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annotate test-data/mm10_results.filtered.vcf @ 17:c3167ccca38c draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit d2317dff5a89016f18038b97d057f47d949e7808-dirty
author jjohnson
date Sat, 26 Jan 2019 12:53:08 -0500
parents b22f8634ff84
children
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b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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1 ##fileformat=VCFv4.1
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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2 ##source=defuse
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3 ##reference=mm10
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4 ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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5 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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6 ##INFO=<ID=MATEID,Number=1,Type=String,Description="ID of the BND mate">
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7 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Read Depth of segment containing breakend">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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8 ##INFO=<ID=SPLITCNT,Number=1,Type=Integer,Description="number of split reads supporting the prediction">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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9 ##INFO=<ID=SPANCNT,Number=1,Type=Integer,Description="number of spanning reads supporting the fusion">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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10 ##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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11 ##INFO=<ID=SPLICESCORE,Number=1,Type=Integer,Description="number of nucleotides similar to GTAG at fusion splice">
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12 ##INFO=<ID=GENE,Number=2,Type=String,Description="Gene Names at each breakend">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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13 ##INFO=<ID=GENEID,Number=2,Type=String,Description="Gene IDs at each breakend">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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14 ##INFO=<ID=GENELOC,Number=2,Type=String,Description="location of breakpoint releative to genes">
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15 ##INFO=<ID=EXPR,Number=2,Type=Integer,Description="expression of genes as number of concordant pairs aligned to exons">
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16 ##INFO=<ID=ORF,Number=0,Type=Flag,Description="fusion combines genes in a way that preserves a reading frame">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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17 ##INFO=<ID=EXONBND,Number=0,Type=Flag,Description="fusion splice at exon boundaries">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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18 ##INFO=<ID=INTERCHROM,Number=0,Type=Flag,Description="fusion produced by an interchromosomal translocation">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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19 ##INFO=<ID=READTHROUGH,Number=0,Type=Flag,Description="fusion involving adjacent potentially resulting from co-transcription rather than genome rearrangement">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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20 ##INFO=<ID=ADJACENT,Number=0,Type=Flag,Description="fusion between adjacent genes">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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21 ##INFO=<ID=ALTSPLICE,Number=0,Type=Flag,Description="fusion likely