTTCAGCATCAGCGCTAGCTCGAGCTGGCTTTGTTTATACTGGAGAAGGTGATAAAGTCAAGTGCTTCAGTTGCCATGTAACTGTTGAAGGATGGGAGCCTGGGGATTCTGCAATTGACAGACACAAAAACCT------------------TTCCCCAGATTGCAGATTTATTACTGGGTCTGCT---TTTTTGGAAAATAACG---------------------------TACATCCTCTTGTGCAGAGCCA---CCAG-------CATA---GAACTGAAAAT-GGCTC------CAG------------CAATTTGGCCCTCCCCTCTGCTCTGGAGGACTTGTCTGATGTGGAGGCAGATTACCTGTTGAGAACCAGGCAGGTTGTGGACATGTCCGATACTTTGTATCCTAAAAACCCTGCTATGTGCAGTGAAGAAGCCAGGCTGAAGTCCTTTCACAATTGGCCCCCCTATGGCCTATTGACGCCAAAGGAATTAGCTAGTGCAGGACTCTACTATACAGGTGTTGGTGATCAAGTTGCATGTTTCTGTTGCGGTGGAAAACTGAAAAACTGGGAACCTGGTGATCGAGCTTGGTCTGAGCACAAGAGGCATTTTCCCAAATGCTTTTTTGTCCTGGGTCGGGACGT---TGGAAATGTTTCAACTGATTCTATCTGTGCTGAGCT-TGGGA----GAAGC-----------TGTCT--AAA--CAACGAACAGCATCCAAGGAATCCATCC-ATGGCAGAATATGAGAGGCGGATACAAACATTTTTAGCTTGGATATACCCTGTTAACAAGGAACATCTTGCTGAAGCAGGGTTCTACAGCACAG +s xenTro1.scaffold_69 2110841 795 - 2695077 ACCAGA---ATTATTTTGAAGAGGAA------------GTCAGACTGGCGTCCTTTGCTAACTTCCCAAGTAGCTACC-CGGTCTCTGCTCCAGCACTAGCGCGGGCCGGCTTCTATTACACTGGAGATGGAGATCGAGTCAAGTGTTTTAGCTGCCTGGCTATGGTTGAAGGCTGGCAGCATGGAGACACGGCAATTGGCAAGCACCGGAAAAT------------------ATCCCCAAACTGTAAATTTATTAATGGCTTTAATAACTTA---CGAAGTGATTGTATCCTAAC---------------TCAAGTGCCTGTCATGCAGAATGGTTTTCAG-------AATT---CCGCTGAAGACTTGGCTGAGAGATCT------------AGTT-------------------------------CTGAGATTATGGCAGACTACTTGCTAAGGACTGGAAGAGTTGTCGATATGTCAACACCAAAATATCCCAGGCATATGGAAATGTGTAGTGAGGAAGCCCGACTGCAAACGTTTCAAAACTGGCCAGCCTATTCACCCTTAACACCAAAAGAGCTAGCCAATGCAGGTCTTTTTTATACAGGCATCAACGACCAAGTCAAATGCTTTTGCTGTGGTGGAAAACTAATGAACTGGGAACCTAGTGACAAAGCGTGGACAGAACACAAAAAACATTTTCCTGAATGCTACTTTGTTTTGGGCCGTGATGT---TGGCAATGTGGCTACCGAAGCCA-ATACACATGGTGGTAGGA----GAAGA-----------GGTTC--TGAGTTGGCCTGC--------------CCAGCC-ATGAACGACTACAATGCTCGTCTTGAGACCTTTTCATCATGGTCATTTCCAATTGACAAGGAAACACTCGCTAAAGCTGGATTTTATAGTATAG +s tetNig1.chr1 3638007 833 + 16827091 