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comparison defuse_trinity_analysis.xml @ 16:bdd93719cede draft

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author jjohnson
date Mon, 18 Dec 2017 09:31:31 -0500
parents b22f8634ff84
children c3167ccca38c
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15:b67c24d902aa 16:bdd93719cede
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="defuse_trinity_analysis" name="Defuse Trinity" version="0.6.1"> 2 <tool id="defuse_trinity_analysis" name="Defuse Trinity" version="@DEFUSE_VERSION@.2">
3 <description>verify fusions with trinity</description> 3 <description>verify fusions with trinity</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
4 <stdio> 7 <stdio>
5 <exit_code range="1:" level="fatal" description="Error" /> 8 <exit_code range="1:" level="fatal" description="Error" />
6 </stdio> 9 </stdio>
7 <command interpreter="python">defuse_trinity_analysis.py --input $defuse_results --transcripts $trinity_transcripts --peptides $trinity_orfs 10 <command interpreter="python">defuse_trinity_analysis.py --input $defuse_results --transcripts $trinity_transcripts --peptides $trinity_orfs
8 --nbases $nbases --min_pep_len $min_pep_len --ticdist $ticdist --readthrough=$readthrough 11 --nbases $nbases --min_pep_len $min_pep_len --ticdist $ticdist --readthrough=$readthrough