Mercurial > repos > jjohnson > arriba
diff arriba_get_filters.xml @ 5:005b200c8841 draft
"planemo upload for repository https://github.com/jj-umn/tools-iuc/tree/arriba/tools/arriba commit bdefea23247f7d999b96e232ce810e2887338680"
| author | jjohnson |
|---|---|
| date | Sun, 10 Oct 2021 13:00:45 +0000 |
| parents | 77021ad5037d |
| children |
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--- a/arriba_get_filters.xml Sat Oct 09 15:41:49 2021 +0000 +++ b/arriba_get_filters.xml Sun Oct 10 13:00:45 2021 +0000 @@ -34,8 +34,8 @@ </param> </inputs> <outputs> - <data name="blacklist" format="tabular" label="${tool.name} ${arriba_reference_name} blacklist.tsv"/> - <data name="known_fusions" format="tabular" label="${tool.name} ${arriba_reference_name} known_fusions.tsv"/> + <data name="blacklist" format="tabular.gz" label="${tool.name} ${arriba_reference_name} blacklist.tsv.gz"/> + <data name="known_fusions" format="tabular.gz" label="${tool.name} ${arriba_reference_name} known_fusions.tsv.gz"/> <data name="protein_domains" format="gff3" label="${tool.name} ${arriba_reference_name} protein_domains.gff3"/> <data name="cytobands" format="tabular" label="${tool.name} ${arriba_reference_name} cytobands.tsv"/> </outputs> @@ -50,12 +50,21 @@ </test> </tests> <help><![CDATA[ -** Arriba ** +**Arriba Get Filters** Arriba_ is a fast tool to search for aberrant transcripts such as gene fusions. It is based on chimeric alignments found by the STAR RNA-Seq aligner. +The **Arriba Get Filters** tool adds the following Arriba distribution input_files_ to your galaxy history: + + - blacklist + - known_fusions + - protein_domains + - cytobands + + .. _Arriba: https://arriba.readthedocs.io/en/latest/ +.. _input_files: https://arriba.readthedocs.io/en/latest/input-files/ ]]></help> <expand macro="citations" />