Mercurial > repos > jjkoehorst > sapp

view rnaseq/cutadapt/test-data/maf_reverse_complement_out.dat @ 12:0773b11fb822

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
cutadapters added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:56:49 +0100
parents a712b378e090
children
line wrap: on
line source

##maf version=1
a score=60426.0
s hg17.chr7     31156613 331 - 158628139 TTAGTGGATGTT-------------------TTCA-------TACCTCCAT-----CAGGACATCAGTGGC-AGTATTT-------------------------------GGGAAGTTTTAAAAGGTGGTCTTTATAGCATCTCTTCCTCCAGTCAACAAACACACAGTCTTATATGTTTGTGAGAtacataacacactatgcctaaaacttagtggcttaacccaagactatttatttagctcataattctgtgggtccagcaatatggcctgactcaTGCCTGTGGTGGCTGGCTGGCTATCAGCTAAGATGATGAGGGTAACtggtctagcctgggcttgtttacatggtgacagctgctggattccctagagcagcaaaagatggcaaac 
s panTro1.chr6  31691568 331 - 161576975 TTAGTGGATGTT-------------------TTCA-------TACCTCCAT-----CAGGACATCAGTGGC-AGTATTT-------------------------------GGGAAGTTTCAAAAGGTGGTCTTTATAGCATCTCTTCCTCCAGTCAACAAACACACAGTCTTATATGTTTGTGAGAtacataacacactatgcctaaaacttagtggcttaacccaagactatttatttagctcataattctgtgggtccagcaatatggcctgactcaTGCCTGTGGTGGCTGGCTGGCTATCAGCTAAGATGATGAGGGTAACtggtctagcctgggcttgtttacatggtgacagctgctggattcccaagagcagcaaaagatggcaaac 
s mm5.chr6     120816603 357 - 149721531 TTAGTGATTTTTAAAAAAACAGTTACAGTGTCTCACTAATGCTACCTCCATGAGTTCAGCCCATTACTAGTGAGTATTTTTACACCTGTTGGCCTGCCTATAGCTAAACTGGGGGCTTTTTAAATGTAACCCCCTTGCTGTCTCTTCCTGCAG----CAAGCACACGATCTTAGAG--TCATGAGTAACACCGCAAACTGGCCCCAAGGCTTG-------AAACAACAGCCAGGTTTCCAGATCACGGTTCAGTGGATC-AATGGCATAGCCTTATTCCTG-----AGTGGC-AACTGACTGCCAGCTGCAGTCAAGATAGTAACTGGACCACCCTCG-TTTGTTTCCATGGTGACAG----------------AACAGCAAACGAGAGTGGAG 
s rn3.chr4     131192656 282 - 187371129 TTAGTGAGTATT-------------------GTTA-------TACC--CAT-----TGGGCTGTCTACAGCTAGACTCC---------------------------------GAACCTTTTAAAGGTAATCCTCTTGCCGTCTCTTCCTGGAG----CAAACACACAATCTTAGAG--TCATGAGTGACACCGCAAACTGGCCCCA----------------------GCCAAATTCCTAGATCAAGGTTCAGTGGATC-AATGGTATGGCCTTATTCCTGTGAGTGGCAGCTAGCTGAC-AGCTGCTGTGATCAAGATAGTAACTGGGCTAGCCTGTGTTTGTCTCCATAGTGACAG----------------AACAGCAAATGAGAGTGAAG 

a score=8157.0
s hg17.chr7     31156555 58 - 158628139 CCTCTTCCACTATAGACCTCCTTAAACAAAATAATGAAAAATGAATAAACCACAAATT 
s panTro1.chr6  31691510 58 - 161576975 CCTCTTCCACTATAGACCTCCTTAAACAAAATAATGAAAAACGAATAAACCACAAATT 
s mm5.chr6     120816549 54 - 149721531 CCTCTTCCACTGAGGAATTTCTTTTTTTAAATGATGAGCAATCAATGAAACG----TT 

a score=43613.0
s hg17.chr7      31156451 104 - 158628139 aaaaataaggaagaatttctg-tgtaactgcaagaccattatcacacaataataattccctaacatcgtgaaagctagtctatacaa---aatttccCCAAATATCTC 
s panTro1.chr6   31691406 104 - 161576975 aaaaataaggaagaatttctg-tgtaactgcaagaccattatcacacaataataactccctaacatcgtgaaagctagtctatacaa---aatttccCCAAATGTCTC 
s mm5.chr6      120812304 102 - 149721531 AAAAGTAAGGGTTTTTTTTTAATTTAACCATAATATCACTATCAAACAATAGCAATTCTTTAAGATCATGAAAG------TATACATCGTATTTCCCCCAAATGTCTC 
s rn3.chr4      131188834  99 - 187371129 ACAACTAAG--ATTTTTTTTA-TTTAACCATAAGATCACTATCAAACAGTAGCAATTCTTTAAGATCATGGAAG------TGCACATCATATTTCCCCCAAATATCTC 
s canFam1.chr14  10685009 108 +  63549963 AAAAATAAGGAAGCATTTCCCCCATAACCACGAGACTATCATCAGACAATTATAATTTCTTAGCATCACAAAAGAGCAACACTACATTCAAATTCCCCCAAATATCTC 

