Mercurial > repos > jjohnson > cdhit
diff cdhit_macros.xml @ 5:28b7a43907f0 default tip
Fix cheetah tests of whether optional arguments are set
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 29 Oct 2015 09:54:44 -0500 |
| parents | 43724ea1c85f |
| children |
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--- a/cdhit_macros.xml Fri Aug 15 10:11:31 2014 -0500 +++ b/cdhit_macros.xml Thu Oct 29 09:54:44 2015 -0500 @@ -4,36 +4,36 @@ <!-- start adv. settings --> #if $advanced.settings == 'yes': - #if $advanced.band_width: + #if str($advanced.band_width) != 'None': -b $advanced.band_width #end if - #if $advanced.throw_away_len: + #if str($advanced.throw_away_len) != 'None': -l $advanced.throw_away_len #end if - #if $advanced.description_len: + #if str($advanced.description_len) != 'None': -d $advanced.description_len #end if - #if $advanced.cutoff_diff_len: + #if str($advanced.cutoff_diff_len) != 'None': -s $advanced.cutoff_diff_len #end if - #if $advanced.aa_cutoff_diff_len: + #if str($advanced.aa_cutoff_diff_len) != 'None': -S $advanced.aa_cutoff_diff_len #end if #if $advanced.align.style == 'local': -G 0 - #if $advance.align.align_coverage_long: + #if str($advance.align.align_coverage_long) != 'None': -aL $advance.align.align_coverage_long #end if - #if $advance.align.aa_align_coverage_long: + #if str($advance.align.aa_align_coverage_long) != 'None': -AL $advance.align.aa_align_coverage_long #end if - #if $advance.aling.align_coverage_short: + #if str($advance.aling.align_coverage_short) != 'None': -aS $advance.align.align_coverage_short #end if - #if $advance.aling.aa_align_coverage_short: + #if str($advance.aling.aa_align_coverage_short) != 'None': -AS $advance.align.aa_align_coverage_short #end if - #if $advance.align.align_coverage_min: + #if str($advance.align.align_coverage_min) != 'None': -A $advance.align.aling_coverage_min #end if #end if