AGACGG---ATTCCGCCGAAGATTTTTCACTGATCAAGAGTCGTCTGGAATCGTTCC-GTGGCTCCAGCCTGGTGCAGCGGGTGCCGGCTGAAAGATTAGCTCGGGCTGGCTTCTACCTTGTCGGCCCATCCGATCGCGTTCGCTGTTTTAGCTGCCAGAAAACTGTGGAAAACTGGAGCCGAGAGGACAGACCTGTTGAGAGGCATAAGGAGGTGAGTCTGCTGAGTGTGGAATCTC---AATGTCAATTTAGCGTTGTATTCTTC---CTG---GAA----TTACTTTCTAACTTTCCTCATTGTTGTAGGTTTCTCCTGTT-TGCCAATTTC---TCAGCTGCATTTACG---GAACCAGACCC-CACCAGTTAATAGACGCCTCACTGGCTAAC---------AACTCTGCCTACAATGAAGAAGC------------------------------------AGTGGTGGAT------GAGTCCATTTATCCGGTGGCCCCTCATATGAAGAGTGAGAAAAGCCGGCTTCAGACCTTCTCCTCTTGGCCCTCGGCAGTGCCCGTGAGGCCTCAAGATCTGGCCCAAGCTGGCCTCTACTACCTGGGGCAGAACGACCAGGTGCAGTGTTTCTGCTGCGGGGGCATACTGGCCAACTGGGACGCCGGGGACTCAGCCTGGGGAGAACACAACAAACATTTCCCCTCCTGCTTTTTCATCCTGGGGCACGATGT---TGGCAACATA----------CCT-TTGCAG-GGGTCCGGAGAGGAGGAGAAGAGAGTTGTCCCACCTGCAGGTGCAGGTGCT---------GGTGTCCAC---ATGGGGACATTTGAGGAACGCCTGAGGAGCTTCGCTAACGTCCAGCACCCTGTAAACACGGAGAGGCTTGCGAGAGCCGGCTTCTACAGTAAAG +s danRer2.chr14 27993061 738 - 59999824 AATCTGACAATGTGGCAGCTGATTGGTCAGTCATGAAGAATCGGGTGAACTCTTTTCAACGTTTTCCATATTCTGAAG-ACATTTCAGCACAGCGGCTGGCCCGAGCGGGCTTTTACTTCACAGGCGAGGGGGACAGGGTGCAATGTTTCAGCTGCAGTGCCACTGTGCAGAACTGGAACAGAGGTGACACCCCATTGGAGAGACAT------------------------------------------------------------------------------------CAACT---------------GGCATCTCCGGAC-TGCAGGTTCC---TCAGCTGTGCTCATG---GTATGAGAAAC-TCTAATTCGAT---------------CCAG---------AGTCCTGATTACGATGAAGAGGCCGAGA---ATAGAGAGTTCCTCCTCCGCACGGGAGAGGTGGTGGAC------GAGTCCATGTATCCTGTTGTACCGCACATGAAGAGTGAAGAAGCGCGACTGAGTACTTTCAACAACTGGCCAGCAGACTCTCCAGTTCGGCCTGAAGACCTGGCAGAAGCAGGGATGTATTACATTGGGATAGACGACAATGTGCAGTGCTTCTGTTGCGGAGGGGGTCTGAGTGGATGGGAGCAAGGCGACGATCCTTGGAGTGAACATGCGAAGTACTACTCAAACTGCTTCTTCTTCTTGGGCCACAATGT---GGGCAACGTC----------CCC-CT--------------------GACAA-----------CACCT--AGGC-CAAGGGCT---------AATGTCCACCCTACAGACACTTTTGAGGGGCGTCTTGATAGCTTCAAAGGCAGACAGCATCCCATTGACCCTGAGAGATTGGCCAGAGCTGGTTTCTACAGCACAG + +a score=28417.0 +s hg17.chrX 2175291 9 - 154824264 C---------TAGAATAG +s panTro1.chrX 2209848 9 - 160174553 C---------TAGAATAG +s baboon.ENm006_1 784129 9 - 802484 C---------TAGAATAG +s rheMac1.SCAFFOLD30444 14232 9 - 57263 C---------TAGAATAG +s marmoset.ENm006_1 671327 9 - 677071 C---------TAGAATAG +s galago.ENm006_1 940013 9 - 952237 C---------TAGAATAG +s rn3.chrX 914133 9 - 160775580 C---------TAGAATAG +s mm6.chrX 95173281 9 - 163688980 C---------TAGAATAG +s canFam1.chrX 2147657 9 - 126913094 C---------TAGAGTAG +s rfbat.ENm006_1 1004170 9 - 