a score=63217.0
s hg17.chr7      31156268 183 - 158628139 tttttaaatgaaaaatttaaacatacagaaaagtgtgcaatactatagtgaactacaatatacccatcacctagatttaataattattat-tttccatattt--gcttcatt----------------aattattttgg-----caaaaacattttaaagtgtattgcacacatcatgacatttt---atcccta----ctttggtgc---ttccca 
s panTro1.chr6   31691223 183 - 161576975 tttttaaatgaaaattttaaacatacagaaaagtgtgcaatactatagtgaactacaatatacccatcacctagatttaataattattat-tttccatattt--gcttcatt----------------aattattttgg-----caaaaatattttaaagcgtattgcacacatcatgacatttt---atcccta----ctttggtgt---ttccca 
s mm5.chr6      120812128 176 - 149721531 TTTTAAAATGAAAATTTCAAACACA----ATAGTGAAAAATAATATAGTGAGTTA-----TACTTATTACCCATATGTAATAATTGCTAT-TTCCCATAGTTTAGCCTCAG---------------------GTTTT-------CAAAATTATTTTAAAGCAAATTGCAGACACTATGACATTGTCATACCCCTAAATATTTGAGTAT---TTTATG 
s rn3.chr4      131188640 194 - 187371129 TTTTCAAATGAAAAATTCTAAGAAA-------------AATAATATAACGAATTA-----TACTTATTACCCATATGTAACAATTACCAC-TTCCCATAGTGTAGCTTCAGTTTTTCAAAATTATTAAAACTTTTTTAAATATTTAAAAAT-CTTTAAAGCAAATTGCAGACACTGTGACATTGTCACGCCCCTAAATATTTGAGTAT---TTTCTA 
s canFam1.chr14  10684651 163 +  63549963 TTTTTAAATGAAAATTTCAAACATATGGAAAAG---------------------------TATGCAtcacctagatttaatgattattgtcttcccatattt--gcttcatt----------------tact-ttttgg-----ctaaaatattttaaagccaattgcaaacatcatgacatttc---atccttaaatacttcagtttgtgtctcta 

a score=8913.0
s hg17.chr7      31156227 40 - 158628139 tgctatgctcctagctcatagcctggtgtcta-----gctcaaag 
s panTro1.chr6   31691182 40 - 161576975 tgctatgctcctagctcatagcctggtgtcta-----gctcaaag 
s mm5.chr6      120810825 44 - 149721531 CGCTGTA-TCCAATTTAAGAGCTCAGTGCCTACCTAAGCACAAAG 
s canFam1.chr14  10684385 40 +  63549963 tgctatatacccagctcatagtccaggatcta-----gcaTGATG 