the product of alternative splicing between adjacent genes">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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22 ##INFO=<ID=DELETION,Number=0,Type=Flag,Description="fusion produced by a genomic deletion">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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23 ##INFO=<ID=EVERSION,Number=0,Type=Flag,Description="fusion produced by a genomic eversion">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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24 ##INFO=<ID=INVERSION,Number=0,Type=Flag,Description="fusion produced by a genomic inversion">
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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25 #CHROM POS ID REF ALT QUAL FILTER INFO
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26 1 106734547 bnd_4068_1 A A]16:37799068] 233 PASS SVTYPE=BND;MATEID=bnd_4068_2;DP=19;SPLITCNT=8;SPANCNT=11;GENE=Kdsr,Fstl1;GENEID=ENSMUSG00000009905,ENSMUSG00000022816;GENELOC=coding,intron;EXPR=775,35409;HOMLEN=2;SPLICESCORE=4;INTERCHROM;ALTSPLICE
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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27 1 127753955 bnd_3783_1 T T]1:127773930] 181 PASS SVTYPE=BND;MATEID=bnd_3783_2;DP=8;SPLITCNT=2;SPANCNT=6;GENE=Acmsd,Ccnt2;GENEID=ENSMUSG00000026348,ENSMUSG00000026349;GENELOC=intron,upstream;EXPR=0,752;HOMLEN=0;SPLICESCORE=3;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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28 1 127773930 bnd_3783_2 T [1:127753955[T 181 PASS SVTYPE=BND;MATEID=bnd_3783_1;DP=8;SPLITCNT=2;SPANCNT=6;GENE=Acmsd,Ccnt2;GENEID=ENSMUSG00000026348,ENSMUSG00000026349;GENELOC=intron,upstream;EXPR=0,752;HOMLEN=0;SPLICESCORE=3;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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29 1 161036581 bnd_5020_2 A [5:79638362[A 208 PASS SVTYPE=BND;MATEID=bnd_5020_1;DP=36;SPLITCNT=27;SPANCNT=9;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;GENELOC=downstream,intron;EXPR=0,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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30 1 161036831 bnd_4912_2 G ]5:79638354]G 151 PASS SVTYPE=BND;MATEID=bnd_4912_1;DP=20;SPLITCNT=15;SPANCNT=5;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;GENELOC=downstream,intron;EXPR=0,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM;ALTSPLICE
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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31 1 168121480 bnd_3839_2 G ]1:168183530]G 249 PASS SVTYPE=BND;MATEID=bnd_3839_1;DP=29;SPLITCNT=13;SPANCNT=16;GENE=Pbx1,Gm20711;GENEID=ENSMUSG00000052534,ENSMUSG00000093538;GENELOC=coding,intron;EXPR=3895,0;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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32 1 168183530 bnd_3839_1 T T[1:168121480[ 249 PASS SVTYPE=BND;MATEID=bnd_3839_2;DP=29;SPLITCNT=13;SPANCNT=16;GENE=Pbx1,Gm20711;GENEID=ENSMUSG00000052534,ENSMUSG00000093538;GENELOC=coding,intron;EXPR=3895,0;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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33 2 165827729 bnd_5326_1 C C]18:4198107] 136 PASS SVTYPE=BND;MATEID=bnd_5326_2;DP=20;SPLITCNT=7;SPANCNT=13;GENE=Zmynd8,Gm10557;GENEID=ENSMUSG00000039671,ENSMUSG00000073647;GENELOC=utr3p,downstream;EXPR=2963,0;HOMLEN=9;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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34 2 174462629 bnd_2385_2 T ]2:174472832]T 194 PASS SVTYPE=BND;MATEID=bnd_2385_1;DP=12;SPLITCNT=7;SPANCNT=5;GENE=Slmo2,Atp5e;GENEID=ENSMUSG00000016257,ENSMUSG00000016252;GENELOC=coding,coding;EXPR=3085,3617;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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35 2 174472832 bnd_2385_1 C C[2:174462629[ 194 PASS SVTYPE=BND;MATEID=bnd_2385_2;DP=12;SPLITCNT=7;SPANCNT=5;GENE=Slmo2,Atp5e;GENEID=ENSMUSG00000016257,ENSMUSG00000016252;GENELOC=coding,coding;EXPR=3085,3617;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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36 3 103040040 bnd_5160_1 C C]18:28188917] 213 PASS SVTYPE=BND;MATEID=bnd_5160_2;DP=63;SPLITCNT=33;SPANCNT=30;GENE=Csde1,SNORA17;GENEID=ENSMUSG00000068823,ENSMUSG00000087940;GENELOC=coding,upstream;EXPR=10681,0;HOMLEN=91;SPLICESCORE=3;INTERCHROM;ALTSPLICE
