<tool id="DPhylogeny" name="Phylogeny analysis" version="0.1">
	<description/>
	<requirements>
		<container type="docker">jjkoehorst/sappdocker:PHYLOGENY</container>
	</requirements>
	<command interpreter="java -jar">/phylogeny/phylogeny-0.0.1-SNAPSHOT-jar-with-dependencies.jar
		-input $input -output $output -format TURTLE</command>
	<inputs>
		<param format="ttl" label="Annotated RDF file" multiple="true" name="input" type="data"/>
	</inputs>
	<outputs>
		<data format="newick" label="Phylogeny" name="output"/>
	</outputs>
	<help>Phylogeny analysis based on protein signatures
	</help>
</tool>