1015308 C---------TGGAGTAG +s shrew.ENm006_31 22401 9 - 74035 C---------TGGAGTAG +s tenrec.ENm006_4 11684 9 + 15794 C---------TGGAATAG +s monDom1.scaffold_3472 66704 9 + 94349 C---------TGGAGTAG +s xenTro1.scaffold_317 111095 9 + 1352153 G---------TTGAATAG +s tetNig1.chr19 1088504 9 - 5206847 T---------TCGTCTAG +s fr1.chrUn 19892233 17 + 349519338 CGGCCACCAATGGGGCG- +s danRer2.chr23 42356636 9 - 42830282 T---------CCGCCCAG + +a score=1791044.0 +s hg17.chrX 2175068 223 - 154824264 TGACAACGAGGAGAAGGCCTTTGGCA-GC--------AGCCAGCCATCGCTCAACGGGGACATCAAGCCCCTGGGCAGTGACGACAGCCTGGCCGATTATGGGGGCAG---CGTGGATGTTCAGTTCAACGAGGATGGTTCGTTCATTGGCCAGTACAGTGGCAAGAAGGAGAAGGAGGCGGCAGGGGGCA-ATGACAGCTCAGGGGCCACTTCCCCCATCAACCCTGCC---G-TGGCC +s panTro1.chrX 2209625 223 - 160174553 TGACAACGAGGAGAAGGCCTTTGGCA-GC--------AGCCAGCCATCGCTCAACGGGGACATCAAGCCCCTGGGCAGTGACGACAGCCTGGCCGATTATGGGGGCAG---CGTGGATGTTCAGTTCAACGAGGATGGTTCGTTCATTGGCCAGTACAGTGGCAAGAAGGAGAAGGAGGCGGCAGGGGGCA-ATGACAGCTCAGGGGCCACCTCCCCCATCAACCCTGCC---G-TGGCC +s baboon.ENm006_1 783906 223 - 802484 TGACAACGAGGAGAAGGCCTTCGGCA-GC--------AGCCAACCATCGCTCAATGGGGACATTAAGCCCCTGGGCAGTGACGACAGCCTGGCCGATTATGGGGGAAG---CGTGGATGTTCAGTTCAACGAGGATGGCTCCTTCATTGGCCAGTATAGTGGCAAGAAGGAGAAGGAAGCGGCAGGGGGCA-ACGACAGCTCAGGGGCCACTTCCCCCATCAACCCTGCC---G-TGGCC +s rheMac1.SCAFFOLD30444 14009 223 - 57263 TGACAACGAGGAGAAGGCCTTCGGCA-GC--------AGCCAACCATCGCTCAATGGGGACATTAAGCCCCTGGGCAGTGACGACAGCCTGGCCGATTATGGGGGAAG---CGTGGATGTTCAGTTCAACGAGGATGGCTCCTTCATTGGCCAGTATAGTGGCAAGAAGGAGAAGGAGGCGGCAGGGGGCA-ACGACAGCTCAGGGGCCACTTCTCCCATCAACCCTGCC---G-TGGCC +s marmoset.ENm006_1 671104 223 - 677071 TGACAATGAGGAGAAGGCTTTCGGCA-GC--------AGCCAGCCCTCGCTCAATGGAGACATCAAGCCCCTGGGCAGTGATGACAGCCTGGCCGATTATGGGGGCAG---TGTGGATGTTCAGTTCAATGAGGATGGCTCCTTCATCGGCCAGTACAGTGGCAAGAAGGAGAAGGAGGTGGCAGGGGGCA-ACGACAGCTCAGGGGCTACCTCCCCCATCAACCCTGCT---G-TGGCC +s galago.ENm006_1 939790 223 - 952237 TGACAACGAGGAGAAGGCCTTTGGCA-GT--------AGCCAGCCATCTCTCAATGGAGACATCAAACCCCTGGGTAGTGATGACAGCCTGGCTGATTACGGGGGAAG---CGTGGACGTGCAGTTCAACGAGGATGGCTCCTTCATCGGCCAATACAGTGGCAAGAAGGAGAAGGAGGCAGCAGGGGGCA-ATGACAGCTCAGGGGCCACCTCTCCCATCAACCCTGCC---G-TGGCC +s rn3.chrX 913910 223 - 160775580 