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37 3 144201813 bnd_8647_1 T T]5:149198645] 242 PASS SVTYPE=BND;MATEID=bnd_8647_2;DP=9;SPLITCNT=4;SPANCNT=5;GENE=Lmo4,Uspl1;GENEID=ENSMUSG00000028266,ENSMUSG00000041264;GENELOC=coding,coding;EXPR=2482,2085;HOMLEN=1;SPLICESCORE=4;EXONBND;INTERCHROM
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38 4 124696071 bnd_12092_2 C ]4:124705614]C 187 PASS SVTYPE=BND;MATEID=bnd_12092_1;DP=11;SPLITCNT=2;SPANCNT=9;GENE=Fhl3,U6;GENEID=ENSMUSG00000032643,ENSMUSG00000088067;GENELOC=utr5p,downstream;EXPR=2072,0;HOMLEN=0;SPLICESCORE=1;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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39 4 124705614 bnd_12092_1 C C[4:124696071[ 187 PASS SVTYPE=BND;MATEID=bnd_12092_2;DP=11;SPLITCNT=2;SPANCNT=9;GENE=Fhl3,U6;GENEID=ENSMUSG00000032643,ENSMUSG00000088067;GENELOC=utr5p,downstream;EXPR=2072,0;HOMLEN=0;SPLICESCORE=1;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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40 4 148948907 bnd_12095_1 C C]4:148961548] 249 PASS SVTYPE=BND;MATEID=bnd_12095_2;DP=11;SPLITCNT=6;SPANCNT=5;GENE=Gm13205,Pex14;GENEID=ENSMUSG00000086606,ENSMUSG00000028975;GENELOC=intron,coding;EXPR=0,1453;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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41 4 148961548 bnd_12095_2 C [4:148948907[C 249 PASS SVTYPE=BND;MATEID=bnd_12095_1;DP=11;SPLITCNT=6;SPANCNT=5;GENE=Gm13205,Pex14;GENEID=ENSMUSG00000086606,ENSMUSG00000028975;GENELOC=intron,coding;EXPR=0,1453;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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42 5 23703360 bnd_11497_1 G G[15:33221484[ 230 PASS SVTYPE=BND;MATEID=bnd_11497_2;DP=230;SPLITCNT=67;SPANCNT=163;GENE=SNORD93,Pgcp;GENEID=ENSMUSG00000096832,ENSMUSG00000039007;GENELOC=downstream,intron;EXPR=0,1604;HOMLEN=0;SPLICESCORE=4;INTERCHROM;ALTSPLICE
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43 5 60176541 bnd_1721_2 G ]11:106187103]G 188 PASS SVTYPE=BND;MATEID=bnd_1721_1;DP=13;SPLITCNT=8;SPANCNT=5;GENE=Strada,Cbfa2t2-ps1;GENEID=ENSMUSG00000069631,ENSMUSG00000087034;GENELOC=coding,upstream;EXPR=800,0;HOMLEN=142;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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44 5 79638354 bnd_4912_1 A A]1:161036831] 151 PASS SVTYPE=BND;MATEID=bnd_4912_2;DP=20;SPLITCNT=15;SPANCNT=5;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;GENELOC=downstream,intron;EXPR=0,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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45 5 79638362 bnd_5020_1 C C[1:161036581[ 208 PASS SVTYPE=BND;MATEID=bnd_5020_2;DP=36;SPLITCNT=27;SPANCNT=9;GENE=7SK,Gas5;GENEID=ENSMUSG00000088422,ENSMUSG00000053332;GENELOC=downstream,intron;EXPR=0,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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46 5 105728723 bnd_13923_1 G G]8:126422269] 207 PASS SVTYPE=BND;MATEID=bnd_13923_2;DP=11;SPLITCNT=4;SPANCNT=7;GENE=Lrrc8d,1810063B05Rik;GENEID=ENSMUSG00000046079,ENSMUSG00000051671;GENELOC=intron,upstream;EXPR=590,367;HOMLEN=0;SPLICESCORE=4;INTERCHROM;ALTSPLICE
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47 5 149198645 bnd_8647_2 G ]3:144201813]G 242 PASS SVTYPE=BND;MATEID=bnd_8647_1;DP=9;SPLITCNT=4;SPANCNT=5;GENE=Lmo4,Uspl1;GENEID=ENSMUSG00000028266,ENSMUSG00000041264;GENELOC=coding,coding;EXPR=2482,2085;HOMLEN=1;SPLICESCORE=4;EXONBND;INTERCHROM
