<tool id="DPathway" name="Pathway analysis" version="0.1">
	<description/>
	<command interpreter="docker">java -jar /pathwayanalysis/target/pathwayAnalysis-0.0.1-SNAPSHOT-jar-with-dependencies.jar -input $input -output $output -format TURTLE</command>
	<inputs>
		<param format="ttl" label="Annotated RDF file" name="input" type="data"/>
	</inputs>
	<outputs>
		<data format="tsv" label="PathwayAnalysis: ${input.name}" name="output"/>
	</outputs>
	<help>Pathway overview information for MetaCyc and KEGG
	</help>
</tool>