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diff rnaseq/cutadapt/test-data/perm_in3.fastqsanger @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/perm_in3.fastqsanger	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,396 @@
+@HWI-EAS91_1_30788AAXX:1:1:1513:715/1
+GTTTTTTGGGCATAGATGTTTAGTTGTGGTAGTCAG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIDI?II-+I
+@HWI-EAS91_1_30788AAXX:1:1:1698:516/1
+GTTGTTAGGGAGAGGAGTTGAACCTCTGAGTGTAAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIII5IIIII9I
+@HWI-EAS91_1_30788AAXX:1:1:1491:637/1
+GCTAGCAGGATGGATCCGGCAATTGGGGCTTCTACA
++
+IIIIIII""IIIIIIIIIIIIFIIIIIIIIIIIABD
+@HWI-EAS91_1_30788AAXX:1:1:1711:249/1
+GGAAGTAGGGGCCTGCGTTCAGGCGTTCTGTTTGGT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1634:211/1
+GAAGCAGGGGCTTGATACTGACACTTCGTCGACGTA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIII9IIDF
+@HWI-EAS91_1_30788AAXX:1:1:1218:141/1
+GTTAAATATTGGGAGTGGGGGGGGGGGGGAGTTTTG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIII1IIII+I
+@HWI-EAS91_1_30788AAXX:1:1:1398:854/1
+GTGAAGAGGAGGGGATTTATTAGTACGGGAAGGGTG
++
+IIIIIII""IIIIIBIIIIIIIIIIIIIIA=IIIII
+@HWI-EAS91_1_30788AAXX:1:1:1310:991/1
+GAATAGTGGTAGTATTATTCCTTCTAGGCATAGGAG
++
+IIIIIII""IIIIIIIIII4IIIIIIDII:IEI2:I
+@HWI-EAS91_1_30788AAXX:1:1:1716:413/1
+GATCCAAGGCTTTATCAACACCTATTCTGATTCTTC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1630:59/1
+GGAGCGGGGGGTTGGTAAGGTTGGGGTCGAGTATGA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIII;IIHIIF
+@HWI-EAS91_1_30788AAXX:1:1:1601:805/1
+GAAAACAGGAAAACAATCCAGTCACTTACCCTATGC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIII@III
+@HWI-EAS91_1_30788AAXX:1:1:1663:724/1
+GTTTGCCGGCGCCATCCTACGCTCCATTCCCAACAA
++
+IIIIIII""IIII8IIIIIIHIIII6IIIII1CI=3
+@HWI-EAS91_1_30788AAXX:1:1:1454:975/1
+GCTAGGCGGGAGTGGTAAAAGGCTCAGAAGAAGCCA
++
+IIIIIII""IIIIIIIIIIIIIIIIEIG;IIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1461:255/1
+GTACACCGGCGCCTGAGCCCTACTAATAACTCTCAT
++
+IIIIIII""IIIIII9IIIIIIEI(II9.I4III,I
+@HWI-EAS91_1_30788AAXX:1:1:1775:764/1
+GCATCCCGGTAGATCTAATTTTCTAAATCTGTCAAC
++
+IIIIIII""III@IIII+IIIIII8H8IIIIIIICI
+@HWI-EAS91_1_30788AAXX:1:1:1269:520/1
+GGAGTATGGAATAAGTGATTTTAGATCGGTTTGTCG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1303:1162/1
+GAGCAAGGGCAGGAGGAGGAGTCCTAGGATGTCTTT
++
+IIIIIII""IIIIFII4*IGIAI(IAII49',3I6I
+@HWI-EAS91_1_30788AAXX:1:1:1090:409/1
+GTTTGTTGGGAATGGAGCGTAGGATGGCGTAGGCAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIII:IIA8I
+@HWI-EAS91_1_30788AAXX:1:1:1336:1000/1
+GGTAAATGGGAAATATTAAGTTTCTGTTTCTAGATC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIII9II
+@HWI-EAS91_1_30788AAXX:1:1:1199:1376/1
+GTTTTCTGGAAAACCTTCACCTATTTATGGGGGTTT
++
+IIIIIII""IIIIIIIIIIIII;III3IIG&:/III
+@HWI-EAS91_1_30788AAXX:1:1:1598:1148/1
+GATCAATGGTTTGGATCAATAAGTGATTATATATTT
++
+IIIIIII""IIIIIDIIIIII?IIICII=IHIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1723:1459/1
+GAAACCCGGACGTTTGGATGGGCCCGGAGCGAGGAT
++
+IIIIIII""IIIIIIIIDIIIIIIIII9HII-II=I
+@HWI-EAS91_1_30788AAXX:1:1:1442:1346/1
+TATCAAGGGGCTGCTTCGAATCCGAAGTGGTGGCTG
++
+IIIIIII""IIIIIDIIIII1I(I4II<?<-II*,&
+@HWI-EAS91_1_30788AAXX:1:1:850:117/1
+GTATGACGGTAAAGAAAATTATTACGAATGCATGGG
++
+IIIIIII""IIIIIIEIEIIIIIIIIEBIDD9I;:?