TGACAATGAAGAGAAGGCCTTCGGCA-GC--------AGCCAGCCATCTCTCAATGGAGACATCAAACCCCTAGGCAGTGATGACAGTCTGGCTGATTATGGGGGCAG---TGTGGATGTCCAGTTCAATGAGGATGGCTCTTTCATCGGCCAATACAGTGGCAAAAAAGAGAAGGAGGCAGCGGGAGGCA-ATGACAGCTCAGGGGCTACCTCTCCTATCAATCCTGCA---G-TAGCC +s mm6.chrX 95173058 223 - 163688980 TGACAATGAAGAGAAGGCCTTTGGCA-GC--------AGCCAGCCATCTCTCAACGGAGACATCAAACCCCTAGGCAGTGATGACAGCCTGGCTGATTATGGGGGCAG---TGTGGACGTCCAGTTCAATGAGGATGGCTCTTTCATCGGCCAGTACAGTGGCAAGAAAGAGAAGGAGGCAGCAGGAGGCA-ATGACAGTTCAGGGGCTACCTCTCCTATCAATCCTGCA---G-TAGCC +s canFam1.chrX 2147434 223 - 126913094 TGACAACGAGGAGAAGGCCTTTGGCA-GC--------AGCCAGCCGTCCCTCAATGGGGACATCAAGCCCCTGGGCAGTGACGACAGCCTGGCCGACTACGGGGGCAG---CGTGGACGTGCAGTTCAACGAGGACGGCTCCTTCATCGGCCAGTACAGCGGCAAGAAGGAGAAGGAGGCAGCAGGCGGCA-ACGACAGCTCAGGGGCCGCCTCCCCCATCAACCCTGCC---G-GGGCC +s rfbat.ENm006_1 1003947 223 - 1015308 TGACAACGAGGAAAAGGCCTTCGGCA-GC--------AGCCAGCCATCTCTCAATGGAGACATCAAGCCCCTGGGCAGTGATGATAGCCTGGCTGACTATGGGGGCAG---CGTGGATGTCCAGTTCAATGAGGACGGCTCTTTCATTGGCCAGTACAGTGGCAAGAAGGAGAAGGAGGCAGCAGGAGGCA-ACGACAGCTCAGGAGCTGCCTCCCCCATCAACCCTGCA---G-GGACC +s shrew.ENm006_31 22178 223 - 74035 TGACAACGAGGAGAAAGGCTTTGGCA-GC--------AGCCAGCCGTCGCTCAATGGGGACATCAAGCCGCTGGGCAGTGATGACAGCCTGGCCGACTATGGCGGCAG---CGTGGACGTGCAGTTCAACGAGGATGGCTCGTTCATCGGCCAGTACAGCGGCAAGAAGGAGAAGGAGGCAGCAGGGGGCC-ATGACAGCTCGGGGGCCGCCTCCCCCGTCAACCCCTCG---G-GGGCT +s tenrec.ENm006_4 11461 223 + 15794 TGACAACGAGGAGAAGGCCTTTGGCA-GC--------AGCCAGCCATCCCTCAATGGGGACATTAAACCCCTGGGGAGTGATGACAGCCTGGCCGATTATGGGGGCAG---CGTGGACGTCCAGTTCAACGAGGATGGCTCCTTCATCGGCCAGTACAGTGGCAAGAAAGAGAAGGAAGCTGCAGGTGGCA-ATGACAGCTCAGGGGCCACCTCCCCCATCAACCCTGCC---G-TGACC +s monDom1.scaffold_3472 66478 226 + 94349 TGACAACGAAGAAAAAGGCTTCGGGA-GC--------AGCCAGCCCTCCTTGAATGGGGACATCAAGCCCCTTGGCAGTGATGACAGCCTGGCCGACTATGGCGGTAG---CGTGGACGTCCAGTTCAATGAGGATGGCTCCTTCATCGGCCAGTACAGTGGCAAGAAGGAGAAAGAGGCCACTGGGGGCA-ATGACAGCTCCGGAACCACTTCCCCCATCAACCCTACCCACG-TGACC +s xenTro1.scaffold_317 110872 223 + 1352153 TGACAATGACGAGAAGCCTTTTACTA-GC--------AGTCAGCCCTCCCTCAATGGGGAGATCAAGCAACTAGGCAGTGACGACAGCCTGGCCGACTATGGTGGTAG---CGTGGATGTCCAGTTCAATGAAGATGGCTCGTTCATTGGCCAGTACAGTGGCAAAAAGGAGAAGGAGCCAACAGGGGGCA-ATGAGAGCTCTGGAGCAACCTCTCCGGTCAACCCCAAC---G-TTGCA +s tetNig1.chr19 1088278 226 - 5206847 TGACATGGAGGA-----CCACAAGCC-GCTAAAGGGGAGTCGGACACCGTCCAACGGGACGGTTCGCCGAGACGAGAGCTACGACAGCCTGGTGGACTACGGGGAGGG---CGGGGACGGTCAGTTCAACGAAGACGGCTCCTTCATCGGCCAGTACAGCGGCAAGAAAGAGAGGGACACGCACGAAGGCA-ACGAAAGTTCGGAGGCGCCGTCGCCCGTCAATGCCATG---A-ACTCC +s fr1.chrUn 19892015 215 + 349519338 TGACCTCGAAGAGAAGCGC----ACA-GCC-------AGCCAGCCTTCGCTGGGCGAGGACAGCAAGC---TGTGCAGCGAGGACAACCTGGACTTCAACGGCAGCAGCGCCGTAACCACGGAGCTCAACATGGACGAGTCCCTGGCCAGCCAGTTCAGCCGCCACAGCGAGGGG-------CCGGAGCCGTTCCACGGCGTACCGGACAACTCCCCCCTCAACCCTGCC---GCCAACC +s danRer2.chr23 42356435 201 - 42830282 TGATATGGAGAAGTGCTCCATCAGCCAGCCGTCGGGGTGCGAGA---------------------GCAAGCGCAGCAGCAACGACAGTCTGGCGGATTACGGGGACAG---CGTGGACATCCAGTTCAATGAGGACGGCTCCTTCATCGGGCAGTACAGCGGTCGAAGGGA--------TCCACGCGGGCA--CGACAGCTCTGGCGCCGTGTCGCCGGTCAACCCCA-A---C-ATGCC + +a score=86525.0 +s hg17.chrX 152691446 25 + 154824264 ATGCTCATGGCGTCCACC--------ACTTCCG +s baboon.ENm006_1 61915 25 + 802484 ATGCTCATGACGTTCACC--------ACTTCCG +s rheMac1.SCAFFOLD28471 4143 25 - 6625 ATGCTCAGGACGTTCACC--------ACTTCCG +s marmoset.ENm006_1 44635 25 + 677071 ATGCTCATGGCATCCACC--------ACCTCTG +s rn3.chrX 159897295 25 + 160775580 ATGCTCCTGGTGTCTACC--------GTGTCCG +s mm6.chrX 68552899 25 + 163688980 ATGATCCTGGTGTCTACC--------ACGTCTG +s rabbit.ENm006_12 6345 23 - 8566 GTGCTCATGGCGTCCACC--------GCTTC-- +s canFam1.chrX 124808548 25 + 126913094 ATGCTCCTGGCATCCACC--------ACCTCGG +s rfbat.ENm006_1 59186 23 + 1015308 --GCTCATGGCTTCTTCC--------ACCTCCG +s armadillo.ENm006_1 11265 25 + 637865 ATGCGCATGGCGCCCACC--------CCCTCAG +s platypus.ENm006_33 10745 33 - 24358 ctgtccctcgcccccaccccctaccaactcccc + +a score=1335.0 +s hg17.chrX 2130203 32 - 154824264 AGGGCCTAGACACGACC-CCCAAGCC-----------ACACTGA +s panTro1.chrX 2163329 32 - 160174553 AGGGCCTAGACACGACC-CCCAAGCC-----------ACACTGA +s baboon.ENm006_1 737961 32 - 802484 AGGGCCTGGACACAACC-CCCAAGCC-----------ACACTGA +s marmoset.ENm006_1 629917 32 - 677071 AGGGTCTGGACTCAACC-CCCAAGCC-----------ACACTGA +s rn3.chrX 875778 32 - 160775580 AGGGTCCAGATTCAACT-CGCAAGCC-----------AGTCTGA +s mm6.chrX 95133557 32 - 163688980 