Mercurial > repos > jjohnson > defuse
diff datamanager_create_reference.xml @ 16:bdd93719cede draft
Uploaded
author | jjohnson |
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date | Mon, 18 Dec 2017 09:31:31 -0500 |
parents | b67c24d902aa |
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--- a/datamanager_create_reference.xml Tue Dec 12 12:00:24 2017 -0500 +++ b/datamanager_create_reference.xml Mon Dec 18 09:31:31 2017 -0500 @@ -1,4 +1,4 @@ -<tool id="data_manager_defuse_reference" name="DeFuse Reference DataManager" version="1.6.1" tool_type="manage_data"> +<tool id="data_manager_defuse_reference" name="DeFuse Reference DataManager" version="@DEFUSE_VERSION@.2" tool_type="manage_data"> <description>create a defuse reference from Ensembl and UCSC sources</description> <macros> <import>macros.xml</import> @@ -112,11 +112,11 @@ <when value="user_specified"> <param name="ensembl_organism" type="text" value="" label="Ensembl Organism Name" help="Examples: homo_sapiens, mus_musculus, rattus_norvegicus"/> <param name="ensembl_prefix" type="text" value="" label="Ensembl Organism prefix" help="Examples: Homo_sapiens, Mus_musculus, Rattus_norvegicus"/> - <param name="ensembl_genome_version" type="text" value="" label="Ensembl Genome Version" help="Examples: GRCh37, GRCm38, Rnor_5.0"/> - <param name="ensembl_version" type="integer" value="" label="Ensembl Release Version" help="Example: 71"/> + <param name="ensembl_genome_version" type="text" value="" label="Ensembl Genome Version" help="Examples: GRCh38, GRCh37, GRCm38, Rnor_5.0"/> + <param name="ensembl_version" type="integer" value="" label="Ensembl Release Version" help="Example: 86"/> <param name="ncbi_organism" type="text" value="" label="NCBI Organism Name" help="Examples: Homo_sapiens, Mus_musculus, Rattus_norvegicus"/> <param name="ncbi_prefix" type="text" value="" label="NCBI Organism Unigene prefix" help="Examples: Hs, Mm, Rn"/> - <param name="ucsc_genome_version" type="text" value="" label="UCSC Genome Version" help="Examples: hg19, mm10, rn5"/> + <param name="ucsc_genome_version" type="text" value="" label="UCSC Genome Version" help="Examples: hg38, hg19, mm10, rn5"/> <param name="chromosomes" type="text" value="" label="Chromosomes for Ensembl genome build" > <help> Examples: Homo_sapiens: 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT