Mercurial > repos > jjohnson > contig_annotation_tool
comparison cat_bins.xml @ 2:9a01840eac52 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 6b978e61a7f66160f2577d907f52dd641f103986-dirty
| author | jjohnson |
|---|---|
| date | Mon, 25 Nov 2019 15:09:24 -0500 |
| parents | 86cd2e70b0dc |
| children | 18ece3d5bcde |
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| 1:86cd2e70b0dc | 2:9a01840eac52 |
|---|---|
| 22 #end if | 22 #end if |
| 23 @CAT_DB@ | 23 @CAT_DB@ |
| 24 @USE_INTERMEDIATES@ | 24 @USE_INTERMEDIATES@ |
| 25 @CUSTOM_SETTINGS@ | 25 @CUSTOM_SETTINGS@ |
| 26 && @TXT2TSV@ *.ORF2LCA.txt *.bin2classification.txt | 26 && @TXT2TSV@ *.ORF2LCA.txt *.bin2classification.txt |
| 27 #if len($mags) > 1: | |
| 28 #set pat = '$' + '{i/concatenated./}' | |
| 29 && (for i in *.concatenated.*; do ln -s "\$i" "${pat}"; done) | |
| 30 #end if | |
| 27 @ADD_NAMES@ | 31 @ADD_NAMES@ |
| 28 @SUMMARISE@ | 32 @SUMMARISE@ |
| 29 ]]></command> | 33 ]]></command> |
| 30 <inputs> | 34 <inputs> |
| 31 <param name="mags" type="data" format="fasta" multiple="true" label="metagenome assembled genomes (MAGs/bins)"/> | 35 <param name="mags" type="data" format="fasta" multiple="true" label="metagenome assembled genomes (MAGs/bins)"/> |