a score=91878.0
s hg17.chr7      31155892 335 - 158628139 tcccggtacttttccagtgccaagaacacatgggtgcc-cagggaaaatttgctgaatTGAACCCCAGGAACAACACACACCATAGAGATGATT-TTTGTTATGTGTTATATTCATGT-ACCACTATACAGGGATTCCTCTAGACGCAAGGCCACTGGGAAGG------TAAATGTTTAAAACTTGGGAAAACACACCTGCAGTGATGATG---CGGAGGGAACAGGAAAAGCCAGGATCACA-CAGGTCCTGGAGACCACAGTCACATTGCATTCGAGGCTTCCTAATGGAAACATGTTTCCCAGagaatgtgcattcttt-gag--------------------------------------------------ttggtaggagtctat----------------------------------------------------------------------------------------------ttggtcat 
s panTro1.chr6   31690847 335 - 161576975 tcccggtacttttccagtgccaagaacacatgggtgcc-caggaaaaatttgctgaatTGAACCCCAGGAACAACACACACCATAGAGATGATT-TTTGTTATGTGTTATATTCATGT-ACCACTATACAGGGATTCCTCTAGACGCAAGGCCACTGGGAAGG------TAAATGTTTAAAACTTGGGAAAATACACCTGCAGTGATGATG---CAGAGGGAACAGGAAAAGCCAGGATCACA-CATGTCCTGGAGACCACAGTCACATTGCATTCGAGGCTTCCTAATGGAAACATGTTTCCCAGagaatgtgcattcttt-gag--------------------------------------------------ttggtaggagtctat----------------------------------------------------------------------------------------------ttggtcat 
s mm5.chr6      120810475 350 - 149721531 TCCTGGTGCCTTCACAGCACCAA----------------CAGGAAAGATTTGCAGAGGTGACTTCCAG-ATTACCATGCACCACCCGGCTG------------------------TGC-ACTTCACTATGAATATTCTTCTAGATTTGAGGC-ACTGGAAAGGAGGGGGTACTTTCTTTAAACTTGAGGAAATATATTCGTGGTAATGATG---TGAAAGAAACCAGGAAAACCAGGTTTAAGGCGGGGCCTGGG--CAACTGTCATAGTGTACTTGGGACTTTCTAGCGGATGCATGTTCCTCAAAGACAACCCACCCTGT-GAGGCTATAGGTTTTTTTGGTTTTTGGTTTTTGGTTTTTTTGTTTGTTTGTTTTTTGTTGTTGTTTTT----------------------------------------------------------------------------------------------TTGCTCAT 
s rn3.chr4      131187261 420 - 187371129 ACCTGGTACCTTCACAGCACCAACACCATGTAGGTTCCCCGGGAAAGGTTTGCTGAGGTGACTTCCGG-GATACCATATACCACACAGCTG---------------TCGGGTTAGTGT-ACATCATTATGAATGTGCTTCTAGATCTAGGGC-ACTGGAAAGGAGTGG-GACTTCTTTTAAACCTGAGAAAATGTATTTGTGGTAATGGTG---TGAAAGAAACCAGGAAGACCAGGTTCAAGGTGGTGCCTGGGGGCAACCATCACATTGTATTTGAGACTTCCTAGGGTTAGCACGCTCCTCAAAGACAACCCACCCTGT-GAG--------------------------------------------------GTTATAGGTTTCTGCCCAGCACTGTTAAGAGCTCAGCACCTACCTAGCACAAAGCTAGATTATCTTTTTATGTCTCCATTCACAATGCTATACATGTAAACAGTGTATATTGGTCAT 
s canFam1.chr14  10684049 336 +  63549963 TCCTGGTACGTTTGCAGTGCCAGGTGCAT----GTGCT-CAGAAGAAGTTTCCCGAACAGAACCTCAGGGGCAACATGCACCACAGAACTGATTATTTCTGACCTTCAGTATTAGTGCCACCATAGTGGGGGGACTCCTCTAGACTCAAGGCCACCGGGAAG-------CAGATATTTAAAATGTGGGAAAACACACCTGCAGTGATGATGGTGTGGAGGGGACATGGAACGGTAGGCTGACA-TAGGTCCTGGCGGC-ACCATCAGATCACATTGGAGACTTTCTTATGGAAACATGTTCCCCAAAGGTtgtgtgctccatcaag--------------------------------------------------actgcagggctctgtt---------------------------------------------------------------------------------------------ttgttcac 

