Mercurial > repos > jjohnson > arriba

diff arriba_get_filters.xml @ 4:77021ad5037d draft

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"planemo upload for repository https://github.com/jj-umn/tools-iuc/tree/arriba/tools/arriba commit 5a62e8a2ec56a8ce00f89c8fbe61b3f1dffbbffd"
author jjohnson
date Sat, 09 Oct 2021 15:41:49 +0000
parents 7420753b0671
children 005b200c8841
line wrap: on
line diff
--- a/arriba_get_filters.xml	Fri Oct 08 20:44:25 2021 +0000
+++ b/arriba_get_filters.xml	Sat Oct 09 15:41:49 2021 +0000
@@ -34,11 +34,21 @@
         </param>
     </inputs>
     <outputs>
-        <data name="blacklist" format="tabular" label="${tool.name} ${arriba_reference_name} blacklist"/>
-        <data name="known_fusions" format="tabular" label="${tool.name} ${arriba_reference_name} known_fusions"/>
-        <data name="protein_domains" format="tabular" label="${tool.name} ${arriba_reference_name} protein_domains"/>
-        <data name="cytobands" format="tabular" label="${tool.name} ${arriba_reference_name} cytobands"/>
+        <data name="blacklist" format="tabular" label="${tool.name} ${arriba_reference_name} blacklist.tsv"/>
+        <data name="known_fusions" format="tabular" label="${tool.name} ${arriba_reference_name} known_fusions.tsv"/>
+        <data name="protein_domains" format="gff3" label="${tool.name} ${arriba_reference_name} protein_domains.gff3"/>
+        <data name="cytobands" format="tabular" label="${tool.name} ${arriba_reference_name} cytobands.tsv"/>
     </outputs>
+    <tests>
+        <test>
+            <param name="arriba_reference_name" value="GRCh38"/>
+            <output name="cytobands">
+                <assert_contents>
+                    <has_text_matching expression="1\t1\t\d+\tp36.33\tgneg"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
     <help><![CDATA[
 ** Arriba **