Mercurial > repos > jjkoehorst > sapp

diff pathwayAnalysis.xml @ 35:fa736576c7ed draft

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planemo upload commit 16d0bc526ad02361a7c13231d4c50479c42d8d0f-dirty
author jjkoehorst
date Mon, 04 Jul 2016 10:37:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pathwayAnalysis.xml	Mon Jul 04 10:37:59 2016 -0400
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+<tool id="DPathway" name="Pathway analysis" version="0.1">
+	<description/>
+	<command interpreter="docker">java -jar /pathwayanalysis/pathwayAnalysis-0.0.1-SNAPSHOT-jar-with-dependencies.jar -input $input -output $output -format TURTLE</command>
+	<inputs>
+		<param format="ttl" label="Annotated RDF file" name="input" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="tsv" label="PathwayAnalysis: ${input.name}" name="output"/>
+	</outputs>
+	<help>Pathway overview information for MetaCyc and KEGG
+	</help>
+</tool>
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