+@HWI-EAS91_1_30788AAXX:1:1:795:325/1
+GGGTACTGGGAAGTGGAATGGTGTGAGTCCAAGTTT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIII65IIII
+@HWI-EAS91_1_30788AAXX:1:1:873:453/1
+GAGTAGGGGGATTGCTAGAGTTACTTCGTATGAGAT
++
+IIIIIII""IIIIIIIIIIIIIIIII@IIIIIII=I
+@HWI-EAS91_1_30788AAXX:1:1:1285:1334/1
+GATATGGGGTCTGGAATAGGATTGCGCTGTTATCCC
++
+IIIIIII""IIIIIBIIGIIIIIIIIII8IIIII8I
+@HWI-EAS91_1_30788AAXX:1:1:905:406/1
+GAAAAGTGGTAGGCTATATGCAACTTCGCAAAGGAC
++
+IIIIIII""IIIIIIIIBIIIIBIIII=I@96D2*I
+@HWI-EAS91_1_30788AAXX:1:1:1774:595/1
+TTTAGGTGGGATGTGGGGATCATGTAGGAGTCAAAG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIEI
+@HWI-EAS91_1_30788AAXX:1:1:1694:931/1
+TTAAATTGGCATTAGAATTGAGTAGTTTTTAGGTAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIH,III
+@HWI-EAS91_1_30788AAXX:1:1:1092:1151/1
+GAGAGTTGGCTGATTTAGGCGCCCAGGGATAGCGTC
++
+IIIIIII""IIIIIIIIIII5III>IIIII6@III5
+@HWI-EAS91_1_30788AAXX:1:1:803:557/1
+GGTGTGTGGGCGCTTCATGGCCTGATTCAATTAAGC
++
+IIIIIII""IIIIIIIIIIIIIII<IIII?III406
+@HWI-EAS91_1_30788AAXX:1:1:1315:1200/1
+TAGTTTTGGGGGGTTTTCTTCAAAACCTTCACCTAT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIII;I
+@HWI-EAS91_1_30788AAXX:1:1:765:358/1
+GGTGTTTGGATGAGGACGGCTACGATTACTAGGGCT
++
+IIIIIII""IIIIIIIIIIIIDIIAII4@I0D='1I
+@HWI-EAS91_1_30788AAXX:1:1:1425:1167/1
+GACCTTAGGTGTAGGACATGGTGTAATTCGGTAGCA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIII(%II+IG
+@HWI-EAS91_1_30788AAXX:1:1:1775:635/1
+AATAGCCGGATAGCTAGAAGTAAGGTTGAGTTAAAG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIBI
+@HWI-EAS91_1_30788AAXX:1:1:1433:749/1
+GACTATGGGTGCTATTATACATGCTAGTCATAGGAA
++
+IIIIIII""IIIIIIIIIIIFIIIIICIIIIB/I9E
+@HWI-EAS91_1_30788AAXX:1:1:798:247/1
+GGAGATTGGAAAGTAGTATGCTTAGGGTAAGGGTGA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1249:1238/1
+TATTGTTGGGGTAGCGAAAGAGGCGAATAGATTTTC
++
+IIIIIII""IIIIIIIIIIIBIIIICDIII7IIII@
+@HWI-EAS91_1_30788AAXX:1:1:1043:1104/1
+GGAAGGGGGAATAGGAGGGCAATTTCTAAGTCGAAT
++
+II&IIII""IIIIIIDIIIII;IFI<I0II.IIIC,
+@HWI-EAS91_1_30788AAXX:1:1:1655:1058/1
+AAAAATCGGCTTTACAATTATATTCGTAGGGGTAAA
++
+IIIIIII""IIIIIIIIIIIIIIIIFIII6AIIIGI
+@HWI-EAS91_1_30788AAXX:1:1:1764:1403/1
+TGATGAAGGGTTTGAGGGGGCTGGTAGGTCAATAAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIBIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1632:34/1
+AGGATAGGGGCTATCCGTTGGTCTTAGGAACCAAAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIFIIIH:6I
