Mercurial > repos > jjkoehorst > sapp
diff ipath.xml @ 35:fa736576c7ed draft
planemo upload commit 16d0bc526ad02361a7c13231d4c50479c42d8d0f-dirty
| author | jjkoehorst |
|---|---|
| date | Mon, 04 Jul 2016 10:37:59 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ipath.xml Mon Jul 04 10:37:59 2016 -0400 @@ -0,0 +1,39 @@ +<tool id="DIPath" name="iPath" version="2.01"> + <description>iPath Generator</description> + <requirements> + <container type="docker">jjkoehorst/sappdocker:IPATH</container> + </requirements> + <command interpreter="docker">java -jar /ipath/iPath-0.0.1-SNAPSHOT-jar-with-dependencies.jar + #if $conditional.source_select=="single" + -group1 '$conditional.input' + #else + -group1 $conditional.input1 + -group2 $conditional.input2 + #end if + -o "$outfile" -format TURTLE + </command> + <inputs> + <param label="Priam E-Value cutoff" name="Evalue" optional="False" size="60" type="float" value="1E-1"/> + <conditional name="conditional"> + <param label="Analysis method" name="source_select" type="select"> + <option value="single">Single genome</option> + <option value="group">Group comparison</option> + </param> + <when value="single"> + <param format="ttl" label="RDF Genome file" name="input" type="data"/> + </when> + <when value="group"> + <param format="rdf" label="RDF Genome file for group 1" multiple="True" name="input1" type="data"/> + <param format="rdf" label="RDF Genome file for group 2" multiple="True" name="input2" type="data"/> + </when> + </conditional> + </inputs> + <outputs> + <data format="tsv" label="iPath comparison" name="outfile"/> + </outputs> + <help>GROUP 1: #FF0000 +GROUP 2: #0000FF +BOTH: #00FF00 + +</help> +</tool> \ No newline at end of file