Mercurial > repos > jjohnson > data_manager_cat
diff data_manager_conf.xml @ 0:f59e7e242bde draft
planemo upload commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
author | jjohnson |
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date | Sun, 24 Nov 2019 21:54:57 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Sun Nov 24 21:54:57 2019 -0500 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/data_manager_cat.xml" id="data_manager_cat" > + <data_table name="cat_database"> <!-- Defines a Data Table to be modified. --> + <output> <!-- Handle the output of the Data Manager Tool --> + <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="database_folder" output_ref="out_file" > + <move type="directory" relativize_symlinks="True"> + <src >${database_folder}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">CAT/${database_folder}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/CAT/${database_folder}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + <column name="taxonomy_folder" output_ref="out_file" > + <move type="directory" relativize_symlinks="True"> + <src >${taxonomy_folder}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">CAT/${taxonomy_folder}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/CAT/${taxonomy_folder}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>