+@HWI-EAS91_1_30788AAXX:1:1:1367:1208/1
+GACACGTGGCACTTCCAATCATACTATCCAGCATCC
++
+IIIIIII""IIIIIIII:IIII8IIEIIII-IAIII
+@HWI-EAS91_1_30788AAXX:1:1:1778:108/1
+AATACACGGACCATATCAACAGCATTAAACCTTCAT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIII@I
+@HWI-EAS91_1_30788AAXX:1:1:1152:1115/1
+GTAGTATGGCGTAGCCTCCTAGTTTTAGTAGAATGG
++
+7IIIIII""IIIIIIIIIII.68IIIDII=7IIIA'
+@HWI-EAS91_1_30788AAXX:1:1:1165:1121/1
+ATACTCAGGTCATTCTAGTCCTTTTTGGGTTCATTC
++
+IIIIIII""IIIIIIIIIIIIIIIII22?IIIIIIA
+@HWI-EAS91_1_30788AAXX:1:1:1500:55/1
+ATAGAGAGGAGTGCAACTAAGAGTGGGAGGGAACCT
++
+IIIIIII""IIIIIIIIIIFIIIIIIICIII<IIII
+@HWI-EAS91_1_30788AAXX:1:1:1142:1196/1
+TCATTTTGGTACCACTCGCAAGCACCATCGAAAACA
++
+IIIIIII""IIIIIIIIIIIIIIIII@I=I79I6II
+@HWI-EAS91_1_30788AAXX:1:1:1693:757/1
+AAATTATGGGTTAAACCCCTATATACCTCTATGGCC
++
+IIIIIII""IIIIIIIIIIIIIBIDIIIII0II-IG
+@HWI-EAS91_1_30788AAXX:1:1:1364:1053/1
+TTATTCAGGTGGGTATGAATCCTGATAGTGGGGGGA
++
+IIIIIII""IIIIIIIIIIIIIIIII?.I31G&4=5
+@HWI-EAS91_1_30788AAXX:1:1:1450:1443/1
+GTAAAAAGGTGCTCCAAGGCCTATTCATCACAATTT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIEIB8III
+@HWI-EAS91_1_30788AAXX:1:1:1701:1298/1
+TAGTAGAGGCCGCGTCCTACGTGAATGAAGAGGCAG
++
+IIIIIII""IIIIIIIIIIIIIIIIII8II;IIIGI
+@HWI-EAS91_1_30788AAXX:1:1:1729:856/1
+TCCTATTGGTTCAATACTGAAACCAAGCACTACCCG
++
+IIIIIII""IIIIIIIIIIIIIIIIFIIIII@IIIH
+@HWI-EAS91_1_30788AAXX:1:1:1748:933/1
+TGAGCTCGGGGCTTCATCTTCTTATTCACAGTAGGA
++
+IIIIIII""IIIIIICIIIIIIIIIIIIII@II5@F
+@HWI-EAS91_1_30788AAXX:1:1:1662:1296/1
+TTAGTTAGGAATAGAATTACACATGCAAGTATCCGC
++
+IIIIIII""IIIIIIIIIIIIIHIIIEI5IIIII4I
+@HWI-EAS91_1_30788AAXX:1:1:1393:345/1
+ATTTACAGGAGAATTGAGTAGTTTTTAGGTAAATTT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIE+IIEIIII
+@HWI-EAS91_1_30788AAXX:1:1:943:780/1
+AGGCGTTGGGTTTGGTTGCCTCAGCGGGTGATGATA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIII;II<IH
+@HWI-EAS91_1_30788AAXX:1:1:1639:968/1
+AGCTCACGGAAAATAGCAGCATCATCCTCCCCACAC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIII8I:I
+@HWI-EAS91_1_30788AAXX:1:1:589:1114/1
+GTCATTCGGGATTAGTTGAGGTTAATTCTACTGTAG
++
+IIIIIII""IIIIIIIIIII1IIIIIIIIIII&II)
+@HWI-EAS91_1_30788AAXX:1:1:763:408/1
+GCCCCACGGCTGGTGTTGACAACATGACTACTGCCA
++
+IIIIIII""IIIIIIIIIIIIII=I*5II<II'II(
+@HWI-EAS91_1_30788AAXX:1:1:950:352/1
