Mercurial > repos > jjohnson > contig_annotation_tool

view test-data/test_contig.contig2classification.names.txt @ 4:aaeb63501369 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit ec15da3a30507841856303de991cbe80c65128fd-dirty
author jjohnson
date Wed, 27 Nov 2019 10:27:23 -0500
parents ad7507073c3f
children
line wrap: on
line source

# contig	classification	reason	lineage	lineage scores	superkingdom	phylum	class	order	family	genus	species
contig_38063	classified	based on 1/2 ORFs	1;131567;2;1783272;1239;91061;1385;186820;1637;1639	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	Bacteria: 1.00	Firmicutes: 1.00	Bacilli: 1.00	Bacillales: 1.00	Listeriaceae: 1.00	Listeria: 1.00	Listeria monocytogenes: 1.00
contig_44250	classified	based on 1/2 ORFs	1;131567;2;1224;1236;135623;641;662;666	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	Bacteria: 1.00	Proteobacteria: 1.00	Gammaproteobacteria: 1.00	Vibrionales: 1.00	Vibrionaceae: 1.00	Vibrio: 1.00	Vibrio cholerae: 1.00
contig_9952	classified	based on 1/5 ORFs	1;131567;2;1783272;1239;91061*	1.00;1.00;1.00;1.00;1.00;1.00	Bacteria: 1.00	Firmicutes: 1.00	Bacilli*: 1.00	not classified	not classified	not classified	not classified