AGGGTCCAGATTCAACT-CGCAAGCC-----------AGTCTGA +s rabbit.ENm006_53 67761 32 + 95848 AGGGCCCGGACTCCATC-TTCAAGCC-----------GCACTGA +s canFam1.chrX 2102000 29 - 126913094 AGGGCCTGGACTCTCCA-CTTAAG--------------CACTGA +s rfbat.ENm006_1 953411 32 - 1015308 AAGGCCTGGACTCTCCC-TTCAAGTC-----------ACACTGA +s shrew.ENm006_28 13170 32 - 17919 AAGGCCTGGACCCCACA-CTGAAGCC-----------ACACTGA +s armadillo.ENm006_1 624165 26 - 637865 CGGGGCCAGAC-------CTCAAGCC-----------GCACTGA +s monDom1.scaffold_4966 7781 31 - 16700 -TGCCCCTGCTATTTCT-TCACAGGT-----------GTATGGG +s platypus.ENm006_33 2105 44 + 24358 GAACCCTAGCCACCCCAGCCCAGGCCCTCCCAACTCAATTCTGG + +a score=185517.0 +s hg17.chrX 2130122 81 - 154824264 C--------GCCCAGCAGCCGCCTGGGC---AGGAACAAAGGCTTCT---------CCCGGGGCCCTG------GGGCCCCAGCCTCACCCTCAGCTTCCCACCCCC +s panTro1.chrX 2163248 81 - 160174553 C--------GCCCAGCAGCCGCCTGGGC---AGGAACAAAGGCTTCT---------CCCGGGGCCCTG------GGGCCCCAGCCTCACCCTCAGCTTCCCACCCCC +s baboon.ENm006_1 737880 81 - 802484 C--------GGCCGGCAGCCGCCTGGGC---AAGAACAAAGGCTTCT---------CCCGGGGCCCTG------GGGCCCCAGCCTCACCCTCAGCATCCCACCCCC +s marmoset.ENm006_1 629836 81 - 677071 C--------GGTCAGCAGCCGCCTGGGA---AGGAACAAAGGCTTCT---------CCCAGGACCCTG------GGGCCCCAGCCTCACTCTCAGTGTCCCACCCCC +s rn3.chrX 875697 81 - 160775580 T--------GGCCTGCAGCAGCTTCAGC---AAAAACAAAGTCTTCT---------CCCGGGGACCTG------GGGCTCCAGTTTCCCCCTCAGTTTCCCATCCCC +s mm6.chrX 95133476 81 - 163688980 T--------GGCCTGCAGCAGCATCAGC---AAAAACAAAGTCTTCT---------CCCGGGGACCTG------GGGCTCCAATTTCCCCCTCAACCTCCCATCCCC +s rabbit.ENm006_53 67683 78 + 95848 ---------GGACAGCAGCCGCCTAGGC---AGGAGCAAAG-CTTAT---------CCCGTG-CCCCG------GGGCTGCGACGGCCTCCTCAGAGTCCCATCCCC +s canFam1.chrX 2101919 81 - 126913094 C--------GGCCTCCGGCCGCCTGGGT---AGGAGCAAAGGCTTCT---------CCCGCGGCTCCG------GGGCCCCGGCGTCCCCCTCGGCGTCCCATCCCC +s rfbat.ENm006_1 953330 81 - 1015308 C--------AGGTTGCAGTCGCCTCGGC---AAGAACAAAGGCTTCT---------CCCGAGGCCCTG------GGGCCCCGGCCTCACCCTCAGCATCGCACCCCC +s shrew.ENm006_28 13110 60 - 17919 C--------GGTGTGTACCCGACAGATG---AAGACCACAGGCTTTT---------CTCGGGGTGTGG------AG---------------------TTGCACCCCC +s armadillo.ENm006_1 624084 81 - 637865 T--------GGCCCCCGGCCGCCACGGC---CGGCACAAAGGCTTCT---------TCCGAAGTCCCG------GGAGCCCGGCCTCCCCCTCAGCTGCCCGACCCC +s monDom1.scaffold_4966 7699 82 - 16700 CCCCT----GGGACCCTCCCGAACTGGG---AAGAACAAGGTTTTCT---------CTAGAGGCGCTG------GGGGTCATGACCAATTCTGAGCTCCTCTCC--- +s platypus.ENm006_33 2012 92 + 24358 T--------TCCCAGGAGCAGCTTCGGCGTGAGGACCAAGGGCCTCTTCAAAGCCACTGGGGGCAACG------GGGCCCAGGACTGACCCTGCGGGGCACTCA-CC +s xenTro1.scaffold_101 953994 94 + 2407444 CTCCGATCAATCGCGTGGAAGCCCAGCA---GGGAAAAAAGGAGCTG---------CAGGAAGAACTGTGTTTGGGACCCGGAGATGAACTTCAGCTACTGATT-TC + +a score=27424.0 +s hg17.chrX 2130105 17 - 154824264 CCGAAGCCCAAA-----GGCCC +s panTro1.chrX 2163231 17 - 160174553 CCGAAGCCCAAA-----GGCCC +s baboon.ENm006_1 737863 17 - 802484 CCGAAGCCCAAA-----GGCAC +s marmoset.ENm006_1 629819 17 - 677071 CCGAAGCCCAAA-----GGCCC +s rn3.chrX 875680 17 - 160775580 TCGAAACCTGAA-----GCCCC +s mm6.chrX 95133465 11 - 163688980 TC------TGAC-----GCCCC +s rabbit.ENm006_53 67667 16 + 95848 -CGCAGCCAAAA-----GCAGA +s canFam1.chrX 2101902 17 - 126913094 cTGCAGCCTGAA-----GCCTC +s rfbat.ENm006_1 953313 17 - 1015308 CCGCAGCCCAAA-----GCCTC +s shrew.ENm006_28 13093 17 - 17919 CCGCAGCCCAAA-----GCTTC +s armadillo.ENm006_1 624067 17 - 637865 CCGCAGCCCACA-----GCCTC +s monDom1.scaffold_4966 7679 17 - 16700 CTGCCGCCCACA-----GCTGG +s platypus.ENm006_33 1989 17 + 24358 CCCAGGCAAAAA-----GGGTT +s xenTro1.scaffold_101 953965 22 + 2407444 CGGGAACTTAAACAAGTGACAC + +a score=49886.0 +s hg17.chrX 2130082 23 - 154824264 ACCACCTCTCCCA--GTCCTGGGCC +s panTro1.chrX 2163208 23 - 160174553 ACCACCTCTCCCA--GTCCTGGGCC +s baboon.ENm006_1 737840 23 - 802484 GCCACCTCTCCCA--GCCCTGGGCC +s marmoset.ENm006_1 629796 23 - 677071 GTCACCTCTCCCA--GCCCTGGGTC +s galago.ENm006_1 899441 23 - 952237 GCCACCTCCCCCA--GCCCAGGGTC +s rn3.chrX 875657 23 - 160775580 ACAGCCTCCCCCA--GTCTAGGAAC +s mm6.chrX 95133442 23 - 163688980 ACAGCCTCCCCGA--GTCTAGGAAC +s rabbit.ENm006_53 67644 23 + 95848 GCCCCCCTTGTCG--GCCCTTGGGC +s canFam1.chrX 2101879 23 - 126913094 accggctcccccg--gccccgggcc +s rfbat.ENm006_1 953290 23 - 1015308 CCCGGCTCCCCCA--GCCCTGGGTC +s shrew.ENm006_28 13070 23 - 17919 AGCGATGCTCCTG--GCACCGGGCC +s armadillo.ENm006_1 624044 23 - 637865 CCCAGCTCCCCCA--GCCCCGGGCC +s