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48 6 51467295 bnd_12868_1 A A]10:73201702] 132 PASS SVTYPE=BND;MATEID=bnd_12868_2;DP=110;SPLITCNT=69;SPANCNT=41;GENE=Hnrnpa2b1,Gm15398;GENEID=ENSMUSG00000004980,ENSMUSG00000085456;GENELOC=coding,intron;EXPR=41631,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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49 6 52158684 bnd_7746_1 G G]6:52173634] 190 PASS SVTYPE=BND;MATEID=bnd_7746_2;DP=46;SPLITCNT=26;SPANCNT=20;GENE=Gm15051,Gm15050;GENEID=ENSMUSG00000087658,ENSMUSG00000087626;GENELOC=intron,intron;EXPR=0,0;HOMLEN=0;SPLICESCORE=2;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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50 6 52173634 bnd_7746_2 A [6:52158684[A 190 PASS SVTYPE=BND;MATEID=bnd_7746_1;DP=46;SPLITCNT=26;SPANCNT=20;GENE=Gm15051,Gm15050;GENEID=ENSMUSG00000087658,ENSMUSG00000087626;GENELOC=intron,intron;EXPR=0,0;HOMLEN=0;SPLICESCORE=2;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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75 10 73201702 bnd_12868_2 A ]6:51467295]A 132 PASS SVTYPE=BND;MATEID=bnd_12868_1;DP=110;SPLITCNT=69;SPANCNT=41;GENE=Hnrnpa2b1,Gm15398;GENEID=ENSMUSG00000004980,ENSMUSG00000085456;GENELOC=coding,intron;EXPR=41631,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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81 11 121206748 bnd_12549_1 C C]10:128814038] 236 PASS SVTYPE=BND;MATEID=bnd_12549_2;DP=36;SPLITCNT=18;SPANCNT=18;GENE=Hexdc,Dnajc14;GENEID=ENSMUSG00000039307,ENSMUSG00000025354;GENELOC=utr5p,coding;EXPR=1732,2437;HOMLEN=1;SPLICESCORE=4;EXONBND;INTERCHROM;ALTSPLICE
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b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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92 14 31134739 bnd_9962_2 A [14:31131376[A 189 PASS SVTYPE=BND;MATEID=bnd_9962_1;DP=126;SPLITCNT=93;SPANCNT=33;GENE=2010107H07Rik,Nt5dc2;GENEID=ENSMUSG00000058351,ENSMUSG00000071547;GENELOC=upstream,upstream;EXPR=211,4122;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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93 15 33221484 bnd_11497_2 C [5:23703360[C 230 PASS SVTYPE=BND;MATEID=bnd_11497_1;DP=230;SPLITCNT=67;SPANCNT=163;GENE=SNORD93,Pgcp;GENEID=ENSMUSG00000096832,ENSMUSG00000039007;GENELOC=downstream,intron;EXPR=0,1604;HOMLEN=0;SPLICESCORE=4;INTERCHROM;ALTSPLICE
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94 15 74996568 bnd_11177_2 C ]15:75048442]C 144 PASS SVTYPE=BND;MATEID=bnd_11177_1;DP=497;SPLITCNT=434;SPANCNT=63;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;GENELOC=utr5p,utr5p;EXPR=1416,5049;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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95 15 74996568 bnd_11169_2 A ]15:75048442]A 237 PASS SVTYPE=BND;MATEID=bnd_11169_1;DP=702;SPLITCNT=410;SPANCNT=292;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;GENELOC=utr5p,utr5p;EXPR=1416,5049;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
b22f8634ff84 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
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96 15 75048442 bnd_11177_1 A A[15:74996568[ 144 PASS SVTYPE=BND;MATEID=bnd_11177_2;DP=497;SPLITCNT=434;SPANCNT=63;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;GENELOC=utr5p,utr5p;EXPR=1416,5049;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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97 15 75048442 bnd_11169_1 G G[15:74996568[ 237 PASS SVTYPE=BND;MATEID=bnd_11169_2;DP=702;SPLITCNT=410;SPANCNT=292;GENE=Ly6c1,Ly6a;GENEID=ENSMUSG00000079018,ENSMUSG00000075602;GENELOC=utr5p,utr5p;EXPR=1416,5049;HOMLEN=0;SPLICESCORE=4;ORF;EXONBND;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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98 