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comparison tool_dependencies.xml @ 4:88f9e90d9d78

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Fix provided by Bjoern to tool_dependencies.xml to install correctly
author Jim Johnson <jj@umn.edu>
date Fri, 15 Aug 2014 10:11:31 -0500
parents cca0838c1597
children
comparison
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3:43724ea1c85f 4:88f9e90d9d78
3 <package name="cd-hit" version="4.6.1"> 3 <package name="cd-hit" version="4.6.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> 6 <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
7 <action type="shell_command">make openmp=yes</action> 7 <action type="shell_command">make openmp=yes</action>
8 <action type="move_file">
9 <source>cd-hit</source>
10 <destination>$INSTALL_DIR</destination>
11 </action>
12 <action type="move_file">
13 <source>cd-hit-est</source>
14 <destination>$INSTALL_DIR</destination>
15 </action>
8 <action type="set_environment"> 16 <action type="set_environment">
9 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
10 <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable> 18 <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable>
11 </action> 19 </action>
12 </actions> 20 </actions>