monDom1.scaffold_4966 7656 23 - 16700 --GAGCTCCCCTGAGGCCTCCTGCT +s platypus.ENm006_33 1966 23 + 24358 CCAGAGTCACCCC--AACCTGGAGC +s xenTro1.scaffold_101 953938 23 + 2407444 GTGGACCCTGGTA--AAGCAGGAAA + +a score=406800.0 +s hg17.chrX 2130001 81 - 154824264 GCTGTGGCACAGAACATGGACTCTGTGTTTAAGGAGCTCTTGGGAAAGACCTCTGTCCGCCA--------GGGCCTTGGGC-----------CAGCATCT +s panTro1.chrX 2163127 81 - 160174553 GCTGTGGCACAGAACATGGACTCTGTGTTTAAGGAGCTCTTGGGAAAGACCTCTGTCCGCCA--------GGGCCTTGGGC-----------CAGCATCT +s baboon.ENm006_1 737759 81 - 802484 GCCGTGGCACAGAACATGGACTCTGTGTTTAAGGAGCTCTTGGGAAAGACCTCTGTCCGCCA--------GGGCCTCGGGC-----------CAGCATCT +s marmoset.ENm006_1 629715 81 - 677071 GCTGTGGCGCAGAACATGGGCTCTGTGTTTAAGGAGCTCTTGGGAAAGGCCTCCGCCCGCCA--------GGGCCTTGGGC-----------CAGCACCT +s galago.ENm006_1 899360 81 - 952237 GCTGTGGCGCAGAACATGGACTCCGTGTTTCAGGAGCTCTTGGGAAAGACGGCTATTCGCCA--------GGGCCTCAGGC-----------CAGTGTCT +s rn3.chrX 875576 81 - 160775580 GCTGTGGCGCAGAACATGGATTCTGTGTTTAAGGAGCTCTTGGGAAAGGCTGCTGTCCGCCA--------GGGCCATGGGC-----------TAGCATCT +s mm6.chrX 95133361 81 - 163688980 GCTGTGGCACAGAACATGAATTCTGTGTTTAAGGAGCTCTTGGGAAAGACTGCTGTCCGCCA--------GGGCCATGGGT-----------TAGCATCT +s canFam1.chrX 2101798 81 - 126913094 GCTGTGGCACAGACCATGGATTCCGTGTTTAAGGAGCTCCTGGGAAAGACCTccgcccgcca--------gggcgcggggc-----------ccgcgtcc +s rfbat.ENm006_1 953209 81 - 1015308 GCTGTGGCACAGACTATGGATTCGGTCTTTAAGGAGCTCTTGGGAAAGACCGCTGTCCGCCA--------GGGCCTCGGGC-----------CAGCGTCC +s shrew.ENm006_28 12998 72 - 17919 GCCGTGGCCCAGACCATGGGCTCCGTGTTCAAGGAGCTCTTGGGGAAGACC---GCCCGCCA--------GGGTCTTGGGC-----------CC------ +s armadillo.ENm006_1 623963 81 - 637865 GCCGTGGCGCAGACCATGGACTCCGTGTTTAAGGAGCTCTTGGGGAAGACGGCTGGCCGCCA--------GGGCCTGGGGC-----------CAGCGTCC +s monDom1.scaffold_4966 7567 89 - 16700 AGCGTGGCCCAGAAGATGGAATCTGTCTTTAAGGAGCTCTTGGGGAAGGCCCATACCAGGCACCTGCCGAAGACCTCAGAG-----------ATACTTTT +s platypus.ENm006_33 1876 90 + 24358 GACATCACCAAGACCATGAACTACGTGTTTAAGGAGCTTATGGAGAAGACCA--GCCTGCGG--------CAAACTGGGGCGGATGATCCCCCGGCCTCT +s xenTro1.scaffold_101 953857 81 + 2407444 AATGTGACAAAGAACATGGACAGCGTGTTCAAAGAGCTGCTTGGAAAAACTGCTCTAAAGCA--------GGTGCATTTGG-----------AAGATCCT +