15 102188962 bnd_11202_1 G G]15:102202444] 248 PASS SVTYPE=BND;MATEID=bnd_11202_2;DP=31;SPLITCNT=21;SPANCNT=10;GENE=Csad,Zfp740;GENEID=ENSMUSG00000023044,ENSMUSG00000046897;GENELOC=utr5p,upstream;EXPR=1306,3566;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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99 15 102202444 bnd_11202_2 C [15:102188962[C 248 PASS SVTYPE=BND;MATEID=bnd_11202_1;DP=31;SPLITCNT=21;SPANCNT=10;GENE=Csad,Zfp740;GENEID=ENSMUSG00000023044,ENSMUSG00000046897;GENELOC=utr5p,upstream;EXPR=1306,3566;HOMLEN=0;SPLICESCORE=4;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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101 16 37799068 bnd_4068_2 T ]1:106734547]T 233 PASS SVTYPE=BND;MATEID=bnd_4068_1;DP=19;SPLITCNT=8;SPANCNT=11;GENE=Kdsr,Fstl1;GENEID=ENSMUSG00000009905,ENSMUSG00000022816;GENELOC=coding,intron;EXPR=775,35409;HOMLEN=2;SPLICESCORE=4;INTERCHROM;ALTSPLICE
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102 17 17395298 bnd_3153_1 C C]17:17411818] 206 PASS SVTYPE=BND;MATEID=bnd_3153_2;DP=41;SPLITCNT=16;SPANCNT=25;GENE=AC154200.1,Lix1;GENEID=ENSMUSG00000097379,ENSMUSG00000047786;GENELOC=intron,intron;EXPR=0,30;HOMLEN=0;SPLICESCORE=1;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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104 17 35266514 bnd_3184_1 G G]17:35383995] 218 PASS SVTYPE=BND;MATEID=bnd_3184_2;DP=47;SPLITCNT=40;SPANCNT=7;GENE=H2-D1,H2-Q4;GENEID=ENSMUSG00000073411,ENSMUSG00000035929;GENELOC=coding,utr3p;EXPR=23545,2145;HOMLEN=0;SPLICESCORE=4;EXONBND;ALTSPLICE;DELETION
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105 17 35383995 bnd_3184_2 A [17:35266514[A 218 PASS SVTYPE=BND;MATEID=bnd_3184_1;DP=47;SPLITCNT=40;SPANCNT=7;GENE=H2-D1,H2-Q4;GENEID=ENSMUSG00000073411,ENSMUSG00000035929;GENELOC=coding,utr3p;EXPR=23545,2145;HOMLEN=0;SPLICESCORE=4;EXONBND;ALTSPLICE;DELETION
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107 17 63896016 bnd_3179_2 A [17:63864053[A 195 PASS SVTYPE=BND;MATEID=bnd_3179_1;DP=17;SPLITCNT=10;SPANCNT=7;GENE=A930002H24Rik,Fer;GENEID=ENSMUSG00000045506,ENSMUSG00000000127;GENELOC=upstream,upstream;EXPR=10,1325;HOMLEN=0;SPLICESCORE=3;READTHROUGH;ADJACENT;ALTSPLICE;DELETION
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108 18 4198107 bnd_5326_2 G ]2:165827729]G 136 PASS SVTYPE=BND;MATEID=bnd_5326_1;DP=20;SPLITCNT=7;SPANCNT=13;GENE=Zmynd8,Gm10557;GENEID=ENSMUSG00000039671,ENSMUSG00000073647;GENELOC=utr3p,downstream;EXPR=2963,0;HOMLEN=9;SPLICESCORE=1;INTERCHROM;ALTSPLICE
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110 18 30311220 bnd_7456_1 G G]16:19493776] 189 PASS SVTYPE=BND;MATEID=bnd_7456_2;DP=19;SPLITCNT=9;SPANCNT=10;GENE=Pik3c3,Olfr166;GENEID=ENSMUSG00000033628,ENSMUSG00000056822;GENELOC=coding,downstream;EXPR=1791,0;HOMLEN=0;SPLICESCORE=1;INTERCHROM
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111 18 53932206 bnd_5141_1 T T[X:53418862[ 201 PASS SVTYPE=BND;MATEID=bnd_5141_2;DP=26;SPLITCNT=9;SPANCNT=17;GENE=Csnk1g3,Gm14584;GENEID=ENSMUSG00000073563,ENSMUSG00000083798;GENELOC=coding,intron;EXPR=2227,0;HOMLEN=266;SPLICESCORE=2;INTERCHROM;ALTSPLICE
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112 19 37678397 bnd_13800_1 C C]19:37696729] 204 PASS SVTYPE=BND;MATEID=bnd_13800_2;DP=15;SPLITCNT=3;SPANCNT=12;GENE=Exoc6,Cyp26a1;GENEID=ENSMUSG00000053799,ENSMUSG00000024987;GENELOC=intron,upstream;EXPR=575,443;HOMLEN=0;SPLICESCORE=1;ALTSPLICE;DELETION
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113 19 37696729 bnd_13800_2 A [19:37678397[A 204 PASS SVTYPE=BND;MATEID=bnd_13800_1;DP=15;SPLITCNT=3;SPANCNT=12;GENE=Exoc6,Cyp26a1;GENEID=ENSMUSG00000053799,ENSMUSG00000024987;GENELOC=intron,upstream;EXPR=575,443;HOMLEN=0;SPLICESCORE=1;ALTSPLICE;DELETION
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