Mercurial > repos > jjohnson > arriba_download_reference
diff tool-data/arriba_indexes.loc.sample @ 0:7345cb1bb772 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit c1d05da7c2c76feae94cbc640be7b010f31397d2-dirty"
| author | jjohnson |
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| date | Fri, 11 Feb 2022 19:09:19 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/arriba_indexes.loc.sample Fri Feb 11 19:09:19 2022 +0000 @@ -0,0 +1,17 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of Ariba data files. +#The Arriba script download_references.sh retrieves a genome assembly fasta +#and a related GTF annotation file, then builds a STAR index. +#You will need to create these data files and then create a +#arriba_indexes.loc similar to this one (store it in this +#directory) that points to the directories in which those files are stored. +#The arriba_indexes.loc file has this format (longer white space +#characters are TAB characters): +# +#<unique_build_id> <display_name> <genome_fasta_path> <genome_gtf_path> <STAR_index_path> +# +#Note that STAR indices can become quite large. +# +#<unique_build_id> <display_name> <genome_fasta_path> <genome_gtf_path> <STAR_index_path> +#GRCh38+ENSEMBL93 GRCh38+ENSEMBL93 /depot/GRCh38+ENSEMBL93/genome.fa /depot/GRCh38+ENSEMBL93/genome.gtf /depot/GRCh38+ENSEMBL93/STAR_index/ +