+ACGCATAGGCAACATGAAATACCATCTCATCCATAG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIFIIIIIGI
+@HWI-EAS91_1_30788AAXX:1:1:1164:103/1
+TTAACTAGGACATTCACCAAACCATTAAAGTATAGG
++
+IIIIIII""IIIIIIIIIIIAII=IIB58I=<I;II
+@HWI-EAS91_1_30788AAXX:1:1:1078:1202/1
+TAGGGCTGGGCATAGTGGGGTATCTAATCCCAGTTT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIEIII
+@HWI-EAS91_1_30788AAXX:1:1:1617:490/1
+AATCCTTGGTAACCGCATCGGGGATATCGGCTTCAT
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIII:(D
+@HWI-EAS91_1_30788AAXX:1:1:843:504/1
+ACAACATGGAATACCATCTCATCCATAGGATCTTTT
++
+IIIIIII""IIIIIIIIAIIIIII>IIHI=IIIIII
+@HWI-EAS91_1_30788AAXX:1:1:942:318/1
+TTCATACGGGCCATGTCCAGCCTAGCTGTCTACTCA
++
+IIIIIII""IIIIIIIIIIHIIIIIIIIIII<IIIF
+@HWI-EAS91_1_30788AAXX:1:1:1719:283/1
+TTTTGTTGGCCGAGGTCACCCCAACCGAAATTGCTG
++
+IIIIIII""IIIIIIIIIIIIIIIIII3=2IGIIII
+@HWI-EAS91_1_30788AAXX:1:1:1517:961/1
+TGTCACTGGTCCATATTAATATCTTCCTAGCATTCA
++
+IIIIIII""IIIII=III9I@IIIIIIIBIIEIII>
+@HWI-EAS91_1_30788AAXX:1:1:1482:345/1
+AGGATGTGGGTTAATAGCCCTATAGCTAGAAGTAAG
++
+IIIIIII""IIIIIIIIIIIIIIIIII?IAHIIAAI
+@HWI-EAS91_1_30788AAXX:1:1:1697:533/1
+ATGAGGTGGATTAGGAGGTGTCCGGCGGTAATGTTA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIII1>IIIII
+@HWI-EAS91_1_30788AAXX:1:1:1159:1225/1
+TTTCTACGGCAAGGGACGCCCATTTTCCTCATCCCC
++
+IIIIIII""IIIII=I7IIII3IIIIIIII/ID@II
+@HWI-EAS91_1_30788AAXX:1:1:982:332/1
+AAGGATTGGATCCCCTCCTCCTGCGGGGTCGAAGAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIII?<I7@
+@HWI-EAS91_1_30788AAXX:1:1:1073:668/1
+AGCATTTGGCAACCCCTACCTGCCAGAACTCTACTC
++
+IIIIIII""IIIIIIIIIIIIIII>I4@IIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1386:1163/1
+AGTTGGCGGAAAAGCAGCCATCAATTAAGAAAGCGT
++
+IIIIIII""IIIIIIIIIICII=GIIIII@IGIIII
+@HWI-EAS91_1_30788AAXX:1:1:1196:344/1
+ATTGAAGGGAGTTGATTAGGGTATTTAGCTGTTAAC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII7
+@HWI-EAS91_1_30788AAXX:1:1:1551:1269/1
+ATTACCAGGATCCTAATAGGAGCCAATATCACCATC
++
+IIIIIII""IIIIIIIIGIIIIIIIIIIII@II4II
+@HWI-EAS91_1_30788AAXX:1:1:928:468/1
+AGGAGATGGAAATTTTAACTTGGCGCTATAGAGAAA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIC<IHIII
+@HWI-EAS91_1_30788AAXX:1:1:763:835/1
+GCTCAGAGGAAGCCAGAGAAGAAGAAGACTTCTGAG
++
+IIIIIII""IIIIIIIHIEFIIFI<IIIIIIDII:I
+@HWI-EAS91_1_30788AAXX:1:1:1363:330/1
+TAGCCTCGGAGTTTTAGTAGAATGGCTGCTAGCACT
++
+IIIIIII""IIIIIIII@IIIIIIIIII5I,5C-75
+@HWI-EAS91_1_30788AAXX:1:1:1001:837/1
