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comparison defuse_results_to_vcf.xml @ 16:bdd93719cede draft

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author jjohnson
date Mon, 18 Dec 2017 09:31:31 -0500
parents b22f8634ff84
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15:b67c24d902aa 16:bdd93719cede
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="defuse_results_to_vcf" name="Defuse Results to VCF" version="0.6.1"> 2 <tool id="defuse_results_to_vcf" name="Defuse Results to VCF" version="@DEFUSE_VERSION@.2">
3 <description>generate a VCF from a DeFuse Results file</description> 3 <description>generate a VCF from a DeFuse Results file</description>
4 <requirements> 4 <macros>
5 <requirement type="package" version="0.6.1">defuse</requirement> 5 <import>macros.xml</import>
6 </requirements> 6 </macros>
7 <command interpreter="python">defuse_results_to_vcf.py --input $defuse_results --reference ${defuse_results.metadata.dbkey} --output $vcf 7 <command interpreter="python">defuse_results_to_vcf.py --input $defuse_results --reference ${defuse_results.metadata.dbkey} --output $vcf
8 </command> 8 </command>
9 <inputs> 9 <inputs>
10 <param name="defuse_results" type="data" format="defuse.results.tsv" label="Defuse Results file"/> 10 <param name="defuse_results" type="data" format="defuse.results.tsv" label="Defuse Results file"/>
11 </inputs> 11 </inputs>