diff rnaseq/cutadapt/test-data/pgSnp2snp_output.txt @ 11:a712b378e090

cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/pgSnp2snp_output.txt	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,10002 @@
+#{"column_names":["chr","pos","A","B","Q","1A","1B","1G","1Q"],
+#"individuals":[["na",6]],
+#"dbkey":"hg19","pos":2,"rPos":2,"ref":1,"scaffold":1,"species":"hg19"}
+chr1	1888681	T	C	-1	3	4	1	0.8893
+chr1	3118325	C	T	-1	0	8	0	0.8796
+chr1	3211457	A	C	-1	17	10	1	0.8576
+chr1	3222692	G	A	-1	10	14	1	0.8694
+chr1	3281273	G	A	-1	5	4	1	0.8210
+chr1	3630475	C	T	-1	12	12	1	0.8430
+chr1	4599834	C	T	-1	0	18	0	0.8797
+chr1	5287107	T	G	-1	0	6	0	0.8443
+chr1	5307765	C	T	-1	22	12	1	0.8505
+chr1	5341621	A	C	-1	5	3	1	0.9001
+chr1	5478586	A	G	-1	0	11	0	0.8997
+chr1	5680961	A	C	-1	16	10	1	0.8135
+chr1	5736051	G	A	-1	34	57	1	0.8655
+chr1	5831207	C	T	-1	5	10	1	0.8575
+chr1	6200884	A	C	-1	0	13	0	0.8346
+chr1	6307254	T	C	-1	0	11	0	0.8723
+chr1	6621228	G	T	-1	10	11	1	0.8336
+chr1	7094424	G	A	-1	0	4	0	0.8578
+chr1	7392593	C	T	-1	15	25	1	0.8644
+chr1	7500089	C	G	-1	0	13	0	0.8508
+chr1	7911301	C	T	-1	8	9	1	0.8736
+chr1	7954646	C	T	-1	12	8	1	0.8490
+chr1	8027386	C	T	-1	15	21	1	0.8528
+chr1	8549302	C	T	-1	8	7	1	0.8633
+chr1	8932179	G	T	-1	13	12	1	0.8594
+chr1	9016389	C	T	-1	0	14	0	0.8590
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+chr1	10615774	T	C	-1	0	15	0	0.8684
+chr1	10622975	C	T	-1	0	4	0	0.8001
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+chr1	12238146	G	A	-1	9	4	1	0.8560
+chr1	12429037	A	G	-1	8	6	1	0.8863
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+chr1	13189040	A	T	-1	8	4	1	0.8868
+chr1	14208570	G	A	-1	8	10	1	0.8646
+chr1	14501554	G	A	-1	26	17	1	0.8646
+chr1	15063865	G	A	-1	18	9	1	0.8571
+chr1	15286095	A	G	-1	0	21	0	0.8600
+chr1	15441925	C	T	-1	0	17	0	0.8402
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+chr1	17053721	G	T	-1	0	66	0	0.8916
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+chr1	17408311	G	C	-1	0	22	0	0.8786
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+chr1	66946305	G	C	-1	0	37	0	0.8304
+chr1	67002116	T	C	-1	0	15	0	0.8375
+chr1	67094335	G	A	-1	0	30	0	0.8477
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+chr1	69748509	A	G	-1	21	12	1	0.8674
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+chr1	71084849	A	G	-1	10	6	1	0.8905
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+chr1	72402879	G	A	-1	12	13	1	0.8149
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+chr1	73025215	G	A	-1	0	19	0	0.8334
+chr1	73742617	T	G	-1	5	11	1	0.8673
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