a score=82819.0
s hg17.chr7      31155458 423 - 158628139 acaggaaatttgcatttctgtgtct----ataaagttttgaattctgtcaacaaaaaattgtgta---aattgtttattcttgttgtataagtacccatgtaatatcctca-attttgc--cttggcttagaaagcctaaaatgttttctacctggccctt-tagagaaagttc-ccagcccttgAACCAGGGAACACACATACATTG-------CACATTGATTCCTCCAGGCCTTTTTTCTTTCCAGTCCGTCTGTGGGGATGCCCAACTGTGCATCCATCGCTTCTCCCGGAAGAATCTCCCC-ATTCCACTAGGGCCTCTCCATCCT---TAAAGAAGCTTTTCCTAGTTCCCCTTGCAGCTAATTCCTGTCTCTCAGTCTGGGTTGGGTG-CCCCTTTCCAtctcctcccttaggtttta---agaggacagggat-tgggccatc 
s panTro1.chr6   31690413 423 - 161576975 acaggaaatttacatttctgtgtct----ataaagttttgaattctgtcaacaaaaaattgtgta---aattgtttattcttgttgtataagtacccatgtaatatcctca-attttgc--cttggcttagaaagcctaaaatgttttctacctggccctt-tagagaaagttc-ccagcccttgAACCAGGGAACACACATACATTG-------CACATTGATTCCTCCAGGCCTTTTTTCTTTCCAGTCCGTCTGTGGGGATGCCCAACTGCGCATCCATCGCTTCTCCCGGAAGAATCTCCCC-ATTCCACTAGGGTCTCTCCATCCT---TAAAGAAGCTTTTCCTAGTTCCCCTTGCAGCTAATTCCTGTCTCTCAGTCTGGGTTGGGTG-CCCCTTTCCAtctcctcccttaggtttta---agaggacagggat-tgggccatc 
s mm5.chr6      120810130 334 - 149721531 TTAAGAAATTAAAACTTTAGCATCCTCAAATAAAGTTCTGAATTTGGTCAACCAAAAATTGT-------CTTGTTTTCTCTTGT---ATAAGTACCCACGGGGTAACCTTT-ATTTCCC-TCTTGGCCTGCCAAGCGAGAATTGTTTGCTAACCTGC---------------------------AAACTATGAAACCTACACACACC--------TGCGCTGGCTGCTCCTGGCTCCCAGTCCTGCCCGTCTCT-TATGGGCGTTCCTGGAGTCAGGTCCATCCCTTCTGCCCACAGAACCCCCCCTGTTTTGCATAGGCCCTGCTCTCCA-----------------------CCACTGGCAG---------GCTTCCTTGTCTA---TGGAC----------------------------------AGAGAACAGAGCCCTCTGCCATT 
s rn3.chr4      131186910 340 - 187371129 AAAAGAAATTTAAACTTTAGCATCCTCAAATAAAGTTCTGAATTTGGTCAACCAAAAATTGT-------CTTGTTTTCTCTTGT---GTAAGCACTCACGGGGTCACCTTC-AGTTTCC-TCTTGGCCTGCAAAGCAGGAATTGTTTGCCAACCTGC---------------------------AAACTATGAAATATACACACGCCCGCACACCTGCGCTGGCTTCTCCTGGGTCTCAGTCCTGCCAGCCTCTCTATGGCTATGTCCGGAGGCTAGTCCATCCCTTCTGCCTACAGAAGCCCCCT-CTTTTGCATAGGCCCTGCTCTCCA---T----------------------CTGAGAG---------GCTTCTTTGACTA---TGGAC----------------------------------AGAGAACAGGGGCCTCTGCCATT 
s canFam1.chr14  10683450 405 +  63549963 atatgaagtttacattttggcatccctaagtaaagttttgaattttatc--caaaaaattccgggggcaacttttccctcttgt---------acctac---ataccctctgatgtcgcctcttggtctgaaaagcctaaaatgtttatcatcccacccttagagagaaagtttgccaacccTGGAACTAGAAAA------TACATTG-------CACGTTAGCTCTTCTGGGTCTTTATTCCTGCCAGTC-GTGGGCGGGCATGCAGGACTGCTCAATCAGGCCTTCTCCAAGCA--------CC---------GGGGTCTCTTCTTCCTGGTTGAAGTAGCTTGTCCTGGTCACCTTTCCAGCCAACTCCCCTCATTCCAACTGGCTTGCGTGACCTCTTCCCACCTCTGCCCACAGGCTGTAAGTGGAAGGCAGGCAT-CAAGTCTCC 

a score=15522.0
s hg17.chr7     31154233 97 - 158628139 gcaaatgacgttggtgaaccgagcctg-ccactgccgggtttggtaatgcccaaaagctaagaatggtttctacatttgtaaaagtttgaaaaaaaaa 
s panTro1.chr6  31689192 97 - 161576975 GCAAATGATGTTGGTGAACCGAGCCTT-ccactgccgggtttggtaatgcccaaaagctaagaatggtttctacatttgtaaaagtttgaaaaaaaaa 
s canFam1.chr14 10683318 97 +  63549963 gcaagttatgtgggtgagccaaatccgaccaccaccaggaccaccatggccccga-gctaggaatggtttttgcatttttaaagagttgaaaaatata 

a score=28088.0
s hg17.chr7    31153902 331 - 158628139 agccaggcgtggtagctcaagcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggatttcgagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaattagccaggtgtggtggtgagtgtctgtaatcccagctacttgagaggctgaggcaggagaatggcttgaacctgggaagtggaggttgcagtgagccaagatcagaccattgcactacagcctgggcaacaagagtgaaactctgtctcaat-aaaaaaaacaaaacaaaacaaaacCCATAACATAAAGcggggaact 
s panTro1.chr6 31688874 318 - 161576975 agccaggcgtggtagctcaagcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggatttcgagaccagcctggccaacatgatgaaacctcatctctactaaaaatacaaaattagccaggtgtggtggtgagtgtctgtaatcccagctacttgagaggctgaggcaggagaatggcttgaacctgggaagtggaggttgcagtgagcca--------------cactacagcctgggcaacaagagtgaaactctgtctcaataaaaaaaaaaaaaaaaaaaaaaaaCCCATAATATAAAGCGGGGAACT