+ATACTATGGCTGTGAGGAATAATCATAACTAGTTCC
++
+IIIIIII""IIIII2IIIIIIIIIIIFIII:IIIII
+@HWI-EAS91_1_30788AAXX:1:1:1189:616/1
+TTTGATAGGGTAAAACATAGAGGCTCAAACCCTCTT
++
+IIIIIII""IIIIIIIIIIIIIIIIICIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1212:634/1
+ATCAACAGGTATTCTGATTCTTCGGACACCCCGAAG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIAIIIIF(.I
+@HWI-EAS91_1_30788AAXX:1:1:1271:421/1
+ACACGACGGCACCTAATGACCCACCAAACCCACGCT
++
+IIIIIII""IIIIIIIIIIIIIIII>C:IIIDI<II
+@HWI-EAS91_1_30788AAXX:1:1:1582:328/1
+AGCATTAGGCTTTTAAGTTAAAGATTGAGGGTTCAA
++
+IIIIIII""IIIIII,IIIB;BI<IIIIII+IIIBI
+@HWI-EAS91_1_30788AAXX:1:1:1133:687/1
+AGAGAGCGGATTAGGAATACGATTATTAGTGTGTGG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIII4III
+@HWI-EAS91_1_30788AAXX:1:1:1231:662/1
+TCACTCTGGAGAACATATAAAACCAACATAACCTCC
++
+IIIIIII""IIIIIIIIIIIIIIIIII?ICCIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1693:1140/1
+ATTGATAGGATGGGGGTTAGGGGGAGGAGTAGGGAG
++
+IIIIIII""IIIIIIIIIIIIIII:II5II7IIA-I
+@HWI-EAS91_1_30788AAXX:1:1:867:279/1
+AAGCATTGGACTGTAAATCTAAAGACAGGGGTTGGA
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1095:605/1
+AAGCAAGGGACTGAAAATGCCTAGATGAGTATTCTT
++
+IIIIIII""IIIIIIIIIIIIIIIEIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1650:1185/1
+ACCCCAGGGAACCCTCTCAGCACTCCCCCTCATATT
++
+IIIIIII""IIIIIIIIIIII6IIIIIIIII5I-II
+@HWI-EAS91_1_30788AAXX:1:1:799:192/1
+AATGTTAGGGGTTAGCCGCACGGCTAGGGCTACAGG
++
+IIIIIII""IIIIIIIIII8IIIEIIIII<I::%II
+@HWI-EAS91_1_30788AAXX:1:1:1082:719/1
+TCTTGAGGGTCTATGGTGCTGGTATGGGTTAATTTA
++
+IIIIIII""IIIIIIA8III>I92I3+3IIE0III<
+@HWI-EAS91_1_30788AAXX:1:1:1746:1180/1
+AAAATTAGGGAGAAGTAATCTAGTTTGAAGCTTAGG
++
+IIIIIII""IIIIIIIIIIIIIIIIIIFIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:606:460/1
+TTAATTTGGATTATAATAACACTCACAATATTCATA
++
+IIIIIII""IIIIIIIIIIIIIIIIII?I6IIIII6
+@HWI-EAS91_1_30788AAXX:1:1:1059:362/1
+ATCGGTAGGCTCGTAGCTTCAGTATCATTGGTGGCC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIII2)</II
+@HWI-EAS91_1_30788AAXX:1:1:1483:1161/1
+ATATGTGGGGGGTGGGGATGAGTGCTAGGATCAGGA
++
+IIIIIII""IIIIIIIIIIIIIIIHIAIIFIIIIIH
+@HWI-EAS91_1_30788AAXX:1:1:1273:600/1
+TACTGAGGGGTATCCTGAGGTATGGGTGTCTAATAC
++
+IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
+@HWI-EAS91_1_30788AAXX:1:1:1190:1283/1
+TTTCTGGGGTACAAGACCAGGGTAATGTGCGATATA
++
+IIIIIII""IIIIIIIIIIIIIIIAIIIII-?IIIE